Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47294 * 2 1 4 4 C 1.35896 * 117.00101 * 179.97438 * 3 2 1 5 5 C 1.38654 * 120.02544 * 0.02783 * 4 3 2 6 6 C 1.38615 * 119.88667 * 179.97438 * 5 4 3 7 7 O 1.35903 * 120.02521 * 180.02562 * 6 5 4 8 8 C 1.42896 * 116.99699 * 180.02562 * 7 6 5 9 9 C 1.38794 * 119.94708 * 359.97438 * 6 5 4 10 10 C 1.38151 * 120.05456 * 359.72973 * 9 6 5 11 11 C 1.38202 * 120.10904 * 0.54645 * 10 9 6 12 12 C 1.50694 * 119.97343 * 179.72476 * 11 10 9 13 13 N 1.46898 * 109.47362 * 254.95914 * 12 11 10 14 14 C 1.46894 * 110.99976 * 71.56246 * 13 12 11 15 15 C 1.53004 * 109.47054 * 63.47490 * 14 13 12 16 16 C 1.46898 * 110.99912 * 195.51999 * 13 12 11 17 17 C 1.50706 * 109.47205 * 169.99937 * 16 13 12 18 18 H 1.08005 * 119.99767 * 359.97438 * 17 16 13 19 19 C 1.37870 * 120.00362 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46752 * 59.99964 * 21 19 17 23 23 H 1.48498 * 109.47277 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46911 * 299.99782 * 21 19 17 25 25 H 1.09004 * 109.47565 * 59.99999 * 1 2 3 26 26 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47520 * 299.99884 * 1 2 3 28 28 H 1.08993 * 109.47224 * 240.00069 * 2 1 3 29 29 H 1.09007 * 109.47076 * 120.00135 * 2 1 3 30 30 H 1.07997 * 120.05861 * 359.95117 * 5 4 3 31 31 H 1.08993 * 109.47795 * 59.99873 * 8 7 6 32 32 H 1.09009 * 109.46844 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.47327 * 299.99738 * 8 7 6 34 34 H 1.08006 * 119.97166 * 180.02562 * 9 6 5 35 35 H 1.08003 * 119.94782 * 180.29325 * 10 9 6 36 36 H 1.09004 * 109.47345 * 134.95551 * 12 11 10 37 37 H 1.09004 * 109.47062 * 14.96097 * 12 11 10 38 38 H 1.09005 * 109.47114 * 183.46924 * 14 13 12 39 39 H 1.08994 * 109.47444 * 303.47066 * 14 13 12 40 40 H 1.08997 * 109.47774 * 60.19658 * 15 14 13 41 41 H 1.09001 * 109.47157 * 180.20259 * 15 14 13 42 42 H 1.09001 * 109.46636 * 300.19896 * 15 14 13 43 43 H 1.08998 * 109.47237 * 289.99268 * 16 13 12 44 44 H 1.09002 * 109.47781 * 50.00181 * 16 13 12 45 45 H 0.97001 * 120.00198 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1987 0.4261 0.0005 6 6 5.5724 0.6110 0.0005 7 8 6.4033 -0.4644 -0.0001 8 6 7.8075 -0.1992 0.0005 9 6 6.0986 1.8953 0.0000 10 6 5.2545 2.9889 -0.0061 11 6 3.8845 2.8072 -0.0003 12 6 2.9665 4.0023 -0.0008 13 7 2.3882 4.1761 1.3384 14 6 3.3985 4.6581 2.2896 15 6 3.8833 6.0442 1.8598 16 6 1.2297 5.0785 1.2984 17 6 0.5182 5.0416 2.6264 18 1 0.8893 4.4105 3.4205 19 6 -0.6064 5.8134 2.8277 20 7 -1.0579 6.5822 1.8609 21 14 -1.4887 5.7671 4.4736 22 1 -0.5584 6.2020 5.5463 23 1 -2.6590 6.6803 4.4337 24 1 -1.9497 4.3827 4.7493 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7873 -0.5725 0.0008 31 1 8.0690 0.3724 0.8909 32 1 8.3552 -1.1417 -0.0005 33 1 8.0695 0.3738 -0.8890 34 1 7.1690 2.0399 -0.0004 35 1 5.6658 3.9875 -0.0112 36 1 2.1666 3.8458 -0.7245 37 1 3.5316 4.8944 -0.2711 38 1 2.9598 4.7194 3.2856 39 1 4.2413 3.9672 2.3057 40 1 3.0412 6.7360 1.8472 41 1 4.6356 6.4003 2.5636 42 1 4.3188 5.9836 0.8624 43 1 1.5676 6.0947 1.0955 44 1 0.5468 4.7585 0.5114 45 1 -1.8489 7.1255 2.0026 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -46.456886 kcal Electronic energy + Delta-G solvation = -24310.641515 eV Core-core repulsion = 20908.159554 eV Total energy + Delta-G solvation = -3402.481961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39621 -38.87171 -37.42662 -36.00915 -32.57336 -31.68681 -31.03513 -29.79949 -28.94560 -27.60009 -26.49601 -24.32870 -23.82220 -22.97300 -21.48388 -21.08336 -19.18523 -18.51763 -16.59525 -16.18722 -16.13921 -15.99023 -15.61851 -15.20718 -14.88878 -14.72286 -14.22691 -14.03177 -13.58835 -13.13605 -12.98871 -12.62753 -12.56118 -12.48657 -12.21008 -12.06746 -11.77823 -11.42773 -11.39234 -11.13572 -11.11169 -10.98287 -10.74321 -10.66919 -10.54941 -10.41190 -10.26606 -9.92851 -9.63606 -9.10820 -8.40579 -8.33625 -7.69088 -6.98491 -5.93480 -3.93263 1.53626 1.65751 3.17810 3.38306 3.41970 3.45376 3.54287 3.91648 4.50712 4.82815 5.00265 5.01540 5.07291 5.10999 5.14666 5.26296 5.30935 5.31574 5.40209 5.42351 5.56612 5.64536 5.71186 5.84697 5.89570 5.98632 6.02251 6.10985 6.22903 6.29944 6.34634 6.38349 6.53850 6.56917 6.71524 6.80552 6.87369 7.02480 7.36978 7.47095 7.54066 7.75183 7.91770 8.23752 8.38291 8.70081 9.14285 9.69870 11.17287 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.004429 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.400331 B = 6320.984514 C = 7311.078168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.283 6.283 4 C 0.194 3.806 5 C -0.249 4.249 6 C 0.154 3.846 7 O -0.321 6.321 8 C 0.030 3.970 9 C -0.249 4.249 10 C -0.042 4.042 11 C -0.128 4.128 12 C 0.100 3.900 13 N -0.522 5.522 14 C 0.062 3.938 15 C -0.189 4.189 16 C 0.191 3.809 17 C -0.498 4.498 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.043 0.957 43 H -0.003 1.003 44 H 0.028 0.972 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 -12.288 -5.609 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.195 6.195 4 C 0.146 3.854 5 C -0.269 4.269 6 C 0.108 3.892 7 O -0.235 6.235 8 C -0.066 4.066 9 C -0.268 4.268 10 C -0.061 4.061 11 C -0.129 4.129 12 C -0.028 4.028 13 N -0.245 5.245 14 C -0.067 4.067 15 C -0.247 4.247 16 C 0.067 3.933 17 C -0.537 4.537 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.046 0.954 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.354 -12.684 -5.487 19.218 hybrid contribution 0.114 0.763 0.633 0.998 sum 13.469 -11.921 -4.854 18.630 Atomic orbital electron populations 1.21749 0.92668 1.02153 1.04311 1.22758 0.96160 0.82461 1.00709 1.86329 1.17887 1.28161 1.87132 1.18441 0.82491 0.92432 0.92006 1.20330 0.90989 0.98993 1.16574 1.18591 0.89566 0.85795 0.95208 1.86023 1.17281 1.31284 1.88871 1.23004 0.79161 1.02968 1.01420 1.20974 0.99961 0.91731 1.14170 1.20643 0.91710 0.98254 0.95476 1.19290 0.93592 0.93026 1.07041 1.20803 0.95917 0.92387 0.93659 1.62294 1.07332 1.50483 1.04423 1.21940 0.94105 0.92498 0.98149 1.22394 1.01438 1.00888 1.00014 1.19761 0.86520 0.89254 0.97814 1.21119 1.10109 1.24050 0.98430 0.92143 1.24952 0.97267 0.95635 0.96745 1.69951 1.24193 1.27805 1.32152 0.86623 0.79048 0.77815 0.84272 1.20407 1.21485 1.20276 0.91587 0.90985 0.90731 0.92668 0.92268 0.85110 0.92655 0.88599 0.92742 0.85892 0.85591 0.90682 0.94785 0.90478 0.93181 0.91235 0.93676 0.93791 0.98548 0.95418 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 37.15 0.38 -1.51 16 2 C 0.05 0.73 5.46 37.15 0.20 0.93 16 3 O -0.28 -4.99 9.46 -19.41 -0.18 -5.17 16 4 C 0.19 3.27 6.66 -39.24 -0.26 3.01 16 5 C -0.25 -3.74 8.97 -39.29 -0.35 -4.10 16 6 C 0.15 2.17 6.68 -39.24 -0.26 1.91 16 7 O -0.32 -4.04 10.49 -19.43 -0.20 -4.24 16 8 C 0.03 0.24 9.81 101.05 0.99 1.24 16 9 C -0.25 -3.29 9.04 -39.41 -0.36 -3.64 16 10 C -0.04 -0.61 9.08 -39.63 -0.36 -0.97 16 11 C -0.13 -2.18 4.67 -104.45 -0.49 -2.67 16 12 C 0.10 1.92 4.58 -4.98 -0.02 1.90 16 13 N -0.52 -11.55 4.65 -237.52 -1.10 -12.66 16 14 C 0.06 1.24 5.73 -3.83 -0.02 1.22 16 15 C -0.19 -3.46 9.27 37.16 0.34 -3.12 16 16 C 0.19 5.03 4.48 -4.97 -0.02 5.00 16 17 C -0.50 -14.13 8.51 -34.44 -0.29 -14.42 16 18 H 0.06 1.72 7.11 -52.48 -0.37 1.34 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 29 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 30 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 31 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 34 H 0.12 1.29 6.29 -52.48 -0.33 0.96 16 35 H 0.13 1.62 8.00 -52.48 -0.42 1.20 16 36 H 0.07 1.51 7.67 -51.93 -0.40 1.12 16 37 H 0.03 0.62 5.72 -51.93 -0.30 0.32 16 38 H 0.08 1.69 6.85 -51.93 -0.36 1.33 16 39 H 0.05 0.93 6.92 -51.93 -0.36 0.57 16 40 H 0.07 1.48 6.30 -51.93 -0.33 1.15 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.74 6.25 -51.93 -0.32 0.41 16 43 H 0.00 -0.09 6.02 -51.93 -0.31 -0.40 16 44 H 0.03 0.79 7.87 -51.93 -0.41 0.38 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -31.71 358.37 -8.07 -39.78 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.08 Total: -0.05 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.62 Total: -13.75 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.37 Total: -38.91 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.39 Total: -9.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.71 -8.07 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.680 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds