Wall clock time and date at job start Tue Mar 31 2020 07:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48502 * 109.47311 * 270.00192 * 3 2 1 5 5 H 1.48502 * 109.47171 * 30.00478 * 3 2 1 6 6 H 1.48504 * 109.47159 * 150.00149 * 3 2 1 7 7 C 1.37869 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99618 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00573 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47442 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46965 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.46945 * 179.97438 * 11 10 9 13 13 C 1.39866 * 126.04103 * 89.97749 * 12 11 10 14 14 N 1.30844 * 108.20609 * 180.02562 * 13 12 11 15 15 N 1.40083 * 108.20198 * 359.97438 * 14 13 12 16 16 C 1.46504 * 126.03812 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47110 * 305.02846 * 16 15 14 18 18 N 1.46899 * 109.47282 * 179.97438 * 17 16 15 19 19 C 1.47009 * 110.99990 * 293.63343 * 18 17 16 20 20 C 1.53091 * 109.25968 * 177.60660 * 19 18 17 21 21 O 1.43011 * 109.26205 * 56.84688 * 20 19 18 22 22 C 1.43016 * 113.73881 * 301.33601 * 21 20 19 23 23 C 1.47011 * 111.00124 * 169.99852 * 18 17 16 24 24 C 1.34951 * 107.92726 * 359.97438 * 15 14 13 25 25 H 0.96991 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47087 * 59.99298 * 9 7 2 27 27 H 1.09005 * 109.46905 * 299.99564 * 9 7 2 28 28 H 1.08998 * 109.46994 * 59.99700 * 10 9 7 29 29 H 1.09000 * 109.46849 * 299.99225 * 10 9 7 30 30 H 1.08998 * 109.47151 * 60.00235 * 11 10 9 31 31 H 1.08998 * 109.47571 * 300.00099 * 11 10 9 32 32 H 1.08004 * 125.89969 * 0.05889 * 13 12 11 33 33 H 1.09001 * 109.46936 * 65.02250 * 16 15 14 34 34 H 1.08995 * 109.47043 * 185.02459 * 16 15 14 35 35 H 1.09001 * 109.46735 * 299.99527 * 17 16 15 36 36 H 1.08996 * 109.47207 * 59.99409 * 17 16 15 37 37 H 1.08997 * 109.50796 * 297.54365 * 19 18 17 38 38 H 1.09005 * 109.50719 * 57.66804 * 19 18 17 39 39 H 1.09000 * 109.50819 * 296.91016 * 20 19 18 40 40 H 1.09002 * 109.54612 * 176.80571 * 20 19 18 41 41 H 1.09009 * 109.50164 * 298.73109 * 22 21 20 42 42 H 1.09002 * 109.54484 * 178.62361 * 22 21 20 43 43 H 1.09004 * 109.50407 * 302.32212 * 23 18 17 44 44 H 1.08996 * 109.50829 * 62.41178 * 23 18 17 45 45 H 1.07996 * 126.12664 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0541 -4.0571 0.0004 13 6 6.3279 -4.8335 -1.1303 14 7 6.7428 -6.0078 -0.7291 15 7 6.7466 -6.0155 0.6717 16 6 7.1427 -7.1375 1.5264 17 6 6.3268 -8.3765 1.1523 18 7 6.7245 -9.5017 2.0089 19 6 8.1105 -9.9081 1.7351 20 6 8.5023 -11.0404 2.6880 21 8 7.5808 -12.1236 2.5378 22 6 6.2213 -11.7633 2.7975 23 6 5.8064 -10.6383 1.8457 24 6 6.3208 -4.8068 1.0949 25 1 -0.4849 0.8400 0.0004 26 1 3.8746 -0.6806 0.8904 27 1 3.8753 -0.6796 -0.8895 28 1 3.6587 -3.1501 -0.8903 29 1 3.6581 -3.1504 0.8897 30 1 5.9150 -2.1226 0.8899 31 1 5.9150 -2.1224 -0.8900 32 1 6.2167 -4.5181 -2.1572 33 1 8.2035 -7.3448 1.3852 34 1 6.9581 -6.8822 2.5698 35 1 5.2660 -8.1691 1.2935 36 1 6.5114 -8.6317 0.1089 37 1 8.1913 -10.2550 0.7050 38 1 8.7758 -9.0580 1.8868 39 1 8.4733 -10.6778 3.7156 40 1 9.5094 -11.3839 2.4516 41 1 6.1260 -11.4216 3.8283 42 1 5.5781 -12.6291 2.6401 43 1 4.7898 -10.3212 2.0782 44 1 5.8498 -10.9963 0.8171 45 1 6.2111 -4.4945 2.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:58 Heat of formation + Delta-G solvation = 3.671489 kcal Electronic energy + Delta-G solvation = -22611.309547 eV Core-core repulsion = 19243.294066 eV Total energy + Delta-G solvation = -3368.015480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13620 -40.58753 -37.42705 -36.49159 -34.71379 -33.88160 -32.21812 -31.60423 -30.61784 -28.49547 -27.05864 -25.09405 -24.69702 -23.79876 -21.93636 -21.63249 -21.42078 -20.77109 -18.85236 -18.13413 -17.28452 -17.18087 -16.61849 -16.28623 -16.16102 -16.02282 -15.78099 -15.52687 -15.07615 -14.96525 -14.79798 -14.34595 -14.03582 -13.87681 -13.79051 -13.43639 -13.17735 -13.07927 -12.70546 -12.55054 -12.44890 -12.38988 -12.11049 -11.75956 -11.69630 -11.54902 -11.38737 -11.25985 -11.15675 -10.76626 -10.72288 -10.31186 -9.60687 -9.19171 -8.25884 -6.29853 0.96027 1.39641 1.41615 1.54266 1.55515 1.89985 2.40318 2.65809 2.92116 3.09710 3.54171 3.66748 3.86902 3.90176 4.03065 4.09215 4.14278 4.21178 4.26897 4.30005 4.33792 4.45880 4.53128 4.54436 4.64847 4.68504 4.73988 4.77410 4.81058 4.85696 4.94542 4.97568 5.02314 5.20835 5.26811 5.36737 5.64689 5.67095 5.71105 5.75057 5.77208 5.81040 6.13775 6.17993 6.34413 6.76515 6.79021 7.34736 8.91324 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.002246 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.643505 B =12462.651646 C =13018.171208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.532 4.532 8 H 0.025 0.975 9 C -0.014 4.014 10 C -0.085 4.085 11 C -0.032 4.032 12 C -0.241 4.241 13 C 0.042 3.958 14 N -0.329 5.329 15 N -0.377 5.377 16 C 0.141 3.859 17 C 0.055 3.945 18 N -0.533 5.533 19 C 0.011 3.989 20 C 0.062 3.938 21 O -0.407 6.407 22 C 0.065 3.935 23 C 0.016 3.984 24 C 0.059 3.941 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.192 0.808 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.034 0.966 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.136 -20.643 7.051 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.570 4.570 8 H 0.043 0.957 9 C -0.051 4.051 10 C -0.123 4.123 11 C -0.071 4.071 12 C -0.253 4.253 13 C -0.143 4.143 14 N -0.151 5.151 15 N -0.160 5.160 16 C 0.020 3.980 17 C -0.074 4.074 18 N -0.259 5.259 19 C -0.117 4.117 20 C -0.014 4.014 21 O -0.326 6.326 22 C -0.012 4.012 23 C -0.112 4.112 24 C -0.087 4.087 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.209 0.791 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.052 0.948 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 21.489 -21.879 7.232 31.508 hybrid contribution -0.968 1.469 -0.904 1.977 sum 20.521 -20.410 6.328 29.627 Atomic orbital electron populations 1.70095 1.08481 1.28113 1.53077 1.26129 0.95683 1.03878 0.94183 0.85572 0.79622 0.77696 0.79229 1.19211 1.21191 1.16355 1.21585 0.92671 0.92794 1.49990 0.95699 1.19583 0.93329 0.95492 0.96696 1.21292 0.94828 0.96338 0.99872 1.19865 0.93581 0.90783 1.02824 1.20307 1.13147 0.99480 0.92323 1.24105 0.98428 0.90914 1.00847 1.77202 1.25750 1.21987 0.90143 1.48655 1.51594 1.11459 1.04281 1.21769 0.99701 0.82898 0.93662 1.22162 0.99851 0.90527 0.94882 1.62193 1.03037 1.06988 1.53658 1.22966 0.90151 1.00038 0.98515 1.22809 0.93567 0.86075 0.98968 1.87969 1.17632 1.35978 1.91051 1.22770 0.82755 0.97401 0.98264 1.22847 0.97735 0.91537 0.99047 1.22780 0.99104 0.85681 1.01138 0.92619 0.95780 0.96158 0.94476 0.94058 0.90639 0.90971 0.79147 0.88967 0.85668 0.90906 0.94974 0.94862 0.87908 0.91349 0.86813 0.91461 0.86928 0.88704 0.94787 0.78361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.00 -0.17 5.47 84.65 0.46 0.29 16 3 Si 0.96 44.50 27.47 68.60 1.88 46.38 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 7 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 8 H 0.02 1.63 7.99 -2.91 -0.02 1.61 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.09 -3.34 5.14 30.59 0.16 -3.18 16 11 C -0.03 -0.95 5.70 29.85 0.17 -0.78 16 12 C -0.24 -6.67 5.35 -20.14 -0.11 -6.78 16 13 C 0.04 1.18 11.96 85.23 1.02 2.20 16 14 N -0.33 -9.29 12.42 -57.02 -0.71 -10.00 16 15 N -0.38 -8.73 3.68 -348.06 -1.28 -10.01 16 16 C 0.14 2.22 6.45 86.38 0.56 2.78 16 17 C 0.05 0.95 5.14 86.30 0.44 1.40 16 18 N -0.53 -7.86 4.73 -895.26 -4.23 -12.09 16 19 C 0.01 0.14 5.44 86.31 0.47 0.61 16 20 C 0.06 0.72 7.01 72.01 0.50 1.22 16 21 O -0.41 -6.59 10.83 -148.98 -1.61 -8.20 16 22 C 0.06 0.81 7.01 72.01 0.50 1.32 16 23 C 0.02 0.23 5.64 86.31 0.49 0.72 16 24 C 0.06 1.38 11.36 83.54 0.95 2.33 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 26 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 27 H 0.02 0.91 7.57 -2.38 -0.02 0.89 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.09 1.25 6.51 -2.39 -0.02 1.24 16 34 H 0.13 1.44 8.07 -2.39 -0.02 1.42 16 35 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 36 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.98 6.38 -2.38 -0.02 0.97 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.20 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -73.89 363.01 1.22 -72.66 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.89 Total: 11.84 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 5.99 Total: -29.59 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -5.92 Total: -93.09 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -1.61 Total: -8.20 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -73.89 1.22 -72.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.335 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds