Wall clock time and date at job start Tue Mar 31 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99951 * 2 1 4 4 H 1.48505 * 109.46894 * 269.99987 * 3 2 1 5 5 H 1.48498 * 109.47041 * 30.00260 * 3 2 1 6 6 H 1.48500 * 109.47044 * 150.00466 * 3 2 1 7 7 C 1.37885 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99663 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47238 * 174.98918 * 9 7 2 11 11 C 1.46902 * 110.99510 * 64.99160 * 10 9 7 12 12 C 1.53240 * 109.33559 * 172.75091 * 11 10 9 13 13 N 1.47082 * 108.52547 * 53.82770 * 12 11 10 14 14 C 1.34774 * 120.88161 * 128.83698 * 13 12 11 15 15 O 1.21598 * 119.99804 * 5.13855 * 14 13 12 16 16 N 1.34773 * 120.00132 * 185.13977 * 14 13 12 17 17 C 1.46500 * 120.00106 * 185.10241 * 16 14 13 18 18 H 1.09001 * 109.35948 * 34.99084 * 17 16 14 19 19 C 1.50069 * 109.35498 * 275.27651 * 17 16 14 20 20 C 1.29451 * 124.07038 * 222.63836 * 19 17 16 21 21 C 1.50060 * 124.07770 * 0.49085 * 20 19 17 22 22 C 1.53025 * 110.14789 * 342.86970 * 21 20 19 23 23 C 1.53020 * 109.36065 * 154.72330 * 17 16 14 24 24 C 1.47077 * 118.23571 * 308.81957 * 13 12 11 25 25 C 1.46901 * 110.99872 * 300.69494 * 10 9 7 26 26 H 0.96998 * 119.99863 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47317 * 54.99296 * 9 7 2 28 28 H 1.08998 * 109.47296 * 294.99296 * 9 7 2 29 29 H 1.08995 * 109.49467 * 52.79067 * 11 10 9 30 30 H 1.09000 * 109.49572 * 292.70236 * 11 10 9 31 31 H 1.09001 * 109.62669 * 173.54307 * 12 11 10 32 32 H 1.09008 * 109.62676 * 294.12004 * 12 11 10 33 33 H 0.97002 * 120.00017 * 5.09905 * 16 14 13 34 34 H 1.07993 * 117.96542 * 42.66010 * 19 17 16 35 35 H 1.08000 * 117.95771 * 180.46485 * 20 19 17 36 36 H 1.09002 * 109.36134 * 103.07511 * 21 20 19 37 37 H 1.09005 * 109.35772 * 222.79818 * 21 20 19 38 38 H 1.08998 * 109.64275 * 169.12183 * 22 21 20 39 39 H 1.09002 * 109.64090 * 289.53637 * 22 21 20 40 40 H 1.09004 * 109.63638 * 289.32213 * 23 17 16 41 41 H 1.08995 * 109.64312 * 49.95400 * 23 17 16 42 42 H 1.08998 * 109.62802 * 291.46638 * 24 13 12 43 43 H 1.09000 * 109.78610 * 170.98832 * 24 13 12 44 44 H 1.09000 * 109.49569 * 307.20780 * 25 10 9 45 45 H 1.09000 * 109.49440 * 67.28979 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2011 -3.6131 -0.1221 11 6 3.0760 -3.6896 1.0555 12 6 3.9242 -4.9633 0.9754 13 7 4.6214 -4.9798 -0.3196 14 6 5.9524 -5.1812 -0.3861 15 8 6.5785 -5.4449 0.6224 16 7 6.5894 -5.0901 -1.5703 17 6 8.0142 -5.4179 -1.6628 18 1 8.2422 -6.2350 -0.9782 19 6 8.8270 -4.2135 -1.2877 20 6 9.8870 -3.8274 -1.9227 21 6 10.4450 -4.5242 -3.1289 22 6 9.8680 -5.9376 -3.2351 23 6 8.3440 -5.8480 -3.0938 24 6 3.8276 -4.7712 -1.5400 25 6 2.9832 -3.5051 -1.3609 26 1 -0.4850 0.8400 0.0004 27 1 0.5585 -2.5189 -0.8420 28 1 0.6938 -2.5970 0.9311 29 1 2.4677 -3.7139 1.9596 30 1 3.7301 -2.8180 1.0799 31 1 4.6545 -4.9683 1.7846 32 1 3.2792 -5.8384 1.0552 33 1 6.1044 -4.8076 -2.3614 34 1 8.5081 -3.6329 -0.4348 35 1 10.4014 -2.9490 -1.5622 36 1 10.1854 -3.9599 -4.0246 37 1 11.5299 -4.5846 -3.0417 38 1 10.1221 -6.3651 -4.2050 39 1 10.2783 -6.5614 -2.4410 40 1 7.9018 -6.8240 -3.2940 41 1 7.9516 -5.1134 -3.7968 42 1 3.1733 -5.6278 -1.7020 43 1 4.4915 -4.6506 -2.3959 44 1 2.3076 -3.3955 -2.2093 45 1 3.6385 -2.6360 -1.3028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261934741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:59 Heat of formation + Delta-G solvation = -26.243777 kcal Electronic energy + Delta-G solvation = -24149.771909 eV Core-core repulsion = 20780.459205 eV Total energy + Delta-G solvation = -3369.312704 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57626 -39.74676 -38.72943 -36.01825 -35.27476 -34.26238 -32.10198 -31.97944 -30.50010 -29.37225 -27.09695 -24.73022 -24.41994 -23.59899 -23.29954 -22.00054 -20.57257 -19.47016 -18.73417 -18.35041 -17.71383 -17.04663 -16.73976 -16.42739 -16.03414 -15.74269 -15.55356 -15.29838 -15.08313 -14.67540 -14.57014 -14.14516 -13.73715 -13.71949 -13.56550 -13.45432 -13.20757 -13.00443 -12.95483 -12.55028 -12.48689 -12.27867 -12.05976 -11.95932 -11.83426 -11.65129 -11.55351 -11.35815 -11.15822 -10.63563 -10.24622 -10.01849 -9.59934 -9.05012 -8.19293 -6.38400 1.17768 1.32160 1.34132 1.43701 1.74964 2.09986 2.33450 2.90512 3.05719 3.29621 3.72749 3.81374 3.99516 4.06089 4.10544 4.18403 4.24308 4.35216 4.41620 4.47714 4.53118 4.61351 4.62944 4.73627 4.77180 4.87161 4.93715 5.04176 5.04414 5.13892 5.17614 5.19988 5.30395 5.31593 5.37636 5.45179 5.51908 5.68338 5.70654 5.88747 5.98417 6.03124 6.20371 6.44102 6.81642 6.93902 7.33099 7.52176 8.82967 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003787 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.441759 B = 7392.446628 C = 8263.951971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.048 0.952 9 C 0.201 3.799 10 N -0.534 5.534 11 C 0.054 3.946 12 C 0.145 3.855 13 N -0.628 5.628 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.729 5.729 17 C 0.196 3.804 18 H 0.073 0.927 19 C -0.185 4.185 20 C -0.136 4.136 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.119 4.119 24 C 0.126 3.874 25 C 0.050 3.950 26 H 0.266 0.734 27 H 0.016 0.984 28 H 0.005 0.995 29 H 0.077 0.923 30 H 0.011 0.989 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.407 0.593 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.577 -12.345 -10.197 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.066 0.934 9 C 0.074 3.926 10 N -0.258 5.258 11 C -0.075 4.075 12 C 0.021 3.979 13 N -0.364 5.364 14 C 0.405 3.595 15 O -0.516 6.516 16 N -0.386 5.386 17 C 0.091 3.909 18 H 0.091 0.909 19 C -0.205 4.205 20 C -0.155 4.155 21 C -0.129 4.129 22 C -0.152 4.152 23 C -0.156 4.156 24 C 0.003 3.997 25 C -0.079 4.079 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.024 0.976 29 H 0.095 0.905 30 H 0.029 0.971 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 17.580 -12.888 -9.507 23.781 hybrid contribution 0.067 2.466 0.426 2.503 sum 17.647 -10.422 -9.081 22.417 Atomic orbital electron populations 1.70036 1.07327 1.27913 1.50845 1.25723 0.95562 1.02507 0.94522 0.85656 0.78463 0.79636 0.78523 1.19556 1.20420 1.20154 1.21928 0.92988 0.93223 1.51507 0.93365 1.19433 0.91086 0.86279 0.95773 1.62427 1.17273 1.44136 1.01978 1.22252 0.94704 0.95906 0.94649 1.21516 0.94323 0.97436 0.84606 1.47402 1.05150 1.75020 1.08848 1.16035 0.81473 0.77809 0.84189 1.90852 1.66571 1.58373 1.35843 1.45289 1.10787 1.73110 1.09433 1.19651 0.77721 0.94605 0.98879 0.90882 1.22361 0.98321 0.99509 1.00314 1.22323 0.96302 0.99648 0.97236 1.20582 1.00969 0.95651 0.95732 1.21591 0.93465 0.96705 1.03474 1.21855 0.97949 1.02823 0.93021 1.21886 0.93963 0.97855 0.86004 1.22291 0.95983 0.96033 0.93593 0.92480 0.96593 0.97645 0.90511 0.97108 0.90096 0.89717 0.75418 0.91207 0.87725 0.89390 0.89466 0.88742 0.91801 0.89719 0.90042 0.89082 0.87861 0.89945 0.96460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 13.29 21.45 0.28 -53.78 16 2 C 0.02 0.94 5.46 84.66 0.46 1.40 16 3 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.56 -30.69 7.75 25.60 0.20 -30.49 16 8 H 0.05 2.69 5.88 -2.91 -0.02 2.67 16 9 C 0.20 10.30 5.11 85.56 0.44 10.73 16 10 N -0.53 -22.09 4.83 -899.82 -4.35 -26.44 16 11 C 0.05 2.14 5.24 86.38 0.45 2.59 16 12 C 0.14 4.79 6.58 86.35 0.57 5.36 16 13 N -0.63 -19.48 3.01 -835.92 -2.52 -21.99 16 14 C 0.70 22.75 8.25 179.06 1.48 24.23 16 15 O -0.63 -25.33 15.54 -4.03 -0.06 -25.40 16 16 N -0.73 -17.62 4.95 -462.33 -2.29 -19.91 16 17 C 0.20 4.28 2.67 44.05 0.12 4.40 16 18 H 0.07 1.89 7.65 -2.39 -0.02 1.87 16 19 C -0.19 -4.47 9.33 27.03 0.25 -4.22 16 20 C -0.14 -2.52 9.80 27.03 0.26 -2.26 16 21 C -0.09 -1.10 6.11 29.66 0.18 -0.92 16 22 C -0.11 -1.24 6.01 30.71 0.18 -1.05 16 23 C -0.12 -1.58 5.46 30.71 0.17 -1.41 16 24 C 0.13 3.28 6.60 86.35 0.57 3.85 16 25 C 0.05 1.79 5.15 86.38 0.44 2.23 16 26 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.01 0.30 8.07 -2.39 -0.02 0.28 16 29 H 0.08 2.99 8.05 -2.39 -0.02 2.97 16 30 H 0.01 0.48 6.92 -2.39 -0.02 0.46 16 31 H 0.08 2.80 7.10 -2.39 -0.02 2.78 16 32 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.41 7.74 6.11 -92.71 -0.57 7.17 16 34 H 0.07 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.10 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 40 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.08 0.95 8.11 -2.39 -0.02 0.93 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 1.97 5.64 -2.39 -0.01 1.96 16 44 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 45 H 0.02 0.70 6.79 -2.39 -0.02 0.69 16 Total: -1.00 -69.58 349.98 -0.72 -70.29 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.41 Total: 16.72 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.78 Total: 14.44 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -8.87 Total: -122.12 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.58 -0.72 -70.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261934741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.050 kcal (2) G-P(sol) polarization free energy of solvation -69.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds