Wall clock time and date at job start Tue Mar 31 2020 06:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00079 * 2 1 4 4 H 1.48510 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47146 * 299.99499 * 3 2 1 6 6 H 1.48502 * 109.47605 * 59.99952 * 3 2 1 7 7 C 1.37874 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46894 * 300.00187 * 11 10 9 13 13 N 1.46909 * 109.46951 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99791 * 135.40807 * 13 12 11 15 15 C 1.49631 * 107.29796 * 284.45362 * 14 13 12 16 16 C 1.56036 * 102.75381 * 282.69346 * 15 14 13 17 17 N 1.50067 * 106.16398 * 354.98811 * 16 15 14 18 18 C 1.45372 * 103.33465 * 332.21448 * 17 16 15 19 19 H 1.08997 * 111.68496 * 288.63036 * 18 17 16 20 20 C 1.52330 * 122.62459 * 150.76291 * 18 17 16 21 21 C 1.53714 * 100.86130 * 213.84538 * 20 18 17 22 22 O 1.21283 * 125.67319 * 203.88451 * 21 20 18 23 23 N 1.36652 * 108.44482 * 23.20436 * 21 20 18 24 24 C 1.52999 * 109.47744 * 59.99670 * 12 11 10 25 25 C 1.53003 * 109.46573 * 299.99855 * 9 7 2 26 26 H 0.97004 * 120.00229 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46925 * 59.99865 * 9 7 2 28 28 H 1.09005 * 109.47471 * 59.99614 * 10 9 7 29 29 H 1.08999 * 109.47100 * 299.99923 * 10 9 7 30 30 H 1.08999 * 109.47488 * 179.97438 * 11 10 9 31 31 H 1.09005 * 109.46945 * 59.99538 * 11 10 9 32 32 H 1.08997 * 109.47029 * 299.99220 * 12 11 10 33 33 H 1.00895 * 110.99914 * 11.45212 * 13 12 11 34 34 H 1.08993 * 110.76087 * 41.00703 * 15 14 13 35 35 H 1.09001 * 110.75377 * 164.37977 * 15 14 13 36 36 H 1.09000 * 110.11308 * 114.16387 * 16 15 14 37 37 H 1.09001 * 110.11494 * 235.81979 * 16 15 14 38 38 H 1.00906 * 110.99193 * 91.25855 * 17 16 15 39 39 H 1.08997 * 111.13625 * 331.74399 * 20 18 17 40 40 H 1.08995 * 111.14237 * 95.89993 * 20 18 17 41 41 H 0.97003 * 125.74656 * 187.61951 * 23 21 20 42 42 H 1.08997 * 109.47225 * 59.99670 * 24 12 11 43 43 H 1.08999 * 109.47573 * 179.97438 * 24 12 11 44 44 H 1.08997 * 109.47502 * 299.99656 * 25 9 7 45 45 H 1.09004 * 109.46944 * 60.00499 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 0.6000 -5.0672 1.2514 13 7 -0.1350 -6.3392 1.2517 14 6 -0.0998 -6.9672 2.5793 15 6 1.2646 -7.5552 2.7572 16 6 1.1922 -8.8587 1.9026 17 7 -0.2253 -8.9645 1.4214 18 6 -0.9815 -8.2702 2.4507 19 1 -1.0187 -8.8419 3.3779 20 6 -2.2910 -7.5477 2.1612 21 6 -2.1986 -6.3737 3.1491 22 8 -3.1378 -5.7503 3.5966 23 7 -0.8820 -6.1629 3.4483 24 6 -0.3943 -3.9043 1.2502 25 6 0.3708 -2.5799 1.2495 26 1 -0.4851 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 2.8712 -3.6040 0.8923 29 1 2.8724 -3.6047 -0.8877 30 1 2.1884 -5.8156 0.0029 31 1 0.8538 -5.0455 -0.8877 32 1 1.2262 -5.0089 2.1415 33 1 0.2243 -6.9646 0.5462 34 1 2.0291 -6.8816 2.3702 35 1 1.4502 -7.7903 3.8053 36 1 1.8721 -8.7885 1.0536 37 1 1.4453 -9.7235 2.5159 38 1 -0.3372 -8.5148 0.5250 39 1 -2.3247 -7.1929 1.1311 40 1 -3.1481 -8.1831 2.3837 41 1 -0.5448 -5.5541 4.1240 42 1 -1.0206 -3.9626 0.3600 43 1 -1.0216 -3.9617 2.1397 44 1 0.9971 -2.5220 2.1397 45 1 -0.3375 -1.7514 1.2490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246142138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:02 Heat of formation + Delta-G solvation = -17.525072 kcal Electronic energy + Delta-G solvation = -25372.518025 eV Core-core repulsion = 22003.583393 eV Total energy + Delta-G solvation = -3368.934632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.96631 -39.64302 -39.03863 -35.92917 -35.41127 -33.58342 -32.06798 -31.43694 -30.05550 -29.08876 -26.72434 -25.84940 -23.34954 -22.50666 -22.18082 -21.66864 -21.10478 -20.48159 -18.42823 -18.25850 -17.71137 -17.34189 -16.65952 -16.39076 -16.08338 -15.38039 -15.29620 -15.00662 -14.82682 -14.75574 -14.64657 -14.20779 -13.91787 -13.62662 -13.45438 -13.12142 -12.95957 -12.86723 -12.58290 -12.47538 -12.20675 -12.10544 -12.06188 -11.90158 -11.75762 -11.57241 -11.22368 -11.11885 -10.81981 -10.69398 -10.45096 -10.33978 -9.61568 -9.28750 -8.09462 -6.24370 1.36571 1.38553 1.47113 1.49495 2.19439 2.40672 2.51035 3.15834 3.19720 3.57812 3.63716 3.81449 3.87606 3.92855 4.06295 4.17594 4.29200 4.37687 4.41881 4.54660 4.63071 4.80768 4.82863 4.83721 4.88052 4.90205 4.95561 4.98497 5.03865 5.08573 5.16528 5.25715 5.38368 5.46036 5.57984 5.60433 5.66953 5.74118 5.85426 6.01261 6.07822 6.19090 6.33764 6.38963 6.47620 6.90460 7.21692 7.44495 8.94183 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.004318 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.894654 B = 6482.757820 C = 7217.994346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.098 4.098 11 C -0.114 4.114 12 C 0.116 3.884 13 N -0.703 5.703 14 C 0.254 3.746 15 C -0.157 4.157 16 C 0.049 3.951 17 N -0.650 5.650 18 C 0.074 3.926 19 H 0.119 0.881 20 C -0.119 4.119 21 C 0.536 3.464 22 O -0.574 6.574 23 N -0.696 5.696 24 C -0.084 4.084 25 C -0.100 4.100 26 H 0.258 0.742 27 H -0.011 1.011 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.353 0.647 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.347 0.653 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.406 0.594 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.022 0.978 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 -21.723 4.378 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.028 3.972 10 C -0.136 4.136 11 C -0.152 4.152 12 C 0.006 3.994 13 N -0.342 5.342 14 C 0.074 3.926 15 C -0.198 4.198 16 C -0.080 4.080 17 N -0.280 5.280 18 C -0.038 4.038 19 H 0.136 0.864 20 C -0.159 4.159 21 C 0.324 3.676 22 O -0.451 6.451 23 N -0.350 5.350 24 C -0.123 4.123 25 C -0.139 4.139 26 H 0.067 0.933 27 H 0.007 0.993 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.167 0.833 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.244 0.756 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.033 -21.819 4.792 22.432 hybrid contribution 1.341 2.888 0.154 3.188 sum 3.374 -18.931 4.946 19.855 Atomic orbital electron populations 1.70055 1.07308 1.26833 1.51676 1.25769 0.95576 1.02491 0.95028 0.85615 0.79267 0.79964 0.77480 1.18829 1.20697 1.20938 1.21692 0.93041 0.92429 1.49988 0.92924 1.18612 0.93036 0.92628 0.92929 1.21427 0.97688 0.94334 1.00154 1.21815 0.98188 0.97646 0.97527 1.21122 0.92392 0.88553 0.97298 1.61116 1.60379 1.06173 1.06561 1.21412 0.95154 0.91776 0.84247 1.22616 0.94179 0.98989 1.03998 1.23710 0.89217 0.95735 0.99336 1.62834 1.05907 1.54701 1.04564 1.23289 0.92332 0.90465 0.97744 0.86362 1.22274 0.99193 0.93836 1.00643 1.22550 0.81396 0.84055 0.79578 1.90714 1.42131 1.54700 1.57583 1.45105 1.06549 1.45510 1.37827 1.21406 0.97243 0.94577 0.99078 1.21386 0.98620 0.96148 0.97721 0.93297 0.99313 0.93404 0.93267 0.89793 0.92308 0.93312 0.82316 0.90128 0.88969 0.88891 0.88010 0.83343 0.86309 0.87410 0.75564 0.94682 0.94829 0.95911 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.03 11.32 21.45 0.24 -54.78 16 2 C 0.01 0.54 5.30 84.65 0.45 0.99 16 3 Si 0.95 44.42 29.54 68.60 2.03 46.44 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.53 -29.65 8.56 25.60 0.22 -29.43 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.31 2.10 -11.54 -0.02 2.29 16 10 C -0.10 -3.74 5.14 30.59 0.16 -3.58 16 11 C -0.11 -3.25 5.04 30.59 0.15 -3.09 16 12 C 0.12 3.30 1.73 44.91 0.08 3.38 16 13 N -0.70 -14.70 4.11 -461.26 -1.89 -16.59 16 14 C 0.25 4.49 1.50 90.33 0.14 4.62 16 15 C -0.16 -1.95 6.14 30.57 0.19 -1.76 16 16 C 0.05 0.44 7.08 86.74 0.61 1.05 16 17 N -0.65 -7.67 7.52 -473.91 -3.56 -11.23 16 18 C 0.07 1.10 3.85 46.70 0.18 1.28 16 19 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 20 C -0.12 -2.32 6.39 30.61 0.20 -2.12 16 21 C 0.54 15.01 8.15 88.34 0.72 15.73 16 22 O -0.57 -21.80 18.03 -3.04 -0.05 -21.85 16 23 N -0.70 -16.17 4.87 -430.87 -2.10 -18.27 16 24 C -0.08 -3.34 5.47 30.58 0.17 -3.17 16 25 C -0.10 -4.86 4.98 30.58 0.15 -4.71 16 26 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.05 1.41 6.75 -2.39 -0.02 1.39 16 33 H 0.35 5.79 5.12 -89.70 -0.46 5.33 16 34 H 0.08 1.14 6.80 -2.39 -0.02 1.12 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.35 4.01 6.68 -89.69 -0.60 3.41 16 39 H 0.12 2.44 7.39 -2.39 -0.02 2.42 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.41 9.54 8.96 -92.71 -0.83 8.71 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.03 1.36 7.27 -2.39 -0.02 1.34 16 44 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 2.75 6.07 -2.39 -0.01 2.73 16 Total: -1.00 -69.73 336.94 -2.83 -72.56 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.88 Total: 22.25 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.38 Total: -18.53 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -7.31 Total: -100.88 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.73 -2.83 -72.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246142138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.039 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds