Wall clock time and date at job start Tue Mar 31 2020 07:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99698 * 2 1 4 4 H 1.48504 * 109.46597 * 240.00001 * 3 2 1 5 5 H 1.48492 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47285 * 119.99794 * 3 2 1 7 7 C 1.37879 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46962 * 179.97438 * 11 10 9 13 13 C 1.35347 * 126.74699 * 125.00243 * 12 11 10 14 14 N 1.35313 * 106.17519 * 179.97438 * 13 12 11 15 15 C 1.46491 * 125.87156 * 180.02562 * 14 13 12 16 16 H 1.09001 * 108.77142 * 206.48464 * 15 14 13 17 17 C 1.50474 * 108.87729 * 324.99655 * 15 14 13 18 18 C 1.54246 * 108.68571 * 214.82739 * 17 15 14 19 19 C 1.45384 * 112.49348 * 280.31950 * 18 17 15 20 20 C 1.54241 * 112.55939 * 61.62934 * 19 18 17 21 21 C 1.50477 * 108.51374 * 280.12863 * 20 19 18 22 22 C 1.54055 * 112.50086 * 94.15296 * 21 20 19 23 23 H 1.08998 * 108.72647 * 79.08454 * 22 21 20 24 24 O 1.42904 * 108.81621 * 197.42195 * 22 21 20 25 25 N 1.28722 * 108.26152 * 0.25964 * 14 13 12 26 26 N 1.28633 * 110.17501 * 359.56402 * 25 14 13 27 27 H 0.96995 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46911 * 60.00178 * 9 7 2 29 29 H 1.08993 * 109.47688 * 300.00156 * 9 7 2 30 30 H 1.08997 * 109.47104 * 60.00206 * 10 9 7 31 31 H 1.09006 * 109.46951 * 300.00477 * 10 9 7 32 32 H 1.09006 * 109.46886 * 60.00074 * 11 10 9 33 33 H 1.08994 * 109.46934 * 300.00371 * 11 10 9 34 34 H 1.07994 * 126.91458 * 359.95384 * 13 12 11 35 35 H 1.09002 * 109.62772 * 334.63885 * 17 15 14 36 36 H 1.09005 * 109.62731 * 95.02338 * 17 15 14 37 37 H 1.09000 * 108.89333 * 40.86940 * 18 17 15 38 38 H 1.09002 * 108.89549 * 159.35833 * 18 17 15 39 39 H 1.08995 * 108.72303 * 300.89026 * 19 18 17 40 40 H 1.09007 * 108.90957 * 182.48778 * 19 18 17 41 41 H 1.08994 * 109.63234 * 160.41816 * 20 19 18 42 42 H 1.08997 * 109.79184 * 39.92948 * 20 19 18 43 43 H 1.09006 * 108.87737 * 333.36940 * 21 20 19 44 44 H 1.09003 * 108.87259 * 214.93496 * 21 20 19 45 45 H 0.96699 * 113.99911 * 303.29713 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4805 -4.9871 0.0020 12 6 2.4599 -6.1325 0.0011 13 6 2.5140 -7.1523 0.8894 14 7 3.5439 -7.9382 0.4987 15 6 3.9844 -9.1683 1.1611 16 1 5.0435 -9.3192 0.9523 17 6 3.7979 -9.0150 2.6463 18 6 4.9402 -9.7598 3.3672 19 6 4.7125 -11.1940 3.4363 20 6 4.6279 -11.8475 2.0417 21 6 3.2511 -11.6068 1.4840 22 6 3.1890 -10.3562 0.5866 23 1 3.5930 -10.6085 -0.3938 24 8 1.8228 -9.9654 0.4346 25 7 4.0733 -7.4164 -0.5523 26 7 3.4462 -6.3416 -0.8780 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5574 -0.8881 29 1 0.6248 -2.5563 0.8919 30 1 2.8728 -3.6039 0.8909 31 1 2.8715 -3.6046 -0.8891 32 1 0.8534 -5.0450 -0.8878 33 1 0.8542 -5.0447 0.8922 34 1 1.8659 -7.3074 1.7392 35 1 3.8251 -7.9581 2.9116 36 1 2.8392 -9.4420 2.9410 37 1 5.8723 -9.5795 2.8318 38 1 5.0348 -9.3661 4.3793 39 1 3.7785 -11.3749 3.9682 40 1 5.5286 -11.6549 3.9930 41 1 4.8056 -12.9194 2.1282 42 1 5.3731 -11.4050 1.3809 43 1 2.5523 -11.4824 2.3113 44 1 2.9507 -12.4761 0.8990 45 1 1.2527 -10.6597 0.0768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254127747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:30 Heat of formation + Delta-G solvation = -4.228303 kcal Electronic energy + Delta-G solvation = -23628.728766 eV Core-core repulsion = 20260.370725 eV Total energy + Delta-G solvation = -3368.358041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.22675 -40.47008 -37.09955 -36.77574 -35.47350 -34.37911 -32.62290 -31.97166 -31.18888 -28.86010 -26.18726 -25.72169 -25.38095 -23.18052 -22.65058 -21.68777 -21.25441 -20.60528 -18.72880 -18.31825 -18.12329 -17.37244 -16.54430 -16.20013 -16.08877 -15.84955 -15.45311 -15.28158 -14.79309 -14.50864 -14.31539 -14.15695 -14.03260 -13.78436 -13.46721 -13.26196 -13.00196 -12.78122 -12.66348 -12.50524 -12.34943 -12.07190 -12.05894 -11.95564 -11.68659 -11.54729 -11.42232 -11.32097 -11.27131 -11.11399 -10.84273 -10.77776 -10.51893 -9.95255 -8.17497 -6.27984 0.72702 1.39679 1.43540 1.44583 1.51418 1.60690 2.42998 3.04636 3.14796 3.20392 3.49915 3.57650 3.80051 3.86915 3.93426 3.99565 4.11082 4.15017 4.24946 4.26425 4.43216 4.50702 4.57272 4.61605 4.69398 4.74988 4.87594 4.92999 4.98039 5.04637 5.15617 5.20095 5.21032 5.24368 5.28424 5.32725 5.36255 5.40037 5.49416 5.56124 5.77434 5.81582 5.89991 6.30296 6.72432 6.87590 7.40207 7.60486 8.94092 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032262 B = 0.002651 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.698026 B =10560.960475 C =10842.670052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.026 3.974 10 C -0.085 4.085 11 C -0.024 4.024 12 C -0.034 4.034 13 C -0.011 4.011 14 N -0.270 5.270 15 C 0.151 3.849 16 H 0.120 0.880 17 C -0.128 4.128 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.136 4.136 22 C 0.103 3.897 23 H 0.054 0.946 24 O -0.578 6.578 25 N -0.125 5.125 26 N -0.307 5.307 27 H 0.264 0.736 28 H -0.007 1.007 29 H 0.002 0.998 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.212 0.788 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 -31.384 9.401 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.123 4.123 11 C -0.063 4.063 12 C -0.173 4.173 13 C -0.163 4.163 14 N -0.063 5.063 15 C 0.050 3.950 16 H 0.138 0.862 17 C -0.167 4.167 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.175 4.175 22 C 0.043 3.957 23 H 0.072 0.928 24 O -0.387 6.387 25 N -0.103 5.103 26 N -0.173 5.173 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.640 -30.894 8.551 33.200 hybrid contribution -0.759 0.655 0.184 1.020 sum 7.881 -30.239 8.735 32.447 Atomic orbital electron populations 1.70078 1.07603 1.27823 1.51627 1.25948 0.95835 1.03168 0.94718 0.85533 0.78361 0.78271 0.79078 1.19570 1.20349 1.19149 1.21671 0.93317 0.92764 1.50679 0.92954 1.19008 0.94272 0.92558 0.95237 1.21295 0.97854 0.93395 0.99763 1.19871 0.94257 0.88954 1.03226 1.22227 0.99744 0.99958 0.95379 1.23441 0.95958 0.92730 1.04125 1.47611 1.20818 1.19082 1.18837 1.22112 1.00614 0.78560 0.93683 0.86183 1.21820 1.02437 1.02287 0.90115 1.20407 0.96865 0.96278 1.01434 1.20507 1.03284 0.94756 0.97286 1.21374 0.96094 1.02041 0.96499 1.22012 0.99507 0.95709 1.00225 1.22587 0.82714 0.92154 0.98273 0.92824 1.86532 1.19350 1.44839 1.88000 1.78106 1.22078 1.06729 1.03397 1.74957 1.08054 1.09554 1.24697 0.92683 0.98849 0.97955 0.93842 0.94414 0.91314 0.88712 0.77090 0.91160 0.88538 0.91857 0.90323 0.91190 0.90774 0.89791 0.91762 0.89900 0.89693 0.75124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.55 -33.20 9.11 25.60 0.23 -32.97 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.03 1.48 4.97 29.85 0.15 1.62 16 10 C -0.08 -3.97 5.13 30.60 0.16 -3.81 16 11 C -0.02 -0.91 5.79 29.85 0.17 -0.74 16 12 C -0.03 -1.25 6.50 41.60 0.27 -0.98 16 13 C -0.01 -0.31 9.24 83.49 0.77 0.46 16 14 N -0.27 -7.21 2.90 -329.37 -0.95 -8.16 16 15 C 0.15 2.49 2.44 44.54 0.11 2.60 16 16 H 0.12 1.85 6.66 -2.39 -0.02 1.83 16 17 C -0.13 -1.59 4.53 30.20 0.14 -1.45 16 18 C -0.11 -0.93 5.27 28.69 0.15 -0.78 16 19 C -0.12 -0.65 5.25 28.69 0.15 -0.50 16 20 C -0.12 -0.64 5.60 30.20 0.17 -0.47 16 21 C -0.14 -0.83 4.88 30.13 0.15 -0.68 16 22 C 0.10 1.31 3.24 31.31 0.10 1.41 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 O -0.58 -8.85 11.96 -148.98 -1.78 -10.64 16 25 N -0.13 -4.40 13.17 37.02 0.49 -3.92 16 26 N -0.31 -12.48 12.40 -48.60 -0.60 -13.08 16 27 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 28 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.09 3.15 8.12 -2.39 -0.02 3.13 16 34 H 0.21 4.43 7.89 -2.91 -0.02 4.40 16 35 H 0.07 1.10 7.29 -2.39 -0.02 1.09 16 36 H 0.10 1.03 7.00 -2.38 -0.02 1.02 16 37 H 0.06 0.56 7.49 -2.39 -0.02 0.55 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.34 7.47 -2.39 -0.02 0.32 16 40 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.06 0.41 7.00 -2.39 -0.02 0.39 16 43 H 0.08 0.49 6.63 -2.38 -0.02 0.47 16 44 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.40 2.96 9.04 -74.06 -0.67 2.29 16 Total: -1.00 -78.30 354.06 2.94 -75.35 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.30 Total: 5.95 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 3.18 Total: -35.75 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -0.79 Total: -83.24 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.78 Total: -10.64 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.30 2.94 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254127747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.126 kcal (2) G-P(sol) polarization free energy of solvation -78.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds