Wall clock time and date at job start Tue Mar 31 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47046 * 2 1 4 4 C 1.50705 * 109.46905 * 119.99714 * 2 1 3 5 5 H 1.07997 * 119.99777 * 119.99988 * 4 2 1 6 6 C 1.37880 * 120.00042 * 299.99829 * 4 2 1 7 7 N 1.31520 * 119.99652 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47184 * 89.99786 * 8 6 4 10 10 H 1.48497 * 109.47029 * 210.00443 * 8 6 4 11 11 H 1.48502 * 109.46993 * 330.00048 * 8 6 4 12 12 N 1.46900 * 109.47370 * 239.99471 * 2 1 3 13 13 C 1.46898 * 110.99589 * 84.99775 * 12 2 1 14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 C 1.53002 * 109.47338 * 185.00117 * 17 14 13 19 19 O 1.42896 * 109.47092 * 179.97438 * 18 17 14 20 20 C 1.42901 * 113.99951 * 179.97438 * 19 18 17 21 21 C 1.50706 * 109.47013 * 179.97438 * 20 19 18 22 22 C 1.38225 * 120.00073 * 269.72669 * 21 20 19 23 23 C 1.38234 * 120.00301 * 179.76684 * 22 21 20 24 24 C 1.38240 * 119.99507 * 0.50914 * 23 22 21 25 25 C 1.38234 * 119.99976 * 359.74505 * 24 23 22 26 26 C 1.38234 * 120.00143 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47337 * 300.00231 * 1 2 3 29 29 H 1.09004 * 109.47057 * 60.00289 * 1 2 3 30 30 H 0.96998 * 119.99577 * 180.02562 * 7 6 4 31 31 H 1.00904 * 110.99777 * 321.05042 * 12 2 1 32 32 H 1.08999 * 109.47049 * 60.00398 * 13 12 2 33 33 H 1.08997 * 109.47646 * 300.00448 * 13 12 2 34 34 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 35 35 H 1.09005 * 109.46682 * 304.99749 * 17 14 13 36 36 H 1.08999 * 109.47221 * 64.99915 * 17 14 13 37 37 H 1.09005 * 109.46490 * 299.99775 * 18 17 14 38 38 H 1.08999 * 109.47130 * 59.99742 * 18 17 14 39 39 H 1.09002 * 109.46914 * 299.99909 * 20 19 18 40 40 H 1.09000 * 109.47151 * 60.00262 * 20 19 18 41 41 H 1.08008 * 119.99989 * 359.97438 * 22 21 20 42 42 H 1.07998 * 120.00428 * 180.22880 * 23 22 21 43 43 H 1.07999 * 119.99851 * 179.72917 * 24 23 22 44 44 H 1.07998 * 119.99879 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99872 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4879 -2.5651 3.7124 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 6 2.5951 -0.5334 -3.5744 15 1 1.9184 -1.3568 -3.8028 16 8 3.9000 -1.0499 -3.3051 17 6 2.6611 0.4197 -4.7694 18 6 3.0537 -0.3623 -6.0245 19 8 3.1147 0.5278 -7.1407 20 6 3.4757 -0.1053 -8.3699 21 6 3.5086 0.9211 -9.4729 22 6 2.3697 1.1769 -10.2132 23 6 2.3985 2.1218 -11.2217 24 6 3.5693 2.8034 -11.4969 25 6 4.7097 2.5439 -10.7600 26 6 4.6793 1.6031 -9.7476 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7087 1.1615 3.4843 31 1 1.4496 -1.4980 -1.4099 32 1 2.7588 1.0460 -2.1182 33 1 1.0871 0.6162 -2.5525 34 1 4.5557 -0.3714 -3.0934 35 1 1.6854 0.8819 -4.9198 36 1 3.4039 1.1937 -4.5764 37 1 4.0294 -0.8245 -5.8741 38 1 2.3109 -1.1363 -6.2176 39 1 4.4605 -0.5615 -8.2681 40 1 2.7422 -0.8744 -8.6116 41 1 1.4563 0.6408 -10.0014 42 1 1.5077 2.3243 -11.7977 43 1 3.5930 3.5385 -12.2877 44 1 5.6244 3.0761 -10.9752 45 1 5.5704 1.4000 -9.1722 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253293168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:01 Heat of formation + Delta-G solvation = -103.314843 kcal Electronic energy + Delta-G solvation = -22260.487228 eV Core-core repulsion = 18855.539721 eV Total energy + Delta-G solvation = -3404.947507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31968 -39.43729 -38.37130 -37.06883 -34.39026 -33.54345 -32.30639 -31.80366 -30.64317 -27.68998 -27.21369 -26.47575 -23.61205 -23.49144 -22.53714 -22.21319 -21.89379 -18.49357 -17.94061 -17.53991 -17.42394 -17.10591 -16.72371 -16.55773 -16.22299 -15.71102 -15.48053 -15.32015 -14.93902 -14.56107 -14.32425 -14.26724 -13.69460 -13.63887 -13.54892 -13.33513 -13.21098 -12.85849 -12.68522 -12.39628 -12.35177 -12.23155 -12.13779 -11.96042 -11.88028 -11.87770 -11.65020 -11.16318 -10.72358 -10.57104 -10.48306 -9.83753 -9.77150 -8.90927 -8.09368 -6.20272 0.32581 0.48530 1.43568 1.43812 1.55119 2.43849 2.52498 3.03858 3.18718 3.48416 3.76239 3.87399 3.90075 3.97322 4.09852 4.14053 4.22334 4.27848 4.33160 4.39572 4.45841 4.48164 4.63767 4.66375 4.70755 4.73567 4.76624 4.85475 4.89325 5.06371 5.08272 5.10003 5.14320 5.26255 5.41410 5.53685 5.59829 5.65645 5.69757 5.81891 6.08265 6.22070 6.27856 6.65303 6.80268 6.93071 6.98919 7.49708 8.96063 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040186 B = 0.001989 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.590343 B =14075.902356 C =14285.942689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.031 3.969 14 C 0.128 3.872 15 H 0.098 0.902 16 O -0.563 6.563 17 C -0.139 4.139 18 C 0.070 3.930 19 O -0.403 6.403 20 C 0.100 3.900 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.115 4.115 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.330 0.670 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.382 0.618 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 1.310 -28.480 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.309 5.309 13 C -0.099 4.099 14 C 0.069 3.931 15 H 0.116 0.884 16 O -0.369 6.369 17 C -0.178 4.178 18 C -0.006 4.006 19 O -0.324 6.324 20 C 0.024 3.976 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.133 4.133 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.904 1.128 -28.278 28.722 hybrid contribution -0.596 0.272 1.029 1.220 sum 4.307 1.400 -27.250 27.624 Atomic orbital electron populations 1.22249 1.00043 0.99275 1.00097 1.18958 0.90017 0.92649 0.87828 0.98156 1.21456 1.30228 1.12389 0.91083 0.92847 1.25748 0.95535 0.95969 1.01970 1.70013 1.38074 1.24331 1.23957 0.85497 0.77911 0.79021 0.78804 1.20350 1.20882 1.19433 1.60580 1.57816 1.09223 1.03241 1.22642 0.99345 0.96018 0.91889 1.21685 0.85214 0.95676 0.90561 0.88416 1.86519 1.19635 1.38697 1.92029 1.22093 1.03513 0.98878 0.93279 1.22410 1.01017 0.92074 0.85095 1.87909 1.90803 1.36690 1.16960 1.21405 1.00563 0.93284 0.82326 1.19818 0.94781 0.99286 0.96997 1.21311 0.97770 0.98333 0.95847 1.21474 0.99243 0.96298 0.97923 1.21560 0.92810 0.99657 0.99950 1.21472 0.99633 0.98016 0.95822 1.21314 0.97967 0.96135 0.97857 0.94887 0.92003 0.95556 0.93036 0.85291 0.92204 0.95314 0.76920 0.90300 0.90730 0.92290 0.92537 0.91595 0.91502 0.85239 0.83988 0.83770 0.84011 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.61 8.94 71.98 0.64 -6.97 16 2 C 0.21 10.95 2.57 44.17 0.11 11.06 16 3 H 0.00 0.03 7.80 -2.39 -0.02 0.01 16 4 C -0.51 -28.97 8.84 25.60 0.23 -28.74 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.32 5.30 84.65 0.45 0.77 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.55 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 N -0.68 -28.65 6.10 -495.45 -3.02 -31.67 16 13 C 0.03 1.05 5.15 86.30 0.44 1.49 16 14 C 0.13 3.40 3.17 30.60 0.10 3.49 16 15 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 16 O -0.56 -16.04 12.74 -148.98 -1.90 -17.93 16 17 C -0.14 -3.12 5.26 30.60 0.16 -2.95 16 18 C 0.07 1.46 5.84 71.98 0.42 1.88 16 19 O -0.40 -9.23 10.33 -148.98 -1.54 -10.76 16 20 C 0.10 1.81 6.06 71.24 0.43 2.24 16 21 C -0.11 -2.03 5.51 -19.87 -0.11 -2.14 16 22 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 23 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 26 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 27 H 0.03 1.51 8.13 -2.39 -0.02 1.50 16 28 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 29 H 0.03 1.11 7.45 -2.38 -0.02 1.09 16 30 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.33 13.29 8.47 -89.69 -0.76 12.53 16 32 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 33 H 0.03 0.96 7.44 -2.39 -0.02 0.94 16 34 H 0.38 9.09 9.05 -74.06 -0.67 8.42 16 35 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.20 7.82 -2.38 -0.02 1.19 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 41 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -65.85 372.96 -0.67 -66.52 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.46 Total: 28.84 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 3.98 Total: -28.08 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.78 Total: -85.22 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -3.44 Total: -28.70 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -65.85 -0.67 -66.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253293168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.794 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds