Wall clock time and date at job start Tue Mar 31 2020 07:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46499 * 125.86879 * 180.18776 * 14 13 12 16 16 H 1.09010 * 108.78211 * 155.29655 * 15 14 13 17 17 C 1.54066 * 108.81499 * 36.89250 * 15 14 13 18 18 C 1.50401 * 112.53386 * 197.31074 * 17 15 14 19 19 C 1.54242 * 108.42703 * 94.28224 * 18 17 15 20 20 C 1.45535 * 112.40902 * 280.03460 * 19 18 17 21 21 C 1.54239 * 112.41025 * 61.93064 * 20 19 18 22 22 C 1.50467 * 108.52159 * 280.01759 * 21 20 19 23 23 H 1.09002 * 108.79660 * 333.42630 * 22 21 20 24 24 O 1.42903 * 108.87934 * 214.92832 * 22 21 20 25 25 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 26 26 N 1.28632 * 110.18138 * 359.73745 * 25 14 13 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 35 35 H 1.09002 * 108.87441 * 318.19363 * 17 15 14 36 36 H 1.08997 * 108.88015 * 76.64244 * 17 15 14 37 37 H 1.08997 * 109.66131 * 334.61006 * 18 17 15 38 38 H 1.09003 * 109.84836 * 214.06810 * 18 17 15 39 39 H 1.08998 * 108.89697 * 159.27208 * 19 18 17 40 40 H 1.09005 * 108.81543 * 40.73117 * 19 18 17 41 41 H 1.09005 * 108.89238 * 301.17730 * 20 19 18 42 42 H 1.09002 * 108.89496 * 182.68944 * 20 19 18 43 43 H 1.09006 * 109.62808 * 160.30184 * 21 20 19 44 44 H 1.09008 * 109.78899 * 39.82357 * 21 20 19 45 45 H 0.96697 * 113.99786 * 57.02594 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 6 2.5160 -7.1493 0.8909 14 7 3.5433 -7.9380 0.4988 15 6 3.9825 -9.1683 1.1618 16 1 4.4930 -9.7972 0.4323 17 6 2.7437 -9.9201 1.6853 18 6 3.0919 -10.9541 2.7205 19 6 2.9376 -10.3174 4.1168 20 6 4.0831 -9.4974 4.4823 21 6 4.2833 -8.3060 3.5235 22 6 4.9743 -8.8020 2.2824 23 1 5.5613 -9.6847 2.5362 24 8 5.8554 -7.7832 1.8051 25 7 4.0714 -7.4188 -0.5539 26 7 3.4482 -6.3410 -0.8775 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.8535 -5.0450 0.8885 33 1 0.8542 -5.0446 -0.8914 34 1 1.8692 -7.3023 1.7422 35 1 2.0530 -9.1995 2.1233 36 1 2.2510 -10.4141 0.8480 37 1 4.1217 -11.2821 2.5794 38 1 2.4202 -11.8080 2.6312 39 1 2.8210 -11.1103 4.8555 40 1 2.0423 -9.6956 4.1227 41 1 4.9798 -10.1171 4.4673 42 1 3.9365 -9.1165 5.4930 43 1 4.8984 -7.5466 4.0065 44 1 3.3159 -7.8792 3.2583 45 1 6.5127 -7.4962 2.4537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254127736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:29 Heat of formation + Delta-G solvation = 21.613930 kcal Electronic energy + Delta-G solvation = -23900.673253 eV Core-core repulsion = 20533.435815 eV Total energy + Delta-G solvation = -3367.237438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.02005 -39.89282 -36.49512 -35.23336 -34.21810 -32.51770 -31.88912 -30.36240 -30.34831 -27.10732 -25.67941 -24.85556 -23.60090 -22.22623 -21.51659 -20.59550 -20.08391 -19.47595 -18.04557 -17.00067 -16.62730 -16.07352 -15.66923 -15.47459 -14.69837 -14.43716 -14.37690 -14.13257 -13.87074 -13.76447 -13.66303 -13.17622 -12.78242 -12.58166 -12.22653 -11.82947 -11.76893 -11.56325 -11.31540 -11.20650 -11.12987 -11.10981 -10.90221 -10.78171 -10.61536 -10.40398 -10.32384 -10.26723 -9.72511 -9.49114 -9.24470 -8.99123 -8.58532 -8.24195 -5.89774 -3.90602 1.89974 2.41023 2.98901 3.38368 3.44863 3.45447 3.51327 3.90098 4.12852 4.28481 4.37801 4.46708 4.53541 4.55840 4.61473 4.71211 4.72592 4.92483 5.13038 5.18360 5.20639 5.27338 5.36653 5.45971 5.46669 5.48367 5.55174 5.61674 5.67047 5.76682 5.82435 5.85308 6.12863 6.26385 6.37305 6.68754 6.83712 6.94150 7.09268 7.27323 7.32133 7.81613 7.97524 8.12328 8.56763 8.92487 9.16971 9.72766 11.21804 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.002960 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.654451 B = 9457.758709 C = 9573.235753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.101 4.101 11 C -0.036 4.036 12 C 0.002 3.998 13 C -0.068 4.068 14 N -0.278 5.278 15 C 0.157 3.843 16 H 0.110 0.890 17 C -0.129 4.129 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.157 4.157 22 C 0.100 3.900 23 H 0.071 0.929 24 O -0.555 6.555 25 N -0.076 5.076 26 N -0.267 5.267 27 H 0.258 0.742 28 H 0.017 0.983 29 H 0.015 0.985 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.179 0.821 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 -27.081 10.990 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.076 4.076 12 C -0.135 4.135 13 C -0.218 4.218 14 N -0.072 5.072 15 C 0.055 3.945 16 H 0.128 0.872 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.194 4.194 22 C 0.040 3.960 23 H 0.089 0.911 24 O -0.360 6.360 25 N -0.055 5.055 26 N -0.134 5.134 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.196 0.804 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.392 -27.185 9.369 29.689 hybrid contribution -0.009 1.007 1.520 1.824 sum 7.384 -26.178 10.889 29.298 Atomic orbital electron populations 1.69974 1.06002 1.26290 1.51526 1.25017 0.94834 0.99163 0.95557 0.86568 0.80240 0.83943 0.77461 1.19737 1.21055 1.21135 1.21336 0.93149 0.91138 1.49663 0.92676 1.19125 0.94020 0.91409 0.97116 1.21560 0.98928 0.92577 1.00880 1.20102 0.94379 0.90734 1.02358 1.22314 0.98992 0.98384 0.93845 1.23109 0.97720 0.95847 1.05088 1.47070 1.21352 1.19025 1.19766 1.22135 0.95435 0.82612 0.94368 0.87174 1.21748 0.95707 0.98782 1.00494 1.21315 1.02700 0.97502 0.93865 1.20565 0.99187 0.99550 0.96817 1.20462 0.99174 0.96466 0.99470 1.22233 1.03020 0.98541 0.95653 1.21935 0.90648 0.91558 0.91909 0.91096 1.86670 1.48148 1.57298 1.43923 1.78274 1.19783 1.06198 1.01218 1.75081 1.06460 1.08221 1.23602 0.93208 0.96484 0.96705 0.92548 0.93738 0.90968 0.90642 0.80350 0.89964 0.90139 0.91106 0.90480 0.91591 0.91603 0.91889 0.91463 0.90385 0.90537 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.51 -15.31 9.11 -34.44 -0.31 -15.62 16 8 H 0.05 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.30 5.13 -26.73 -0.14 -2.44 16 11 C -0.04 -0.68 5.79 -27.89 -0.16 -0.84 16 12 C 0.00 0.04 6.50 -82.78 -0.54 -0.50 16 13 C -0.07 -0.96 9.50 -17.05 -0.16 -1.12 16 14 N -0.28 -3.78 2.69 -53.68 -0.14 -3.93 16 15 C 0.16 1.41 2.97 -66.82 -0.20 1.21 16 16 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 17 C -0.13 -0.79 4.64 -27.47 -0.13 -0.91 16 18 C -0.12 -0.47 5.61 -27.38 -0.15 -0.62 16 19 C -0.12 -0.52 5.27 -29.60 -0.16 -0.68 16 20 C -0.12 -0.55 5.26 -29.60 -0.16 -0.71 16 21 C -0.16 -1.07 5.30 -27.35 -0.14 -1.21 16 22 C 0.10 0.77 2.74 -27.44 -0.08 0.70 16 23 H 0.07 0.40 6.62 -51.93 -0.34 0.05 16 24 O -0.55 -6.01 12.51 -35.23 -0.44 -6.45 16 25 N -0.08 -1.36 12.99 60.35 0.78 -0.58 16 26 N -0.27 -5.35 12.40 33.29 0.41 -4.93 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.18 1.85 6.47 -52.49 -0.34 1.51 16 35 H 0.08 0.53 4.74 -51.93 -0.25 0.28 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.25 6.97 -51.93 -0.36 -0.11 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.31 7.46 -51.93 -0.39 -0.08 16 41 H 0.06 0.25 7.47 -51.93 -0.39 -0.14 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.54 7.79 -51.93 -0.40 0.14 16 44 H 0.08 0.62 5.39 -51.92 -0.28 0.34 16 45 H 0.38 2.57 8.84 45.56 0.40 2.98 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -36.45 350.34 -7.49 -43.94 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.54 Total: -2.99 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.56 Total: -20.80 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 1.79 Total: -36.44 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.44 Total: -6.45 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.45 -7.49 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254127736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.552 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds