Wall clock time and date at job start Tue Mar 31 2020 06:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47294 * 2 1 4 4 C 1.35896 * 117.00101 * 179.97438 * 3 2 1 5 5 C 1.38654 * 120.02544 * 0.02783 * 4 3 2 6 6 C 1.38615 * 119.88667 * 179.97438 * 5 4 3 7 7 O 1.35903 * 120.02521 * 180.02562 * 6 5 4 8 8 C 1.42896 * 116.99699 * 180.02562 * 7 6 5 9 9 C 1.38794 * 119.94708 * 359.97438 * 6 5 4 10 10 C 1.38151 * 120.05456 * 359.72973 * 9 6 5 11 11 C 1.38202 * 120.10904 * 0.54645 * 10 9 6 12 12 C 1.50694 * 119.97343 * 179.72476 * 11 10 9 13 13 N 1.46898 * 109.47362 * 254.95914 * 12 11 10 14 14 C 1.46894 * 110.99976 * 71.56246 * 13 12 11 15 15 C 1.53004 * 109.47054 * 63.47490 * 14 13 12 16 16 C 1.46898 * 110.99912 * 195.51999 * 13 12 11 17 17 C 1.50706 * 109.47205 * 169.99937 * 16 13 12 18 18 H 1.08005 * 119.99767 * 359.97438 * 17 16 13 19 19 C 1.37870 * 120.00362 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00222 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46752 * 59.99964 * 21 19 17 23 23 H 1.48498 * 109.47277 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46911 * 299.99782 * 21 19 17 25 25 H 1.09004 * 109.47565 * 59.99999 * 1 2 3 26 26 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47520 * 299.99884 * 1 2 3 28 28 H 1.08993 * 109.47224 * 240.00069 * 2 1 3 29 29 H 1.09007 * 109.47076 * 120.00135 * 2 1 3 30 30 H 1.07997 * 120.05861 * 359.95117 * 5 4 3 31 31 H 1.08993 * 109.47795 * 59.99873 * 8 7 6 32 32 H 1.09009 * 109.46844 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.47327 * 299.99738 * 8 7 6 34 34 H 1.08006 * 119.97166 * 180.02562 * 9 6 5 35 35 H 1.08003 * 119.94782 * 180.29325 * 10 9 6 36 36 H 1.09004 * 109.47345 * 134.95551 * 12 11 10 37 37 H 1.09004 * 109.47062 * 14.96097 * 12 11 10 38 38 H 1.09005 * 109.47114 * 183.46924 * 14 13 12 39 39 H 1.08994 * 109.47444 * 303.47066 * 14 13 12 40 40 H 1.08997 * 109.47774 * 60.19658 * 15 14 13 41 41 H 1.09001 * 109.47157 * 180.20259 * 15 14 13 42 42 H 1.09001 * 109.46636 * 300.19896 * 15 14 13 43 43 H 1.08998 * 109.47237 * 289.99268 * 16 13 12 44 44 H 1.09002 * 109.47781 * 50.00181 * 16 13 12 45 45 H 0.97001 * 120.00198 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1987 0.4261 0.0005 6 6 5.5724 0.6110 0.0005 7 8 6.4033 -0.4644 -0.0001 8 6 7.8075 -0.1992 0.0005 9 6 6.0986 1.8953 0.0000 10 6 5.2545 2.9889 -0.0061 11 6 3.8845 2.8072 -0.0003 12 6 2.9665 4.0023 -0.0008 13 7 2.3882 4.1761 1.3384 14 6 3.3985 4.6581 2.2896 15 6 3.8833 6.0442 1.8598 16 6 1.2297 5.0785 1.2984 17 6 0.5182 5.0416 2.6264 18 1 0.8893 4.4105 3.4205 19 6 -0.6064 5.8134 2.8277 20 7 -1.0579 6.5822 1.8609 21 14 -1.4887 5.7671 4.4736 22 1 -0.5584 6.2020 5.5463 23 1 -2.6590 6.6803 4.4337 24 1 -1.9497 4.3827 4.7493 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7873 -0.5725 0.0008 31 1 8.0690 0.3724 0.8909 32 1 8.3552 -1.1417 -0.0005 33 1 8.0695 0.3738 -0.8890 34 1 7.1690 2.0399 -0.0004 35 1 5.6658 3.9875 -0.0112 36 1 2.1666 3.8458 -0.7245 37 1 3.5316 4.8944 -0.2711 38 1 2.9598 4.7194 3.2856 39 1 4.2413 3.9672 2.3057 40 1 3.0412 6.7360 1.8472 41 1 4.6356 6.4003 2.5636 42 1 4.3188 5.9836 0.8624 43 1 1.5676 6.0947 1.0955 44 1 0.5468 4.7585 0.5114 45 1 -1.8489 7.1255 2.0026 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:59 Heat of formation + Delta-G solvation = -66.765029 kcal Electronic energy + Delta-G solvation = -24311.522142 eV Core-core repulsion = 20908.159554 eV Total energy + Delta-G solvation = -3403.362588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51334 -39.92116 -38.97446 -37.27654 -34.70786 -32.80939 -32.24692 -31.13817 -30.53012 -28.73916 -27.95027 -25.81508 -24.92847 -24.89062 -22.57867 -22.40054 -20.81193 -19.57514 -18.32560 -17.69321 -17.26321 -17.11365 -16.75963 -16.50031 -16.41449 -16.27000 -15.86587 -15.31709 -14.83721 -14.57433 -14.30543 -14.13205 -13.91236 -13.55204 -13.40625 -13.13931 -13.09140 -13.00735 -12.85613 -12.69273 -12.65029 -12.44048 -12.40123 -12.14601 -11.93052 -11.82472 -11.63068 -11.46458 -11.32846 -11.18340 -10.55432 -9.51562 -8.88631 -8.74028 -8.14336 -6.23320 0.40393 0.52041 1.40531 1.43844 1.51556 2.25200 2.42743 2.51103 2.75895 3.17231 3.58057 3.83250 3.98410 4.08628 4.12065 4.15026 4.28125 4.32397 4.39390 4.42828 4.45577 4.48686 4.58233 4.59747 4.61967 4.73193 4.79230 4.81824 4.92460 4.96394 5.02957 5.04155 5.21881 5.26561 5.29494 5.38851 5.43433 5.54378 5.56546 5.71541 5.73247 6.14302 6.41260 6.50094 6.61459 6.78080 6.93226 7.45284 8.95867 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.004429 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.400331 B = 6320.984514 C = 7311.078168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.318 6.318 4 C 0.176 3.824 5 C -0.257 4.257 6 C 0.156 3.844 7 O -0.333 6.333 8 C 0.018 3.982 9 C -0.241 4.241 10 C -0.037 4.037 11 C -0.155 4.155 12 C 0.109 3.891 13 N -0.532 5.532 14 C 0.065 3.935 15 C -0.178 4.178 16 C 0.210 3.790 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.271 1.271 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.142 0.858 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.061 0.939 43 H -0.023 1.023 44 H -0.009 1.009 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.397 -13.592 -4.906 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.231 6.231 4 C 0.129 3.871 5 C -0.276 4.276 6 C 0.110 3.890 7 O -0.246 6.246 8 C -0.076 4.076 9 C -0.260 4.260 10 C -0.056 4.056 11 C -0.156 4.156 12 C -0.019 4.019 13 N -0.255 5.255 14 C -0.063 4.063 15 C -0.236 4.236 16 C 0.084 3.916 17 C -0.552 4.552 18 H 0.074 0.926 19 C -0.195 4.195 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.079 0.921 43 H -0.005 1.005 44 H 0.010 0.990 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.870 -14.006 -4.787 21.701 hybrid contribution -0.527 1.061 0.354 1.236 sum 15.344 -12.944 -4.434 20.558 Atomic orbital electron populations 1.21774 0.92393 1.03828 1.02538 1.22989 0.96402 0.81210 1.01991 1.86288 1.18796 1.30534 1.87527 1.18635 0.82476 0.93096 0.92858 1.20443 0.91618 0.98903 1.16682 1.18737 0.89562 0.86709 0.93981 1.86023 1.19272 1.30944 1.88403 1.23370 0.76840 1.04945 1.02465 1.21278 1.01437 0.90769 1.12515 1.20845 0.90584 0.99757 0.94392 1.19195 0.94354 0.92020 1.10079 1.20673 0.95682 0.94153 0.91346 1.62177 1.07360 1.49277 1.06675 1.21912 0.93927 0.94112 0.96385 1.22263 1.00754 0.98780 1.01827 1.19354 0.87576 0.88837 0.95828 1.21384 1.10708 1.24045 0.99043 0.92570 1.25833 0.97987 0.95060 1.00603 1.70083 1.24703 1.28510 1.34317 0.85529 0.77920 0.78070 0.79653 1.19273 1.20798 1.19636 0.92361 0.87552 0.93399 0.90570 0.91582 0.84058 0.91711 0.86214 0.91452 0.82620 0.83703 0.93146 0.93780 0.92789 0.90867 0.94809 0.90836 0.92062 1.00499 0.99043 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 10.28 71.98 0.74 -3.04 16 2 C 0.05 1.31 5.46 71.98 0.39 1.71 16 3 O -0.32 -11.66 9.46 -92.38 -0.87 -12.53 16 4 C 0.18 5.98 6.66 22.49 0.15 6.13 16 5 C -0.26 -7.42 8.97 22.46 0.20 -7.22 16 6 C 0.16 4.01 6.68 22.49 0.15 4.16 16 7 O -0.33 -7.35 10.49 -92.46 -0.97 -8.32 16 8 C 0.02 0.22 9.81 113.37 1.11 1.34 16 9 C -0.24 -5.55 9.04 22.38 0.20 -5.35 16 10 C -0.04 -0.99 9.08 22.24 0.20 -0.79 16 11 C -0.16 -5.23 4.67 -19.75 -0.09 -5.32 16 12 C 0.11 4.31 4.58 85.56 0.39 4.70 16 13 N -0.53 -24.37 4.65 -905.38 -4.21 -28.58 16 14 C 0.06 2.61 5.73 86.31 0.49 3.10 16 15 C -0.18 -6.41 9.27 71.98 0.67 -5.74 16 16 C 0.21 11.67 4.48 85.56 0.38 12.05 16 17 C -0.51 -30.17 8.51 25.60 0.22 -29.95 16 18 H 0.06 3.28 7.11 -2.91 -0.02 3.26 16 19 C 0.00 0.16 5.46 84.65 0.46 0.62 16 20 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 21 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.08 1.70 7.66 -2.39 -0.02 1.68 16 29 H 0.07 1.65 7.66 -2.38 -0.02 1.63 16 30 H 0.14 3.62 6.30 -2.91 -0.02 3.60 16 31 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 32 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 34 H 0.16 2.51 6.29 -2.91 -0.02 2.49 16 35 H 0.15 3.24 8.00 -2.91 -0.02 3.21 16 36 H 0.05 2.19 7.67 -2.38 -0.02 2.17 16 37 H 0.04 1.61 5.72 -2.38 -0.01 1.60 16 38 H 0.05 2.40 6.85 -2.38 -0.02 2.38 16 39 H 0.07 2.61 6.92 -2.39 -0.02 2.59 16 40 H 0.03 1.45 6.30 -2.39 -0.02 1.44 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.06 1.97 6.25 -2.39 -0.01 1.96 16 43 H -0.02 -1.32 6.02 -2.39 -0.01 -1.33 16 44 H -0.01 -0.53 7.87 -2.39 -0.02 -0.55 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -71.35 358.37 2.90 -68.45 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.97 Total: 14.37 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 5.68 Total: -23.61 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.93 Total: -86.05 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.84 Total: -20.85 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.35 2.90 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.682 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds