Wall clock time and date at job start Tue Mar 31 2020 07:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00609 * 2 1 4 4 H 1.48499 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47064 * 300.00225 * 3 2 1 6 6 H 1.48499 * 109.46931 * 59.99849 * 3 2 1 7 7 C 1.37882 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47573 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47260 * 180.02562 * 11 10 9 13 13 C 1.35350 * 126.75465 * 124.99884 * 12 11 10 14 14 N 1.35314 * 106.17612 * 179.97438 * 13 12 11 15 15 C 1.46501 * 125.86615 * 179.97438 * 14 13 12 16 16 H 1.08996 * 108.87202 * 206.39946 * 15 14 13 17 17 C 1.45547 * 108.89774 * 325.00932 * 15 14 13 18 18 C 1.54231 * 112.40761 * 182.68937 * 17 15 14 19 19 C 1.50470 * 108.51737 * 279.99534 * 18 17 15 20 20 C 1.54071 * 112.41687 * 94.20623 * 19 18 17 21 21 C 1.53998 * 112.85406 * 318.13879 * 20 19 18 22 22 C 1.50478 * 112.55035 * 318.44019 * 21 20 19 23 23 H 1.08999 * 109.78445 * 334.26416 * 22 21 20 24 24 O 1.42898 * 109.62628 * 213.78388 * 22 21 20 25 25 N 1.28709 * 108.26484 * 0.26812 * 14 13 12 26 26 N 1.28637 * 110.17839 * 359.55610 * 25 14 13 27 27 H 0.97006 * 119.99755 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46993 * 60.00261 * 9 7 2 29 29 H 1.08995 * 109.47280 * 299.99718 * 9 7 2 30 30 H 1.08999 * 109.47035 * 59.99555 * 10 9 7 31 31 H 1.09002 * 109.47172 * 300.00363 * 10 9 7 32 32 H 1.09000 * 109.46678 * 59.99564 * 11 10 9 33 33 H 1.09004 * 109.46541 * 300.00227 * 11 10 9 34 34 H 1.08001 * 126.90630 * 359.95823 * 13 12 11 35 35 H 1.08994 * 108.89709 * 61.93074 * 17 15 14 36 36 H 1.09005 * 108.81128 * 303.38995 * 17 15 14 37 37 H 1.09009 * 109.62765 * 160.28862 * 18 17 15 38 38 H 1.08999 * 109.79695 * 39.80451 * 18 17 15 39 39 H 1.09002 * 108.88028 * 214.93706 * 19 18 17 40 40 H 1.08999 * 108.87808 * 333.48101 * 19 18 17 41 41 H 1.09001 * 108.81060 * 79.09981 * 20 19 18 42 42 H 1.09001 * 108.81017 * 197.37263 * 20 19 18 43 43 H 1.09003 * 108.91071 * 197.60796 * 21 20 19 44 44 H 1.08999 * 108.79171 * 79.19155 * 21 20 19 45 45 H 0.96699 * 114.00104 * 60.96434 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0005 11 6 1.4799 -4.9872 -0.0001 12 6 2.4591 -6.1327 0.0005 13 6 2.5119 -7.1525 0.8888 14 7 3.5424 -7.9385 0.4996 15 6 3.9823 -9.1681 1.1633 16 1 5.0413 -9.3215 0.9555 17 6 3.8005 -9.0195 2.5997 18 6 4.3019 -10.2479 3.3861 19 6 3.2501 -11.3217 3.3166 20 6 3.4998 -12.3151 2.1657 21 6 3.9509 -11.6235 0.8659 22 6 3.1853 -10.3577 0.5900 23 1 2.2067 -10.4070 1.0674 24 8 3.0237 -10.1923 -0.8202 25 7 4.0734 -7.4167 -0.5504 26 7 3.4469 -6.3418 -0.8771 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8716 -3.6045 0.8905 31 1 2.8716 -3.6045 -0.8894 32 1 0.8535 -5.0446 -0.8903 33 1 0.8529 -5.0451 0.8897 34 1 1.8624 -7.3076 1.7377 35 1 2.7404 -8.8755 2.8083 36 1 4.3484 -8.1385 2.9341 37 1 4.4747 -9.9713 4.4262 38 1 5.2292 -10.6146 2.9459 39 1 3.2419 -11.8689 4.2593 40 1 2.2766 -10.8530 3.1729 41 1 4.2689 -13.0235 2.4736 42 1 2.5786 -12.8635 1.9687 43 1 3.8081 -12.3109 0.0320 44 1 5.0113 -11.3840 0.9454 45 1 2.5303 -10.9066 -1.2460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254127734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:27 Heat of formation + Delta-G solvation = 21.854272 kcal Electronic energy + Delta-G solvation = -23575.473971 eV Core-core repulsion = 20208.246955 eV Total energy + Delta-G solvation = -3367.227016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.04056 -39.96925 -36.45160 -35.27357 -34.30849 -32.53957 -31.82645 -30.48658 -30.32622 -27.02855 -25.48071 -25.08638 -23.64427 -22.53602 -21.02117 -20.59108 -20.16628 -19.76665 -17.91569 -17.33613 -16.58400 -16.09776 -15.49406 -15.10699 -15.00261 -14.59966 -14.40875 -14.24602 -13.90013 -13.85258 -13.52485 -13.32385 -12.85505 -12.25109 -12.11496 -11.99761 -11.72207 -11.51056 -11.39479 -11.33607 -11.19735 -11.14279 -11.09813 -10.79021 -10.61080 -10.40283 -10.34500 -10.27161 -9.74047 -9.48902 -9.24573 -8.99206 -8.58813 -8.24179 -5.89784 -3.90597 1.89918 2.36479 2.99287 3.38471 3.44567 3.45524 3.51313 3.98602 4.09656 4.28047 4.34581 4.37822 4.50161 4.55692 4.57190 4.62539 4.71745 4.94935 5.09108 5.10950 5.19752 5.25388 5.35191 5.42447 5.45541 5.46364 5.49542 5.53219 5.57288 5.66743 5.77943 5.85286 6.13346 6.26848 6.37407 6.69133 6.82698 6.94040 7.08927 7.21116 7.31959 7.81598 7.97604 8.12351 8.56658 8.92478 9.16968 9.72734 11.21805 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033237 B = 0.002611 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.228888 B =10722.198604 C =10990.695518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.037 4.037 12 C 0.003 3.997 13 C -0.070 4.070 14 N -0.283 5.283 15 C 0.166 3.834 16 H 0.109 0.891 17 C -0.142 4.142 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.151 4.151 22 C 0.101 3.899 23 H 0.067 0.933 24 O -0.551 6.551 25 N -0.076 5.076 26 N -0.267 5.267 27 H 0.258 0.742 28 H 0.017 0.983 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -30.066 8.304 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.076 4.076 12 C -0.135 4.135 13 C -0.219 4.219 14 N -0.077 5.077 15 C 0.063 3.937 16 H 0.127 0.873 17 C -0.181 4.181 18 C -0.148 4.148 19 C -0.165 4.165 20 C -0.155 4.155 21 C -0.189 4.189 22 C 0.041 3.959 23 H 0.085 0.915 24 O -0.356 6.356 25 N -0.054 5.054 26 N -0.134 5.134 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.962 -29.546 7.343 31.231 hybrid contribution -0.718 0.329 0.828 1.144 sum 6.244 -29.217 8.171 30.974 Atomic orbital electron populations 1.69979 1.06009 1.26287 1.51505 1.25022 0.94839 0.99176 0.95558 0.86562 0.80221 0.83935 0.77465 1.19752 1.21056 1.21126 1.21336 0.93139 0.91137 1.49686 0.92678 1.19126 0.94030 0.91400 0.97137 1.21564 0.98950 0.92612 1.00855 1.20104 0.94377 0.90694 1.02401 1.22321 0.99071 0.98449 0.93651 1.23182 0.97754 0.95560 1.05403 1.47229 1.21807 1.18614 1.20070 1.20512 1.01008 0.79833 0.92316 0.87296 1.20941 1.04014 1.00940 0.92155 1.21254 0.99178 0.93784 1.00588 1.21450 0.99343 0.97029 0.98668 1.21889 1.01791 0.97996 0.93816 1.22080 1.01520 0.96711 0.98637 1.21790 0.98078 0.92923 0.83116 0.91544 1.86679 1.78936 1.50833 1.19181 1.78267 1.20707 1.05640 1.00817 1.75085 1.06939 1.08264 1.23103 0.93205 0.96489 0.96674 0.93735 0.92540 0.90635 0.90921 0.80216 0.90136 0.89694 0.90365 0.90866 0.91407 0.91682 0.91499 0.91858 0.90535 0.90886 0.77179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.51 -15.30 9.11 -34.44 -0.31 -15.62 16 8 H 0.05 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.30 5.13 -26.73 -0.14 -2.44 16 11 C -0.04 -0.68 5.79 -27.89 -0.16 -0.84 16 12 C 0.00 0.05 6.50 -82.78 -0.54 -0.49 16 13 C -0.07 -0.99 10.54 -17.05 -0.18 -1.17 16 14 N -0.28 -3.91 2.68 -57.58 -0.15 -4.06 16 15 C 0.17 1.50 2.46 -70.79 -0.17 1.32 16 16 H 0.11 0.99 7.47 -51.93 -0.39 0.60 16 17 C -0.14 -0.93 4.09 -29.60 -0.12 -1.05 16 18 C -0.11 -0.47 5.60 -27.35 -0.15 -0.63 16 19 C -0.13 -0.48 5.32 -27.44 -0.15 -0.63 16 20 C -0.12 -0.43 5.85 -25.65 -0.15 -0.58 16 21 C -0.15 -0.74 5.06 -27.47 -0.14 -0.88 16 22 C 0.10 0.75 2.94 -27.34 -0.08 0.67 16 23 H 0.07 0.45 7.00 -51.93 -0.36 0.08 16 24 O -0.55 -5.53 12.52 -35.23 -0.44 -5.97 16 25 N -0.08 -1.36 12.98 60.35 0.78 -0.58 16 26 N -0.27 -5.38 12.40 33.29 0.41 -4.97 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 34 H 0.18 1.86 7.27 -52.49 -0.38 1.48 16 35 H 0.08 0.49 6.40 -51.93 -0.33 0.15 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.07 0.30 6.99 -51.93 -0.36 -0.07 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.06 0.27 6.63 -51.93 -0.34 -0.08 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.33 7.86 -51.93 -0.41 -0.07 16 44 H 0.07 0.38 6.64 -51.93 -0.34 0.04 16 45 H 0.38 2.14 8.96 45.56 0.41 2.55 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -36.54 354.37 -7.58 -44.12 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.71 Total: -3.92 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.53 Total: -20.40 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.78 Total: -36.65 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.44 Total: -5.97 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.54 -7.58 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254127734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.978 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds