Wall clock time and date at job start Tue Mar 31 2020 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46499 * 125.86879 * 180.18776 * 14 13 12 16 16 H 1.09010 * 108.78211 * 155.29655 * 15 14 13 17 17 C 1.54066 * 108.81499 * 36.89250 * 15 14 13 18 18 C 1.50401 * 112.53386 * 197.31074 * 17 15 14 19 19 C 1.54242 * 108.42703 * 94.28224 * 18 17 15 20 20 C 1.45535 * 112.40902 * 280.03460 * 19 18 17 21 21 C 1.54239 * 112.41025 * 61.93064 * 20 19 18 22 22 C 1.50467 * 108.52159 * 280.01759 * 21 20 19 23 23 H 1.09002 * 108.79660 * 333.42630 * 22 21 20 24 24 O 1.42903 * 108.87934 * 214.92832 * 22 21 20 25 25 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 26 26 N 1.28632 * 110.18138 * 359.73745 * 25 14 13 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 35 35 H 1.09002 * 108.87441 * 318.19363 * 17 15 14 36 36 H 1.08997 * 108.88015 * 76.64244 * 17 15 14 37 37 H 1.08997 * 109.66131 * 334.61006 * 18 17 15 38 38 H 1.09003 * 109.84836 * 214.06810 * 18 17 15 39 39 H 1.08998 * 108.89697 * 159.27208 * 19 18 17 40 40 H 1.09005 * 108.81543 * 40.73117 * 19 18 17 41 41 H 1.09005 * 108.89238 * 301.17730 * 20 19 18 42 42 H 1.09002 * 108.89496 * 182.68944 * 20 19 18 43 43 H 1.09006 * 109.62808 * 160.30184 * 21 20 19 44 44 H 1.09008 * 109.78899 * 39.82357 * 21 20 19 45 45 H 0.96697 * 113.99786 * 57.02594 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 6 2.5160 -7.1493 0.8909 14 7 3.5433 -7.9380 0.4988 15 6 3.9825 -9.1683 1.1618 16 1 4.4930 -9.7972 0.4323 17 6 2.7437 -9.9201 1.6853 18 6 3.0919 -10.9541 2.7205 19 6 2.9376 -10.3174 4.1168 20 6 4.0831 -9.4974 4.4823 21 6 4.2833 -8.3060 3.5235 22 6 4.9743 -8.8020 2.2824 23 1 5.5613 -9.6847 2.5362 24 8 5.8554 -7.7832 1.8051 25 7 4.0714 -7.4188 -0.5539 26 7 3.4482 -6.3410 -0.8775 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.8535 -5.0450 0.8885 33 1 0.8542 -5.0446 -0.8914 34 1 1.8692 -7.3023 1.7422 35 1 2.0530 -9.1995 2.1233 36 1 2.2510 -10.4141 0.8480 37 1 4.1217 -11.2821 2.5794 38 1 2.4202 -11.8080 2.6312 39 1 2.8210 -11.1103 4.8555 40 1 2.0423 -9.6956 4.1227 41 1 4.9798 -10.1171 4.4673 42 1 3.9365 -9.1165 5.4930 43 1 4.8984 -7.5466 4.0065 44 1 3.3159 -7.8792 3.2583 45 1 6.5127 -7.4962 2.4537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254127736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:28 Heat of formation + Delta-G solvation = -3.685547 kcal Electronic energy + Delta-G solvation = -23901.770320 eV Core-core repulsion = 20533.435815 eV Total energy + Delta-G solvation = -3368.334505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.21472 -40.48801 -37.09986 -36.78197 -35.48668 -34.38943 -32.53430 -31.99977 -31.12590 -28.88035 -26.44708 -25.66547 -25.22132 -23.24874 -22.66137 -21.86501 -21.09696 -20.45456 -18.80213 -18.45140 -17.76694 -17.40617 -16.59125 -16.50567 -16.14635 -15.80678 -15.45258 -14.98501 -14.90800 -14.53281 -14.30052 -14.28007 -13.96261 -13.75289 -13.41299 -13.30822 -13.07353 -12.78569 -12.66576 -12.41745 -12.34517 -12.23888 -11.99587 -11.79002 -11.58544 -11.46534 -11.38941 -11.31868 -11.28936 -11.10816 -10.92909 -10.76543 -10.53144 -9.95407 -8.18443 -6.28629 0.74702 1.39036 1.40172 1.47214 1.53762 1.62828 2.42442 2.86356 3.13987 3.29126 3.51330 3.62714 3.82610 3.89251 3.93586 3.99679 4.08292 4.13861 4.18855 4.32868 4.43194 4.44758 4.54961 4.67215 4.70360 4.73656 4.90109 4.92296 4.97469 5.06339 5.15110 5.18747 5.21084 5.25219 5.26807 5.31677 5.35717 5.42663 5.50719 5.55893 5.79225 5.81344 5.89394 6.30001 6.73733 6.87062 7.39710 7.65102 8.93472 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.002960 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.654451 B = 9457.758709 C = 9573.235753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.085 4.085 11 C -0.025 4.025 12 C -0.029 4.029 13 C -0.041 4.041 14 N -0.261 5.261 15 C 0.144 3.856 16 H 0.111 0.889 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.124 4.124 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.100 3.900 23 H 0.099 0.901 24 O -0.589 6.589 25 N -0.104 5.104 26 N -0.314 5.314 27 H 0.264 0.736 28 H -0.006 1.006 29 H 0.003 0.997 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.219 0.781 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -28.605 12.926 32.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.123 4.123 11 C -0.064 4.064 12 C -0.167 4.167 13 C -0.192 4.192 14 N -0.055 5.055 15 C 0.043 3.957 16 H 0.129 0.871 17 C -0.160 4.160 18 C -0.149 4.149 19 C -0.162 4.162 20 C -0.149 4.149 21 C -0.193 4.193 22 C 0.041 3.959 23 H 0.117 0.883 24 O -0.398 6.398 25 N -0.083 5.083 26 N -0.180 5.180 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.021 0.979 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.765 -28.742 11.309 31.848 hybrid contribution -0.107 1.393 0.968 1.700 sum 7.658 -27.349 12.276 30.941 Atomic orbital electron populations 1.70082 1.07548 1.27695 1.51743 1.25928 0.95834 1.03114 0.94727 0.85434 0.78855 0.78933 0.78037 1.19222 1.20195 1.19812 1.21716 0.93255 0.92811 1.50498 0.93140 1.19010 0.94240 0.92495 0.95302 1.21284 0.97842 0.93569 0.99596 1.19888 0.94275 0.88872 1.03369 1.22252 0.99409 0.99699 0.95367 1.23538 0.97144 0.94075 1.04462 1.47452 1.20156 1.19502 1.18408 1.22749 0.97224 0.81017 0.94748 0.87074 1.21779 0.94100 0.98976 1.01160 1.21322 1.03617 0.97067 0.92863 1.20574 0.98699 0.99748 0.97158 1.20426 1.00012 0.95712 0.98793 1.22204 1.02001 0.99403 0.95646 1.22112 0.90322 0.92012 0.91454 0.88326 1.86627 1.49186 1.58375 1.45615 1.78169 1.20627 1.06312 1.03159 1.75008 1.07860 1.09699 1.25434 0.92676 0.98734 0.97866 0.94609 0.94105 0.88545 0.91084 0.76474 0.89950 0.89936 0.90217 0.89132 0.90413 0.92040 0.90676 0.91314 0.90817 0.91817 0.75439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 46.31 29.54 68.60 2.03 48.34 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -33.13 9.11 25.60 0.23 -32.90 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.08 -3.97 5.13 30.60 0.16 -3.81 16 11 C -0.02 -0.93 5.79 29.85 0.17 -0.76 16 12 C -0.03 -1.02 6.50 41.59 0.27 -0.75 16 13 C -0.04 -1.10 9.50 83.49 0.79 -0.30 16 14 N -0.26 -6.86 2.69 -323.74 -0.87 -7.73 16 15 C 0.14 2.31 2.97 45.71 0.14 2.44 16 16 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 17 C -0.12 -1.15 4.64 30.11 0.14 -1.01 16 18 C -0.11 -0.51 5.61 30.17 0.17 -0.34 16 19 C -0.12 -0.62 5.27 28.74 0.15 -0.47 16 20 C -0.11 -0.70 5.26 28.73 0.15 -0.55 16 21 C -0.15 -1.76 5.30 30.19 0.16 -1.60 16 22 C 0.10 1.35 2.74 30.13 0.08 1.43 16 23 H 0.10 0.80 6.62 -2.39 -0.02 0.78 16 24 O -0.59 -12.29 12.51 -148.98 -1.86 -14.15 16 25 N -0.10 -3.77 12.99 37.02 0.48 -3.29 16 26 N -0.31 -12.92 12.40 -48.60 -0.60 -13.53 16 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 3.09 8.12 -2.39 -0.02 3.07 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.22 3.85 6.47 -2.91 -0.02 3.83 16 35 H 0.08 0.80 4.74 -2.39 -0.01 0.79 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.26 6.97 -2.39 -0.02 0.24 16 38 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.06 0.39 7.46 -2.38 -0.02 0.37 16 41 H 0.07 0.31 7.47 -2.38 -0.02 0.29 16 42 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.07 0.91 7.79 -2.38 -0.02 0.89 16 44 H 0.06 0.89 5.39 -2.38 -0.01 0.88 16 45 H 0.40 5.07 8.84 -74.06 -0.65 4.41 16 Total: -1.00 -80.77 350.34 3.01 -77.76 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.33 Total: 6.76 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.23 Total: -36.43 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -0.71 Total: -82.28 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.86 Total: -14.15 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -80.77 3.01 -77.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254127736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.072 kcal (2) G-P(sol) polarization free energy of solvation -80.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds