Wall clock time and date at job start Tue Mar 31 2020 06:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 C 1.50705 * 109.46905 * 119.99714 * 2 1 3 5 5 H 1.07997 * 119.99777 * 119.99988 * 4 2 1 6 6 C 1.37880 * 120.00042 * 299.99829 * 4 2 1 7 7 N 1.31520 * 119.99652 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47184 * 89.99786 * 8 6 4 10 10 H 1.48497 * 109.47029 * 210.00443 * 8 6 4 11 11 H 1.48502 * 109.46993 * 330.00048 * 8 6 4 12 12 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 13 13 C 1.46898 * 110.99589 * 84.99775 * 12 2 1 14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 C 1.53002 * 109.47338 * 185.00117 * 17 14 13 19 19 O 1.42896 * 109.47092 * 179.97438 * 18 17 14 20 20 C 1.42901 * 113.99951 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.47013 * 179.97438 * 20 19 18 22 22 C 1.38225 * 120.00073 * 269.72669 * 21 20 19 23 23 C 1.38234 * 120.00301 * 179.76684 * 22 21 20 24 24 C 1.38240 * 119.99507 * 0.50914 * 23 22 21 25 25 C 1.38234 * 119.99976 * 359.74505 * 24 23 22 26 26 C 1.38234 * 120.00143 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 29 29 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 30 30 H 0.96998 * 119.99577 * 180.02562 * 7 6 4 31 31 H 1.00904 * 110.99777 * 321.05042 * 12 2 1 32 32 H 1.08999 * 109.47049 * 60.00398 * 13 12 2 33 33 H 1.08997 * 109.47646 * 300.00448 * 13 12 2 34 34 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 35 35 H 1.09005 * 109.46682 * 304.99749 * 17 14 13 36 36 H 1.08999 * 109.47221 * 64.99915 * 17 14 13 37 37 H 1.09005 * 109.46490 * 299.99775 * 18 17 14 38 38 H 1.08999 * 109.47130 * 59.99742 * 18 17 14 39 39 H 1.09002 * 109.46914 * 299.99909 * 20 19 18 40 40 H 1.09000 * 109.47151 * 60.00262 * 20 19 18 41 41 H 1.08008 * 119.99989 * 359.97438 * 22 21 20 42 42 H 1.07998 * 120.00428 * 180.22880 * 23 22 21 43 43 H 1.07999 * 119.99851 * 179.72917 * 24 23 22 44 44 H 1.07998 * 119.99879 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99872 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4879 -2.5651 3.7124 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5951 -0.5334 -3.5744 15 1 1.9184 -1.3568 -3.8028 16 8 3.9000 -1.0499 -3.3051 17 6 2.6611 0.4197 -4.7694 18 6 3.0537 -0.3623 -6.0245 19 8 3.1147 0.5278 -7.1407 20 6 3.4757 -0.1053 -8.3699 21 6 3.5086 0.9211 -9.4729 22 6 2.3697 1.1769 -10.2132 23 6 2.3985 2.1218 -11.2217 24 6 3.5693 2.8034 -11.4969 25 6 4.7097 2.5439 -10.7600 26 6 4.6793 1.6031 -9.7476 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7087 1.1615 3.4843 31 1 1.4496 -1.4980 -1.4099 32 1 2.7588 1.0460 -2.1182 33 1 1.0871 0.6162 -2.5525 34 1 4.5557 -0.3714 -3.0934 35 1 1.6854 0.8819 -4.9198 36 1 3.4039 1.1937 -4.5764 37 1 4.0294 -0.8245 -5.8741 38 1 2.3109 -1.1363 -6.2176 39 1 4.4605 -0.5615 -8.2681 40 1 2.7422 -0.8744 -8.6116 41 1 1.4563 0.6408 -10.0014 42 1 1.5077 2.3243 -11.7977 43 1 3.5930 3.5385 -12.2877 44 1 5.6244 3.0761 -10.9752 45 1 5.5704 1.4000 -9.1722 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253293168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:02 Heat of formation + Delta-G solvation = -82.368379 kcal Electronic energy + Delta-G solvation = -22259.578921 eV Core-core repulsion = 18855.539721 eV Total energy + Delta-G solvation = -3404.039200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67904 -38.37845 -37.32570 -35.37175 -32.78331 -32.41668 -31.29434 -31.21822 -29.00386 -26.59040 -25.51358 -25.04310 -22.90001 -22.40640 -21.67723 -21.16725 -20.09001 -17.27068 -16.73721 -16.64994 -16.45254 -15.80479 -15.68049 -15.41498 -14.80122 -14.75493 -14.32863 -13.89556 -13.74813 -13.72356 -13.16649 -13.01732 -12.73145 -12.54237 -12.46668 -11.77861 -11.53920 -11.47324 -11.38788 -11.22505 -11.18129 -10.91917 -10.78353 -10.54337 -10.49227 -10.11990 -10.05925 -9.77797 -9.53065 -9.23348 -9.14924 -8.94062 -8.33839 -7.17431 -5.96116 -3.98983 0.94766 1.08929 3.23868 3.34982 3.40797 3.45674 3.78064 4.44015 4.49560 4.50394 4.66355 4.70507 4.79907 4.90375 4.96490 5.01737 5.11301 5.14505 5.23133 5.33186 5.35368 5.37964 5.42969 5.64610 5.67275 5.71899 5.77911 5.94061 6.01612 6.12399 6.18208 6.20087 6.28239 6.42451 6.66018 6.69516 6.84314 7.01856 7.10589 7.36790 7.75199 7.91166 7.97845 8.29832 8.56420 8.64814 9.08903 9.66279 11.11003 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040186 B = 0.001989 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.590343 B =14075.902356 C =14285.942689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.030 3.970 14 C 0.114 3.886 15 H 0.092 0.908 16 O -0.550 6.550 17 C -0.149 4.149 18 C 0.066 3.934 19 O -0.384 6.384 20 C 0.102 3.898 21 C -0.088 4.088 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.099 4.099 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.004 0.996 30 H 0.259 0.741 31 H 0.325 0.675 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.373 0.627 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 1.631 -27.275 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.304 5.304 13 C -0.100 4.100 14 C 0.055 3.945 15 H 0.110 0.890 16 O -0.354 6.354 17 C -0.187 4.187 18 C -0.010 4.010 19 O -0.304 6.304 20 C 0.026 3.974 21 C -0.089 4.089 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.117 4.117 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.023 0.977 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.219 0.781 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.631 1.450 -27.052 27.483 hybrid contribution -0.530 0.124 0.736 0.915 sum 4.101 1.574 -26.316 26.680 Atomic orbital electron populations 1.22441 1.00811 0.99190 1.00447 1.19194 0.89527 0.94356 0.86694 0.95047 1.21173 1.29985 1.12395 0.89551 0.91880 1.24973 0.95395 0.95277 0.99093 1.69890 1.37417 1.23318 1.23289 0.86488 0.78400 0.80043 0.82389 1.20790 1.21470 1.19929 1.60726 1.58072 1.08607 1.02965 1.22564 0.99094 0.96427 0.91945 1.21842 0.85573 0.95606 0.91522 0.88992 1.86546 1.19154 1.37744 1.91974 1.22250 1.03375 0.99396 0.93714 1.22484 1.00691 0.92268 0.85560 1.87948 1.90562 1.35804 1.16108 1.21278 0.99826 0.93054 0.83239 1.19654 0.94123 0.98579 0.96500 1.21093 0.97593 0.97707 0.95362 1.21162 0.98226 0.96730 0.98102 1.21208 0.93121 0.99512 0.99643 1.21165 0.98572 0.98264 0.96209 1.21100 0.97800 0.95634 0.97169 0.95328 0.89249 0.97714 0.93127 0.85874 0.91459 0.95667 0.78058 0.90416 0.90727 0.92420 0.93419 0.92414 0.92518 0.85915 0.85910 0.86038 0.85895 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.32 2.57 -68.86 -0.18 5.14 16 3 H 0.03 0.87 7.80 -51.93 -0.40 0.47 16 4 C -0.49 -13.81 8.84 -34.44 -0.30 -14.11 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.67 -14.35 6.10 -107.95 -0.66 -15.00 16 13 C 0.03 0.52 5.15 -3.82 -0.02 0.50 16 14 C 0.11 1.59 3.17 -26.73 -0.08 1.51 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 16 O -0.55 -8.19 12.74 -35.23 -0.45 -8.63 16 17 C -0.15 -1.77 5.26 -26.73 -0.14 -1.91 16 18 C 0.07 0.74 5.84 37.16 0.22 0.95 16 19 O -0.38 -4.60 10.33 -35.23 -0.36 -4.96 16 20 C 0.10 0.97 6.06 36.01 0.22 1.19 16 21 C -0.09 -0.85 5.51 -104.62 -0.58 -1.43 16 22 C -0.10 -0.88 9.70 -39.59 -0.38 -1.27 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 26 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 27 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.32 6.67 8.47 -39.29 -0.33 6.34 16 32 H 0.07 1.18 8.06 -51.93 -0.42 0.77 16 33 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 34 H 0.37 4.62 9.05 45.56 0.41 5.03 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 41 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -31.19 372.96 -9.69 -40.88 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.85 Total: 7.81 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.59 Total: -17.11 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.03 Total: -40.35 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.81 Total: -13.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.19 -9.69 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253293168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.493 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds