Wall clock time and date at job start Tue Mar 31 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48505 * 109.46894 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47041 * 30.00260 * 3 2 1 6 6 H 1.48500 * 109.47044 * 150.00466 * 3 2 1 7 7 C 1.37885 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99663 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47238 * 174.98918 * 9 7 2 11 11 C 1.46902 * 110.99510 * 64.99160 * 10 9 7 12 12 C 1.53240 * 109.33559 * 172.75091 * 11 10 9 13 13 N 1.47082 * 108.52547 * 53.82770 * 12 11 10 14 14 C 1.34774 * 120.88161 * 128.83698 * 13 12 11 15 15 O 1.21598 * 119.99804 * 5.13855 * 14 13 12 16 16 N 1.34773 * 120.00132 * 185.13977 * 14 13 12 17 17 C 1.46500 * 120.00106 * 185.10241 * 16 14 13 18 18 H 1.09001 * 109.35948 * 34.99084 * 17 16 14 19 19 C 1.50069 * 109.35498 * 275.27651 * 17 16 14 20 20 C 1.29451 * 124.07038 * 222.63836 * 19 17 16 21 21 C 1.50060 * 124.07770 * 0.49085 * 20 19 17 22 22 C 1.53025 * 110.14789 * 342.86970 * 21 20 19 23 23 C 1.53020 * 109.36065 * 154.72330 * 17 16 14 24 24 C 1.47077 * 118.23571 * 308.81957 * 13 12 11 25 25 C 1.46901 * 110.99872 * 300.69494 * 10 9 7 26 26 H 0.96998 * 119.99863 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47317 * 54.99296 * 9 7 2 28 28 H 1.08998 * 109.47296 * 294.99296 * 9 7 2 29 29 H 1.08995 * 109.49467 * 52.79067 * 11 10 9 30 30 H 1.09000 * 109.49572 * 292.70236 * 11 10 9 31 31 H 1.09001 * 109.62669 * 173.54307 * 12 11 10 32 32 H 1.09008 * 109.62676 * 294.12004 * 12 11 10 33 33 H 0.97002 * 120.00017 * 5.09905 * 16 14 13 34 34 H 1.07993 * 117.96542 * 42.66010 * 19 17 16 35 35 H 1.08000 * 117.95771 * 180.46485 * 20 19 17 36 36 H 1.09002 * 109.36134 * 103.07511 * 21 20 19 37 37 H 1.09005 * 109.35772 * 222.79818 * 21 20 19 38 38 H 1.08998 * 109.64275 * 169.12183 * 22 21 20 39 39 H 1.09002 * 109.64090 * 289.53637 * 22 21 20 40 40 H 1.09004 * 109.63638 * 289.32213 * 23 17 16 41 41 H 1.08995 * 109.64312 * 49.95400 * 23 17 16 42 42 H 1.08998 * 109.62802 * 291.46638 * 24 13 12 43 43 H 1.09000 * 109.78610 * 170.98832 * 24 13 12 44 44 H 1.09000 * 109.49569 * 307.20780 * 25 10 9 45 45 H 1.09000 * 109.49440 * 67.28979 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2011 -3.6131 -0.1221 11 6 3.0760 -3.6896 1.0555 12 6 3.9242 -4.9633 0.9754 13 7 4.6214 -4.9798 -0.3196 14 6 5.9524 -5.1812 -0.3861 15 8 6.5785 -5.4449 0.6224 16 7 6.5894 -5.0901 -1.5703 17 6 8.0142 -5.4179 -1.6628 18 1 8.2422 -6.2350 -0.9782 19 6 8.8270 -4.2135 -1.2877 20 6 9.8870 -3.8274 -1.9227 21 6 10.4450 -4.5242 -3.1289 22 6 9.8680 -5.9376 -3.2351 23 6 8.3440 -5.8480 -3.0938 24 6 3.8276 -4.7712 -1.5400 25 6 2.9832 -3.5051 -1.3609 26 1 -0.4850 0.8400 0.0004 27 1 0.5585 -2.5189 -0.8420 28 1 0.6938 -2.5970 0.9311 29 1 2.4677 -3.7139 1.9596 30 1 3.7301 -2.8180 1.0799 31 1 4.6545 -4.9683 1.7846 32 1 3.2792 -5.8384 1.0552 33 1 6.1044 -4.8076 -2.3614 34 1 8.5081 -3.6329 -0.4348 35 1 10.4014 -2.9490 -1.5622 36 1 10.1854 -3.9599 -4.0246 37 1 11.5299 -4.5846 -3.0417 38 1 10.1221 -6.3651 -4.2050 39 1 10.2783 -6.5614 -2.4410 40 1 7.9018 -6.8240 -3.2940 41 1 7.9516 -5.1134 -3.7968 42 1 3.1733 -5.6278 -1.7020 43 1 4.4915 -4.6506 -2.3959 44 1 2.3076 -3.3955 -2.2093 45 1 3.6385 -2.6360 -1.3028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261934741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:59 Heat of formation + Delta-G solvation = -5.675612 kcal Electronic energy + Delta-G solvation = -24148.880006 eV Core-core repulsion = 20780.459205 eV Total energy + Delta-G solvation = -3368.420801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35399 -38.69729 -37.37545 -34.43793 -34.13656 -32.31561 -31.26123 -30.72662 -29.37858 -27.80880 -25.32449 -23.51743 -22.99492 -22.58059 -22.17351 -20.54981 -19.25621 -18.29409 -17.76024 -16.68953 -16.34739 -15.94573 -15.23290 -14.92735 -14.65499 -14.39351 -14.12761 -13.93528 -13.79308 -13.59194 -13.27618 -13.01537 -12.83469 -12.72766 -12.43659 -12.15273 -11.81585 -11.42954 -11.17459 -11.08028 -10.98900 -10.91239 -10.68923 -10.61774 -10.59363 -10.29337 -9.94989 -9.83625 -9.65998 -9.22182 -9.06863 -8.48773 -8.28183 -7.26954 -6.08477 -4.17923 2.07761 2.90303 3.23279 3.30822 3.34307 3.38121 4.00144 4.36109 4.46225 4.51346 4.69708 4.88575 4.94019 5.13523 5.21713 5.23357 5.30556 5.33240 5.38116 5.48151 5.52072 5.60757 5.62127 5.72447 5.76269 5.90201 5.96104 6.01187 6.06781 6.15126 6.40552 6.41640 6.57570 6.60291 6.70473 6.74524 6.83122 7.14425 7.18885 7.45809 7.83193 7.93694 8.11003 8.17630 8.22396 8.76707 8.92077 9.49519 10.96582 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003787 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.441759 B = 7392.446628 C = 8263.951971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.048 3.952 12 C 0.134 3.866 13 N -0.623 5.623 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.744 5.744 17 C 0.195 3.805 18 H 0.094 0.906 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.092 4.092 22 C -0.116 4.116 23 C -0.126 4.126 24 C 0.115 3.885 25 C 0.050 3.950 26 H 0.263 0.737 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.820 -11.649 -7.889 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.082 4.082 12 C 0.011 3.989 13 N -0.360 5.360 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.401 5.401 17 C 0.090 3.910 18 H 0.112 0.888 19 C -0.174 4.174 20 C -0.175 4.175 21 C -0.129 4.129 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.008 4.008 25 C -0.079 4.079 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.809 -12.185 -7.152 21.202 hybrid contribution 0.560 2.235 -0.301 2.323 sum 16.369 -9.950 -7.453 20.554 Atomic orbital electron populations 1.69934 1.05991 1.26912 1.49970 1.24950 0.94755 0.99134 0.94815 0.86659 0.79963 0.83648 0.78157 1.20619 1.21041 1.19995 1.21733 0.93251 0.92122 1.51941 0.92648 1.19767 0.90710 0.85331 0.97972 1.62486 1.16916 1.46523 1.00451 1.22295 0.95238 0.95546 0.95075 1.21700 0.94702 0.98529 0.83970 1.47354 1.04962 1.75067 1.08617 1.15849 0.81560 0.77983 0.83662 1.90880 1.65842 1.56690 1.34237 1.45344 1.10156 1.74248 1.10319 1.19542 0.78880 0.95619 0.96920 0.88826 1.22533 0.96360 0.98441 1.00077 1.22038 0.97917 1.00253 0.97331 1.20483 1.00116 0.95465 0.96836 1.21559 0.94551 0.97032 1.02270 1.21859 0.96885 1.02067 0.95632 1.21840 0.93789 0.99498 0.85693 1.22217 0.96190 0.94712 0.94805 0.92741 0.94599 0.95264 0.90357 0.94106 0.89520 0.91564 0.76745 0.87568 0.87929 0.90850 0.91093 0.91187 0.91351 0.90933 0.91060 0.91050 0.91377 0.90384 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.55 -14.84 7.75 -34.44 -0.27 -15.11 16 8 H 0.06 1.51 5.88 -52.49 -0.31 1.20 16 9 C 0.19 4.67 5.11 -4.98 -0.03 4.64 16 10 N -0.54 -11.04 4.83 -235.76 -1.14 -12.18 16 11 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 12 C 0.13 2.23 6.58 -3.60 -0.02 2.21 16 13 N -0.62 -9.96 3.01 -178.19 -0.54 -10.49 16 14 C 0.71 11.59 8.25 -86.92 -0.72 10.87 16 15 O -0.60 -11.71 15.54 5.28 0.08 -11.62 16 16 N -0.74 -9.44 4.95 -60.10 -0.30 -9.73 16 17 C 0.20 2.22 2.67 -69.38 -0.19 2.04 16 18 H 0.09 1.21 7.65 -51.93 -0.40 0.81 16 19 C -0.15 -1.86 9.33 -35.90 -0.33 -2.20 16 20 C -0.16 -1.56 9.80 -35.91 -0.35 -1.91 16 21 C -0.09 -0.70 6.11 -28.18 -0.17 -0.87 16 22 C -0.12 -0.82 6.01 -26.55 -0.16 -0.98 16 23 C -0.13 -1.03 5.46 -26.56 -0.15 -1.17 16 24 C 0.12 1.63 6.60 -3.61 -0.02 1.61 16 25 C 0.05 0.91 5.15 -3.70 -0.02 0.89 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 30 H 0.04 0.88 6.92 -51.93 -0.36 0.52 16 31 H 0.09 1.48 7.10 -51.93 -0.37 1.11 16 32 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.40 4.25 6.11 -40.82 -0.25 4.00 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.76 5.64 -51.93 -0.29 0.47 16 44 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 45 H 0.04 0.88 6.79 -51.93 -0.35 0.53 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -31.16 349.98 -10.81 -41.98 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.37 Total: 2.84 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.54 Total: 2.65 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -1.24 Total: -57.40 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.16 -10.81 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261934741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.300 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds