Wall clock time and date at job start Tue Mar 31 2020 06:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00079 * 2 1 4 4 H 1.48510 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47146 * 299.99499 * 3 2 1 6 6 H 1.48502 * 109.47605 * 59.99952 * 3 2 1 7 7 C 1.37874 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46894 * 300.00187 * 11 10 9 13 13 N 1.46909 * 109.46951 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99791 * 135.40807 * 13 12 11 15 15 C 1.49631 * 107.29796 * 284.45362 * 14 13 12 16 16 C 1.56036 * 102.75381 * 282.69346 * 15 14 13 17 17 N 1.50067 * 106.16398 * 354.98811 * 16 15 14 18 18 C 1.45372 * 103.33465 * 332.21448 * 17 16 15 19 19 H 1.08997 * 111.68496 * 288.63036 * 18 17 16 20 20 C 1.52330 * 122.62459 * 150.76291 * 18 17 16 21 21 C 1.53714 * 100.86130 * 213.84538 * 20 18 17 22 22 O 1.21283 * 125.67319 * 203.88451 * 21 20 18 23 23 N 1.36652 * 108.44482 * 23.20436 * 21 20 18 24 24 C 1.52999 * 109.47744 * 59.99670 * 12 11 10 25 25 C 1.53003 * 109.46573 * 299.99855 * 9 7 2 26 26 H 0.97004 * 120.00229 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46925 * 59.99865 * 9 7 2 28 28 H 1.09005 * 109.47471 * 59.99614 * 10 9 7 29 29 H 1.08999 * 109.47100 * 299.99923 * 10 9 7 30 30 H 1.08999 * 109.47488 * 179.97438 * 11 10 9 31 31 H 1.09005 * 109.46945 * 59.99538 * 11 10 9 32 32 H 1.08997 * 109.47029 * 299.99220 * 12 11 10 33 33 H 1.00895 * 110.99914 * 11.45212 * 13 12 11 34 34 H 1.08993 * 110.76087 * 41.00703 * 15 14 13 35 35 H 1.09001 * 110.75377 * 164.37977 * 15 14 13 36 36 H 1.09000 * 110.11308 * 114.16387 * 16 15 14 37 37 H 1.09001 * 110.11494 * 235.81979 * 16 15 14 38 38 H 1.00906 * 110.99193 * 91.25855 * 17 16 15 39 39 H 1.08997 * 111.13625 * 331.74399 * 20 18 17 40 40 H 1.08995 * 111.14237 * 95.89993 * 20 18 17 41 41 H 0.97003 * 125.74656 * 187.61951 * 23 21 20 42 42 H 1.08997 * 109.47225 * 59.99670 * 24 12 11 43 43 H 1.08999 * 109.47573 * 179.97438 * 24 12 11 44 44 H 1.08997 * 109.47502 * 299.99656 * 25 9 7 45 45 H 1.09004 * 109.46944 * 60.00499 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 0.6000 -5.0672 1.2514 13 7 -0.1350 -6.3392 1.2517 14 6 -0.0998 -6.9672 2.5793 15 6 1.2646 -7.5552 2.7572 16 6 1.1922 -8.8587 1.9026 17 7 -0.2253 -8.9645 1.4214 18 6 -0.9815 -8.2702 2.4507 19 1 -1.0187 -8.8419 3.3779 20 6 -2.2910 -7.5477 2.1612 21 6 -2.1986 -6.3737 3.1491 22 8 -3.1378 -5.7503 3.5966 23 7 -0.8820 -6.1629 3.4483 24 6 -0.3943 -3.9043 1.2502 25 6 0.3708 -2.5799 1.2495 26 1 -0.4851 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 2.8712 -3.6040 0.8923 29 1 2.8724 -3.6047 -0.8877 30 1 2.1884 -5.8156 0.0029 31 1 0.8538 -5.0455 -0.8877 32 1 1.2262 -5.0089 2.1415 33 1 0.2243 -6.9646 0.5462 34 1 2.0291 -6.8816 2.3702 35 1 1.4502 -7.7903 3.8053 36 1 1.8721 -8.7885 1.0536 37 1 1.4453 -9.7235 2.5159 38 1 -0.3372 -8.5148 0.5250 39 1 -2.3247 -7.1929 1.1311 40 1 -3.1481 -8.1831 2.3837 41 1 -0.5448 -5.5541 4.1240 42 1 -1.0206 -3.9626 0.3600 43 1 -1.0216 -3.9617 2.1397 44 1 0.9971 -2.5220 2.1397 45 1 -0.3375 -1.7514 1.2490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246142138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:03 Heat of formation + Delta-G solvation = 5.507859 kcal Electronic energy + Delta-G solvation = -25371.519242 eV Core-core repulsion = 22003.583393 eV Total energy + Delta-G solvation = -3367.935849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.08817 -38.43036 -37.63688 -34.97824 -33.80413 -32.00867 -31.11938 -29.81853 -28.88103 -27.93683 -25.65353 -24.21631 -21.78201 -21.55976 -21.01787 -20.69331 -20.04967 -18.83148 -17.31987 -16.75685 -16.36775 -16.34176 -15.61269 -15.14675 -14.59536 -14.27392 -14.05960 -13.92705 -13.64905 -13.51042 -13.02354 -12.86375 -12.71990 -12.61366 -12.15735 -11.94666 -11.44345 -11.42445 -11.34116 -11.06642 -10.90547 -10.68223 -10.57126 -10.46973 -10.22053 -9.98911 -9.91117 -9.63712 -9.38386 -8.99975 -8.81637 -8.64648 -8.32089 -8.27022 -5.97129 -4.04001 2.54648 3.09549 3.28859 3.33856 3.37313 3.40255 4.12201 4.34003 4.36239 4.43962 4.54583 4.60292 4.88407 4.95874 5.10955 5.23730 5.32886 5.39784 5.46768 5.48643 5.58747 5.65203 5.75231 5.81191 5.97833 6.21780 6.27988 6.34045 6.34508 6.50489 6.63299 6.66667 6.75787 6.82827 6.92457 6.96718 7.10011 7.16103 7.29994 7.37012 7.54183 7.76229 8.01548 8.17816 8.26421 8.47267 9.00427 9.60919 11.08212 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.004318 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.894654 B = 6482.757820 C = 7217.994346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.050 3.950 10 C -0.104 4.104 11 C -0.124 4.124 12 C 0.098 3.902 13 N -0.704 5.704 14 C 0.263 3.737 15 C -0.162 4.162 16 C 0.044 3.956 17 N -0.651 5.651 18 C 0.057 3.943 19 H 0.108 0.892 20 C -0.126 4.126 21 C 0.547 3.453 22 O -0.520 6.520 23 N -0.698 5.698 24 C -0.097 4.097 25 C -0.109 4.109 26 H 0.259 0.741 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.337 0.663 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.345 0.655 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.408 0.592 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.028 0.972 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -19.101 4.410 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.142 4.142 11 C -0.162 4.162 12 C -0.010 4.010 13 N -0.341 5.341 14 C 0.082 3.918 15 C -0.204 4.204 16 C -0.085 4.085 17 N -0.281 5.281 18 C -0.056 4.056 19 H 0.126 0.874 20 C -0.166 4.166 21 C 0.333 3.667 22 O -0.393 6.393 23 N -0.354 5.354 24 C -0.136 4.136 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.159 0.841 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.112 0.888 41 H 0.247 0.753 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.037 -19.153 4.843 19.756 hybrid contribution 1.983 2.058 0.145 2.862 sum 1.946 -17.095 4.988 17.913 Atomic orbital electron populations 1.69888 1.05830 1.26217 1.50767 1.24965 0.94810 0.98982 0.95209 0.86613 0.80122 0.84131 0.77574 1.19895 1.21051 1.21096 1.21253 0.92809 0.90821 1.50410 0.92886 1.18643 0.92503 0.91350 0.94372 1.21574 0.98582 0.94075 1.00001 1.21915 0.97849 0.98661 0.97750 1.21520 0.93780 0.88553 0.97178 1.61363 1.60786 1.07006 1.04995 1.21091 0.93379 0.91694 0.85668 1.22608 0.96217 0.98712 1.02851 1.23629 0.89939 0.96181 0.98799 1.62806 1.05272 1.55187 1.04838 1.23354 0.93958 0.91273 0.96971 0.87443 1.22318 0.97358 0.94911 1.02050 1.21849 0.81470 0.83696 0.79639 1.90751 1.40417 1.52701 1.55445 1.45007 1.06634 1.45776 1.37996 1.21606 0.97012 0.94485 1.00489 1.21615 0.99529 0.95270 0.98344 0.93102 0.95739 0.93676 0.93374 0.94129 0.91867 0.93619 0.84090 0.89688 0.90082 0.90415 0.89355 0.83551 0.86029 0.88789 0.75321 0.92771 0.94023 0.95354 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.01 16 10 C -0.10 -2.05 5.14 -26.73 -0.14 -2.18 16 11 C -0.12 -1.92 5.04 -26.73 -0.13 -2.06 16 12 C 0.10 1.48 1.73 -67.71 -0.12 1.36 16 13 N -0.70 -8.21 4.11 -97.15 -0.40 -8.61 16 14 C 0.26 2.66 1.50 -194.85 -0.29 2.37 16 15 C -0.16 -1.34 6.14 -26.77 -0.16 -1.50 16 16 C 0.04 0.30 7.08 -0.42 0.00 0.30 16 17 N -0.65 -5.17 7.52 -101.14 -0.76 -5.93 16 18 C 0.06 0.51 3.85 -66.22 -0.25 0.26 16 19 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.13 -1.33 6.39 -26.70 -0.17 -1.50 16 21 C 0.55 7.70 8.15 -8.61 -0.07 7.63 16 22 O -0.52 -9.54 18.03 5.55 0.10 -9.44 16 23 N -0.70 -8.44 4.87 -50.46 -0.25 -8.68 16 24 C -0.10 -1.88 5.47 -26.75 -0.15 -2.03 16 25 C -0.11 -2.55 4.98 -26.75 -0.13 -2.68 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.71 6.75 -51.93 -0.35 0.36 16 33 H 0.34 3.41 5.12 -39.29 -0.20 3.21 16 34 H 0.08 0.79 6.80 -51.93 -0.35 0.44 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.34 2.69 6.68 -39.29 -0.26 2.43 16 39 H 0.12 1.34 7.39 -51.93 -0.38 0.96 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.41 4.87 8.96 -40.82 -0.37 4.50 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.82 7.27 -51.93 -0.38 0.44 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -30.32 336.94 -10.05 -40.37 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.22 Total: 7.57 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.21 Total: -11.73 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.78 Total: -48.16 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.10 Total: -9.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.32 -10.05 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246142138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.877 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds