Wall clock time and date at job start Tue Mar 31 2020 07:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48502 * 109.47311 * 270.00192 * 3 2 1 5 5 H 1.48502 * 109.47171 * 30.00478 * 3 2 1 6 6 H 1.48504 * 109.47159 * 150.00149 * 3 2 1 7 7 C 1.37869 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99618 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00573 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47442 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46965 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46945 * 179.97438 * 11 10 9 13 13 C 1.39866 * 126.04103 * 89.97749 * 12 11 10 14 14 N 1.30844 * 108.20609 * 180.02562 * 13 12 11 15 15 N 1.40083 * 108.20198 * 359.97438 * 14 13 12 16 16 C 1.46504 * 126.03812 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47110 * 305.02846 * 16 15 14 18 18 N 1.46899 * 109.47282 * 179.97438 * 17 16 15 19 19 C 1.47009 * 110.99990 * 293.63343 * 18 17 16 20 20 C 1.53091 * 109.25968 * 177.60660 * 19 18 17 21 21 O 1.43011 * 109.26205 * 56.84688 * 20 19 18 22 22 C 1.43016 * 113.73881 * 301.33601 * 21 20 19 23 23 C 1.47011 * 111.00124 * 169.99852 * 18 17 16 24 24 C 1.34951 * 107.92726 * 359.97438 * 15 14 13 25 25 H 0.96991 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47087 * 59.99298 * 9 7 2 27 27 H 1.09005 * 109.46905 * 299.99564 * 9 7 2 28 28 H 1.08998 * 109.46994 * 59.99700 * 10 9 7 29 29 H 1.09000 * 109.46849 * 299.99225 * 10 9 7 30 30 H 1.08998 * 109.47151 * 60.00235 * 11 10 9 31 31 H 1.08998 * 109.47571 * 300.00099 * 11 10 9 32 32 H 1.08004 * 125.89969 * 0.05889 * 13 12 11 33 33 H 1.09001 * 109.46936 * 65.02250 * 16 15 14 34 34 H 1.08995 * 109.47043 * 185.02459 * 16 15 14 35 35 H 1.09001 * 109.46735 * 299.99527 * 17 16 15 36 36 H 1.08996 * 109.47207 * 59.99409 * 17 16 15 37 37 H 1.08997 * 109.50796 * 297.54365 * 19 18 17 38 38 H 1.09005 * 109.50719 * 57.66804 * 19 18 17 39 39 H 1.09000 * 109.50819 * 296.91016 * 20 19 18 40 40 H 1.09002 * 109.54612 * 176.80571 * 20 19 18 41 41 H 1.09009 * 109.50164 * 298.73109 * 22 21 20 42 42 H 1.09002 * 109.54484 * 178.62361 * 22 21 20 43 43 H 1.09004 * 109.50407 * 302.32212 * 23 18 17 44 44 H 1.08996 * 109.50829 * 62.41178 * 23 18 17 45 45 H 1.07996 * 126.12664 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0541 -4.0571 0.0004 13 6 6.3279 -4.8335 -1.1303 14 7 6.7428 -6.0078 -0.7291 15 7 6.7466 -6.0155 0.6717 16 6 7.1427 -7.1375 1.5264 17 6 6.3268 -8.3765 1.1523 18 7 6.7245 -9.5017 2.0089 19 6 8.1105 -9.9081 1.7351 20 6 8.5023 -11.0404 2.6880 21 8 7.5808 -12.1236 2.5378 22 6 6.2213 -11.7633 2.7975 23 6 5.8064 -10.6383 1.8457 24 6 6.3208 -4.8068 1.0949 25 1 -0.4849 0.8400 0.0004 26 1 3.8746 -0.6806 0.8904 27 1 3.8753 -0.6796 -0.8895 28 1 3.6587 -3.1501 -0.8903 29 1 3.6581 -3.1504 0.8897 30 1 5.9150 -2.1226 0.8899 31 1 5.9150 -2.1224 -0.8900 32 1 6.2167 -4.5181 -2.1572 33 1 8.2035 -7.3448 1.3852 34 1 6.9581 -6.8822 2.5698 35 1 5.2660 -8.1691 1.2935 36 1 6.5114 -8.6317 0.1089 37 1 8.1913 -10.2550 0.7050 38 1 8.7758 -9.0580 1.8868 39 1 8.4733 -10.6778 3.7156 40 1 9.5094 -11.3839 2.4516 41 1 6.1260 -11.4216 3.8283 42 1 5.5781 -12.6291 2.6401 43 1 4.7898 -10.3212 2.0782 44 1 5.8498 -10.9963 0.8171 45 1 6.2111 -4.4945 2.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:58 Heat of formation + Delta-G solvation = 26.415336 kcal Electronic energy + Delta-G solvation = -22610.323300 eV Core-core repulsion = 19243.294066 eV Total energy + Delta-G solvation = -3367.029233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13240 -39.98698 -36.72994 -34.95434 -33.39690 -32.22499 -31.66358 -30.22815 -29.62091 -27.27004 -25.99291 -24.53004 -23.20725 -22.86125 -20.92355 -20.61064 -20.16696 -19.64397 -17.41193 -16.73026 -16.59714 -16.38944 -15.88723 -15.53665 -15.41226 -14.77120 -14.41394 -14.28726 -14.11563 -14.03537 -13.54431 -13.05564 -12.85326 -12.71712 -12.56140 -12.44340 -12.00177 -11.94652 -11.83598 -11.49194 -11.41566 -11.02837 -10.95259 -10.78095 -10.39432 -10.17142 -9.84510 -9.62439 -9.59561 -9.32200 -9.12568 -8.93766 -8.48775 -8.08966 -5.99382 -3.96666 1.96178 2.41694 2.99169 3.30552 3.34175 3.41223 3.44462 3.45364 4.26914 4.37013 4.44331 4.48281 4.49653 4.68551 4.79253 4.84297 4.91351 4.93537 5.04630 5.07018 5.17797 5.30860 5.34060 5.34915 5.36267 5.45575 5.51375 5.57052 5.68807 5.95959 6.12148 6.23826 6.34819 6.35501 6.39390 6.66707 6.73683 6.79696 6.84884 7.01943 7.11662 7.41807 7.53474 7.79765 7.86376 8.60717 9.06557 9.63667 11.14337 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.002246 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.643505 B =12462.651646 C =13018.171208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.070 0.930 9 C -0.016 4.016 10 C -0.094 4.094 11 C -0.047 4.047 12 C -0.216 4.216 13 C 0.053 3.947 14 N -0.305 5.305 15 N -0.380 5.380 16 C 0.144 3.856 17 C 0.044 3.956 18 N -0.536 5.536 19 C 0.011 3.989 20 C 0.064 3.936 21 O -0.386 6.386 22 C 0.064 3.936 23 C 0.018 3.982 24 C 0.050 3.950 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.627 -21.245 5.845 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.088 0.912 9 C -0.053 4.053 10 C -0.132 4.132 11 C -0.086 4.086 12 C -0.227 4.227 13 C -0.133 4.133 14 N -0.126 5.126 15 N -0.164 5.164 16 C 0.021 3.979 17 C -0.084 4.084 18 N -0.261 5.261 19 C -0.117 4.117 20 C -0.013 4.013 21 O -0.305 6.305 22 C -0.013 4.013 23 C -0.110 4.110 24 C -0.095 4.095 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.198 0.802 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 18.955 -22.442 6.027 29.988 hybrid contribution -0.118 1.802 -0.555 1.889 sum 18.837 -20.640 5.472 28.475 Atomic orbital electron populations 1.69926 1.06322 1.26772 1.51582 1.25062 0.94737 0.99215 0.94725 0.86758 0.80353 0.83580 0.78466 1.20345 1.21529 1.18961 1.21193 0.89758 0.94341 1.50266 0.91191 1.19609 0.96934 0.92680 0.96109 1.21440 0.91560 0.99219 1.01015 1.20093 0.97179 0.89506 1.01777 1.20352 1.11151 0.99669 0.91504 1.23829 0.98513 0.90900 1.00058 1.77236 1.24903 1.21734 0.88743 1.48389 1.52551 1.10778 1.04664 1.21505 0.99131 0.84054 0.93171 1.22340 1.00431 0.89790 0.95836 1.62141 1.02436 1.07138 1.54415 1.22906 0.90501 0.99232 0.99065 1.22668 0.93192 0.86679 0.98760 1.87996 1.16767 1.34828 1.90890 1.22680 0.83144 0.97160 0.98296 1.22798 0.97397 0.91374 0.99429 1.22332 1.00936 0.85986 1.00219 0.92851 0.96745 0.97096 0.92961 0.93128 0.92022 0.91696 0.80213 0.90271 0.87966 0.89773 0.92878 0.93517 0.89363 0.92100 0.88341 0.92048 0.88240 0.89234 0.93601 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.09 -1.88 5.14 -26.73 -0.14 -2.02 16 11 C -0.05 -0.75 5.70 -27.88 -0.16 -0.90 16 12 C -0.22 -3.17 5.35 -105.05 -0.56 -3.73 16 13 C 0.05 0.76 11.96 -17.36 -0.21 0.56 16 14 N -0.30 -4.43 12.42 30.63 0.38 -4.05 16 15 N -0.38 -4.74 3.68 -61.36 -0.23 -4.97 16 16 C 0.14 1.29 6.45 -4.04 -0.03 1.26 16 17 C 0.04 0.41 5.14 -3.82 -0.02 0.39 16 18 N -0.54 -4.26 4.73 -234.32 -1.11 -5.36 16 19 C 0.01 0.08 5.44 -3.72 -0.02 0.06 16 20 C 0.06 0.42 7.01 37.20 0.26 0.68 16 21 O -0.39 -3.34 10.83 -35.23 -0.38 -3.73 16 22 C 0.06 0.44 7.01 37.21 0.26 0.70 16 23 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 24 C 0.05 0.64 11.36 -17.22 -0.20 0.45 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.18 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.08 0.64 6.51 -51.93 -0.34 0.30 16 34 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 36 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.52 6.38 -51.93 -0.33 0.19 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -33.71 363.01 -8.90 -42.61 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.77 Total: -3.13 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.37 Total: -16.50 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.18 Total: -42.00 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.38 Total: -3.73 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.71 -8.90 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.029 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds