Wall clock time and date at job start Tue Mar 31 2020 07:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99698 * 2 1 4 4 H 1.48504 * 109.46597 * 240.00001 * 3 2 1 5 5 H 1.48492 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47285 * 119.99794 * 3 2 1 7 7 C 1.37879 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46962 * 179.97438 * 11 10 9 13 13 C 1.35347 * 126.74699 * 125.00243 * 12 11 10 14 14 N 1.35313 * 106.17519 * 179.97438 * 13 12 11 15 15 C 1.46491 * 125.87156 * 180.02562 * 14 13 12 16 16 H 1.09001 * 108.77142 * 206.48464 * 15 14 13 17 17 C 1.50474 * 108.87729 * 324.99655 * 15 14 13 18 18 C 1.54246 * 108.68571 * 214.82739 * 17 15 14 19 19 C 1.45384 * 112.49348 * 280.31950 * 18 17 15 20 20 C 1.54241 * 112.55939 * 61.62934 * 19 18 17 21 21 C 1.50477 * 108.51374 * 280.12863 * 20 19 18 22 22 C 1.54055 * 112.50086 * 94.15296 * 21 20 19 23 23 H 1.08998 * 108.72647 * 79.08454 * 22 21 20 24 24 O 1.42904 * 108.81621 * 197.42195 * 22 21 20 25 25 N 1.28722 * 108.26152 * 0.25964 * 14 13 12 26 26 N 1.28633 * 110.17501 * 359.56402 * 25 14 13 27 27 H 0.96995 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46911 * 60.00178 * 9 7 2 29 29 H 1.08993 * 109.47688 * 300.00156 * 9 7 2 30 30 H 1.08997 * 109.47104 * 60.00206 * 10 9 7 31 31 H 1.09006 * 109.46951 * 300.00477 * 10 9 7 32 32 H 1.09006 * 109.46886 * 60.00074 * 11 10 9 33 33 H 1.08994 * 109.46934 * 300.00371 * 11 10 9 34 34 H 1.07994 * 126.91458 * 359.95384 * 13 12 11 35 35 H 1.09002 * 109.62772 * 334.63885 * 17 15 14 36 36 H 1.09005 * 109.62731 * 95.02338 * 17 15 14 37 37 H 1.09000 * 108.89333 * 40.86940 * 18 17 15 38 38 H 1.09002 * 108.89549 * 159.35833 * 18 17 15 39 39 H 1.08995 * 108.72303 * 300.89026 * 19 18 17 40 40 H 1.09007 * 108.90957 * 182.48778 * 19 18 17 41 41 H 1.08994 * 109.63234 * 160.41816 * 20 19 18 42 42 H 1.08997 * 109.79184 * 39.92948 * 20 19 18 43 43 H 1.09006 * 108.87737 * 333.36940 * 21 20 19 44 44 H 1.09003 * 108.87259 * 214.93496 * 21 20 19 45 45 H 0.96699 * 113.99911 * 303.29713 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4805 -4.9871 0.0020 12 6 2.4599 -6.1325 0.0011 13 6 2.5140 -7.1523 0.8894 14 7 3.5439 -7.9382 0.4987 15 6 3.9844 -9.1683 1.1611 16 1 5.0435 -9.3192 0.9523 17 6 3.7979 -9.0150 2.6463 18 6 4.9402 -9.7598 3.3672 19 6 4.7125 -11.1940 3.4363 20 6 4.6279 -11.8475 2.0417 21 6 3.2511 -11.6068 1.4840 22 6 3.1890 -10.3562 0.5866 23 1 3.5930 -10.6085 -0.3938 24 8 1.8228 -9.9654 0.4346 25 7 4.0733 -7.4164 -0.5523 26 7 3.4462 -6.3416 -0.8780 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5574 -0.8881 29 1 0.6248 -2.5563 0.8919 30 1 2.8728 -3.6039 0.8909 31 1 2.8715 -3.6046 -0.8891 32 1 0.8534 -5.0450 -0.8878 33 1 0.8542 -5.0447 0.8922 34 1 1.8659 -7.3074 1.7392 35 1 3.8251 -7.9581 2.9116 36 1 2.8392 -9.4420 2.9410 37 1 5.8723 -9.5795 2.8318 38 1 5.0348 -9.3661 4.3793 39 1 3.7785 -11.3749 3.9682 40 1 5.5286 -11.6549 3.9930 41 1 4.8056 -12.9194 2.1282 42 1 5.3731 -11.4050 1.3809 43 1 2.5523 -11.4824 2.3113 44 1 2.9507 -12.4761 0.8990 45 1 1.2527 -10.6597 0.0768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254127747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:31 Heat of formation + Delta-G solvation = 20.167440 kcal Electronic energy + Delta-G solvation = -23627.670887 eV Core-core repulsion = 20260.370725 eV Total energy + Delta-G solvation = -3367.300162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00521 -39.89527 -36.57127 -35.21210 -34.17650 -32.51064 -32.05434 -30.35053 -30.32784 -27.05032 -25.44209 -25.08035 -23.59207 -22.16692 -21.39872 -20.61119 -20.14988 -19.62765 -17.81326 -17.45754 -16.46079 -16.12142 -15.49145 -15.29995 -14.79327 -14.60299 -14.39557 -14.11538 -13.87223 -13.67081 -13.60092 -13.28096 -12.83702 -12.48622 -12.21975 -11.87180 -11.60657 -11.58651 -11.39979 -11.29421 -11.20812 -11.18336 -10.97230 -10.74238 -10.63465 -10.40842 -10.34420 -10.25352 -9.72651 -9.47033 -9.22616 -9.00241 -8.55746 -8.22488 -5.88454 -3.89506 1.90630 2.40582 2.98874 3.41945 3.45171 3.48996 3.61543 3.81797 4.07774 4.22889 4.32344 4.38950 4.56345 4.58107 4.64361 4.69190 4.82937 4.96986 5.06179 5.19881 5.28742 5.32120 5.36741 5.43958 5.47079 5.50048 5.55146 5.61271 5.65897 5.75907 5.81246 5.90460 6.15489 6.29319 6.39512 6.71361 6.84548 6.95802 7.10502 7.14132 7.33374 7.82315 7.99111 8.13632 8.57689 8.90027 9.17632 9.73610 11.23039 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032262 B = 0.002651 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.698026 B =10560.960475 C =10842.670052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.035 4.035 12 C -0.007 4.007 13 C -0.033 4.033 14 N -0.286 5.286 15 C 0.163 3.837 16 H 0.115 0.885 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.148 4.148 22 C 0.099 3.901 23 H 0.062 0.938 24 O -0.557 6.557 25 N -0.105 5.105 26 N -0.261 5.261 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -29.842 7.839 31.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.074 4.074 12 C -0.145 4.145 13 C -0.183 4.183 14 N -0.080 5.080 15 C 0.061 3.939 16 H 0.133 0.867 17 C -0.172 4.172 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.186 4.186 22 C 0.038 3.962 23 H 0.080 0.920 24 O -0.362 6.362 25 N -0.084 5.084 26 N -0.128 5.128 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.048 -29.307 6.997 31.187 hybrid contribution -0.572 0.274 0.640 0.902 sum 7.476 -29.033 7.637 30.938 Atomic orbital electron populations 1.69958 1.05999 1.26509 1.51320 1.25018 0.94836 0.99133 0.95542 0.86679 0.79583 0.83261 0.78603 1.20249 1.21373 1.20339 1.21262 0.93056 0.91178 1.49963 0.92796 1.19116 0.94020 0.91355 0.97137 1.21568 0.98947 0.92685 1.00792 1.20086 0.94343 0.90607 1.02413 1.22313 0.99323 0.98857 0.93974 1.23112 0.96303 0.94162 1.04691 1.47210 1.21996 1.18573 1.20173 1.21544 0.99807 0.79805 0.92772 0.86721 1.21823 1.01044 1.02784 0.91505 1.20421 0.97902 0.95603 1.01549 1.20516 1.02664 0.95710 0.97042 1.21341 0.96588 1.01243 0.96734 1.22098 0.99047 0.96956 1.00542 1.22595 0.83441 0.92091 0.98065 0.91957 1.86594 1.18676 1.43267 1.87693 1.78212 1.21539 1.06795 1.01810 1.75020 1.06734 1.08058 1.23004 0.93090 0.96506 0.96666 0.93752 0.92605 0.90716 0.90884 0.80223 0.89728 0.89464 0.91610 0.90862 0.91699 0.91617 0.91061 0.91324 0.90302 0.91161 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.39 9.11 -34.44 -0.31 -15.71 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.32 5.13 -26.73 -0.14 -2.45 16 11 C -0.04 -0.67 5.79 -27.88 -0.16 -0.83 16 12 C -0.01 -0.13 6.50 -82.78 -0.54 -0.66 16 13 C -0.03 -0.48 9.24 -17.05 -0.16 -0.63 16 14 N -0.29 -3.94 2.90 -55.46 -0.16 -4.10 16 15 C 0.16 1.47 2.44 -68.64 -0.17 1.30 16 16 H 0.11 0.95 6.66 -51.93 -0.35 0.60 16 17 C -0.13 -0.96 4.53 -27.34 -0.12 -1.08 16 18 C -0.12 -0.61 5.27 -29.66 -0.16 -0.77 16 19 C -0.12 -0.50 5.25 -29.67 -0.16 -0.66 16 20 C -0.12 -0.48 5.60 -27.34 -0.15 -0.64 16 21 C -0.15 -0.66 4.88 -27.44 -0.13 -0.79 16 22 C 0.10 0.72 3.24 -25.62 -0.08 0.63 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 O -0.56 -4.79 11.96 -35.23 -0.42 -5.22 16 25 N -0.11 -1.84 13.17 60.35 0.79 -1.05 16 26 N -0.26 -5.21 12.40 33.29 0.41 -4.79 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 34 H 0.18 2.12 7.89 -52.49 -0.41 1.71 16 35 H 0.08 0.74 7.29 -51.93 -0.38 0.36 16 36 H 0.09 0.59 7.00 -51.93 -0.36 0.23 16 37 H 0.07 0.35 7.49 -51.93 -0.39 -0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.26 7.47 -51.93 -0.39 -0.12 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 0.29 7.00 -51.93 -0.36 -0.07 16 43 H 0.08 0.36 6.63 -51.93 -0.34 0.02 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.38 1.79 9.04 45.56 0.41 2.20 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -35.78 354.06 -7.61 -43.39 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.77 Total: -3.65 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.52 Total: -20.32 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 1.78 Total: -37.05 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.42 Total: -5.22 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.78 -7.61 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254127747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.556 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds