Wall clock time and date at job start Tue Mar 31 2020 07:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00609 * 2 1 4 4 H 1.48499 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47064 * 300.00225 * 3 2 1 6 6 H 1.48499 * 109.46931 * 59.99849 * 3 2 1 7 7 C 1.37882 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99968 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47328 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47573 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47260 * 180.02562 * 11 10 9 13 13 C 1.35350 * 126.75465 * 124.99884 * 12 11 10 14 14 N 1.35314 * 106.17612 * 179.97438 * 13 12 11 15 15 C 1.46501 * 125.86615 * 179.97438 * 14 13 12 16 16 H 1.08996 * 108.87202 * 206.39946 * 15 14 13 17 17 C 1.45547 * 108.89774 * 325.00932 * 15 14 13 18 18 C 1.54231 * 112.40761 * 182.68937 * 17 15 14 19 19 C 1.50470 * 108.51737 * 279.99534 * 18 17 15 20 20 C 1.54071 * 112.41687 * 94.20623 * 19 18 17 21 21 C 1.53998 * 112.85406 * 318.13879 * 20 19 18 22 22 C 1.50478 * 112.55035 * 318.44019 * 21 20 19 23 23 H 1.08999 * 109.78445 * 334.26416 * 22 21 20 24 24 O 1.42898 * 109.62628 * 213.78388 * 22 21 20 25 25 N 1.28709 * 108.26484 * 0.26812 * 14 13 12 26 26 N 1.28637 * 110.17839 * 359.55610 * 25 14 13 27 27 H 0.97006 * 119.99755 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46993 * 60.00261 * 9 7 2 29 29 H 1.08995 * 109.47280 * 299.99718 * 9 7 2 30 30 H 1.08999 * 109.47035 * 59.99555 * 10 9 7 31 31 H 1.09002 * 109.47172 * 300.00363 * 10 9 7 32 32 H 1.09000 * 109.46678 * 59.99564 * 11 10 9 33 33 H 1.09004 * 109.46541 * 300.00227 * 11 10 9 34 34 H 1.08001 * 126.90630 * 359.95823 * 13 12 11 35 35 H 1.08994 * 108.89709 * 61.93074 * 17 15 14 36 36 H 1.09005 * 108.81128 * 303.38995 * 17 15 14 37 37 H 1.09009 * 109.62765 * 160.28862 * 18 17 15 38 38 H 1.08999 * 109.79695 * 39.80451 * 18 17 15 39 39 H 1.09002 * 108.88028 * 214.93706 * 19 18 17 40 40 H 1.08999 * 108.87808 * 333.48101 * 19 18 17 41 41 H 1.09001 * 108.81060 * 79.09981 * 20 19 18 42 42 H 1.09001 * 108.81017 * 197.37263 * 20 19 18 43 43 H 1.09003 * 108.91071 * 197.60796 * 21 20 19 44 44 H 1.08999 * 108.79171 * 79.19155 * 21 20 19 45 45 H 0.96699 * 114.00104 * 60.96434 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0005 11 6 1.4799 -4.9872 -0.0001 12 6 2.4591 -6.1327 0.0005 13 6 2.5119 -7.1525 0.8888 14 7 3.5424 -7.9385 0.4996 15 6 3.9823 -9.1681 1.1633 16 1 5.0413 -9.3215 0.9555 17 6 3.8005 -9.0195 2.5997 18 6 4.3019 -10.2479 3.3861 19 6 3.2501 -11.3217 3.3166 20 6 3.4998 -12.3151 2.1657 21 6 3.9509 -11.6235 0.8659 22 6 3.1853 -10.3577 0.5900 23 1 2.2067 -10.4070 1.0674 24 8 3.0237 -10.1923 -0.8202 25 7 4.0734 -7.4167 -0.5504 26 7 3.4469 -6.3418 -0.8771 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8716 -3.6045 0.8905 31 1 2.8716 -3.6045 -0.8894 32 1 0.8535 -5.0446 -0.8903 33 1 0.8529 -5.0451 0.8897 34 1 1.8624 -7.3076 1.7377 35 1 2.7404 -8.8755 2.8083 36 1 4.3484 -8.1385 2.9341 37 1 4.4747 -9.9713 4.4262 38 1 5.2292 -10.6146 2.9459 39 1 3.2419 -11.8689 4.2593 40 1 2.2766 -10.8530 3.1729 41 1 4.2689 -13.0235 2.4736 42 1 2.5786 -12.8635 1.9687 43 1 3.8081 -12.3109 0.0320 44 1 5.0113 -11.3840 0.9454 45 1 2.5303 -10.9066 -1.2460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254127734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:27 Heat of formation + Delta-G solvation = -3.391774 kcal Electronic energy + Delta-G solvation = -23576.568722 eV Core-core repulsion = 20208.246955 eV Total energy + Delta-G solvation = -3368.321766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.23729 -40.56437 -37.06671 -36.75459 -35.53257 -34.41853 -32.49089 -31.93960 -31.25628 -28.83808 -26.12282 -25.73976 -25.39195 -23.44869 -22.61533 -21.56339 -21.28158 -20.53277 -18.73532 -18.42728 -18.06179 -17.45400 -16.54620 -16.25100 -16.07946 -15.62562 -15.43555 -15.22117 -15.01026 -14.63223 -14.37812 -14.26179 -14.02538 -13.75294 -13.43613 -13.23776 -12.79639 -12.68659 -12.60708 -12.44790 -12.35230 -12.24568 -12.04228 -11.82949 -11.70674 -11.48438 -11.45180 -11.39798 -11.31280 -11.10836 -10.84842 -10.80096 -10.52889 -9.96393 -8.18257 -6.28344 0.74400 1.39319 1.40411 1.42881 1.53967 1.62846 2.42639 2.87412 3.14270 3.32502 3.55422 3.61304 3.84408 3.92700 3.96135 3.98443 4.08963 4.11087 4.22856 4.23940 4.43878 4.45397 4.56515 4.59846 4.67427 4.74428 4.87042 4.92041 4.98923 5.02821 5.10847 5.15816 5.20981 5.21270 5.26950 5.31587 5.36432 5.37984 5.49971 5.56366 5.77270 5.81579 5.89913 6.30230 6.74768 6.87544 7.39965 7.64538 8.93703 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.033237 B = 0.002611 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.228888 B =10722.198604 C =10990.695518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.085 4.085 11 C -0.025 4.025 12 C -0.028 4.028 13 C -0.043 4.043 14 N -0.268 5.268 15 C 0.156 3.844 16 H 0.104 0.896 17 C -0.140 4.140 18 C -0.103 4.103 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.145 4.145 22 C 0.105 3.895 23 H 0.079 0.921 24 O -0.584 6.584 25 N -0.105 5.105 26 N -0.314 5.314 27 H 0.264 0.736 28 H -0.007 1.007 29 H 0.003 0.997 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -31.538 10.214 33.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.123 4.123 11 C -0.064 4.064 12 C -0.167 4.167 13 C -0.194 4.194 14 N -0.062 5.062 15 C 0.055 3.945 16 H 0.122 0.878 17 C -0.178 4.178 18 C -0.142 4.142 19 C -0.165 4.165 20 C -0.151 4.151 21 C -0.184 4.184 22 C 0.045 3.955 23 H 0.097 0.903 24 O -0.393 6.393 25 N -0.083 5.083 26 N -0.180 5.180 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.241 0.759 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.120 -31.063 9.244 33.182 hybrid contribution -0.766 0.691 0.261 1.064 sum 6.355 -30.372 9.506 32.453 Atomic orbital electron populations 1.70088 1.07569 1.27681 1.51777 1.25938 0.95838 1.03147 0.94757 0.85427 0.78853 0.78925 0.78020 1.19201 1.20231 1.19823 1.21721 0.93279 0.92785 1.50436 0.93067 1.19015 0.94273 0.92533 0.95289 1.21292 0.97862 0.93471 0.99721 1.19889 0.94258 0.88889 1.03343 1.22272 0.99518 0.99766 0.95152 1.23680 0.97155 0.93704 1.04880 1.47658 1.20761 1.19127 1.18684 1.21071 1.01204 0.78560 0.93634 0.87764 1.20978 1.04702 1.01748 0.90391 1.21243 0.99406 0.92868 1.00647 1.21461 0.99011 0.96879 0.99159 1.21873 1.02332 0.97952 0.92931 1.22013 1.00866 0.95680 0.99794 1.21882 0.98700 0.92889 0.82023 0.90295 1.86634 1.79549 1.52347 1.20740 1.78166 1.21596 1.05790 1.02755 1.75012 1.08372 1.09722 1.24937 0.92690 0.98843 0.97817 0.93825 0.94586 0.91320 0.88393 0.75941 0.89037 0.90717 0.89359 0.90677 0.90395 0.91616 0.90767 0.91207 0.89862 0.91296 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -33.00 9.11 25.60 0.23 -32.77 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.45 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.96 5.13 30.59 0.16 -3.81 16 11 C -0.02 -0.92 5.79 29.85 0.17 -0.75 16 12 C -0.03 -1.02 6.50 41.59 0.27 -0.75 16 13 C -0.04 -1.15 10.54 83.49 0.88 -0.27 16 14 N -0.27 -7.15 2.68 -336.10 -0.90 -8.05 16 15 C 0.16 2.57 2.46 43.14 0.11 2.68 16 16 H 0.10 1.82 7.47 -2.39 -0.02 1.80 16 17 C -0.14 -1.48 4.09 28.73 0.12 -1.37 16 18 C -0.10 -0.60 5.60 30.19 0.17 -0.43 16 19 C -0.13 -0.54 5.32 30.14 0.16 -0.38 16 20 C -0.11 -0.49 5.85 31.29 0.18 -0.31 16 21 C -0.15 -1.11 5.06 30.12 0.15 -0.96 16 22 C 0.10 1.34 2.94 30.20 0.09 1.43 16 23 H 0.08 0.82 7.00 -2.39 -0.02 0.81 16 24 O -0.58 -11.16 12.52 -148.98 -1.87 -13.02 16 25 N -0.10 -3.82 12.98 37.02 0.48 -3.34 16 26 N -0.31 -13.00 12.40 -48.60 -0.60 -13.60 16 27 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.10 3.11 8.12 -2.39 -0.02 3.09 16 34 H 0.22 3.73 7.27 -2.91 -0.02 3.71 16 35 H 0.09 0.78 6.40 -2.39 -0.02 0.77 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.07 0.43 6.99 -2.39 -0.02 0.41 16 39 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.07 0.30 6.63 -2.39 -0.02 0.28 16 41 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.08 0.55 7.86 -2.39 -0.02 0.53 16 44 H 0.07 0.60 6.64 -2.39 -0.02 0.58 16 45 H 0.40 4.07 8.96 -74.06 -0.66 3.41 16 Total: -1.00 -80.85 354.37 3.04 -77.81 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.31 Total: 5.26 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.30 Total: -35.57 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -0.74 Total: -82.78 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.87 Total: -13.02 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -80.85 3.04 -77.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254127734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.419 kcal (2) G-P(sol) polarization free energy of solvation -80.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds