Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46700 * 2 1 4 4 C 1.42898 * 113.99802 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47208 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.02474 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.05414 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.94614 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47224 * 89.99935 * 8 7 6 10 10 C 1.46903 * 111.00000 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47052 * 34.99701 * 10 9 8 12 12 C 1.53000 * 109.47096 * 275.00251 * 10 9 8 13 13 C 1.50694 * 109.47066 * 155.00016 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.38290 * 120.11285 * 0.29524 * 7 6 5 22 22 C 1.38126 * 120.05205 * 359.45425 * 21 7 6 23 23 C 1.38710 * 120.02994 * 180.02562 * 5 4 3 24 24 O 1.35896 * 120.05602 * 0.02562 * 23 5 4 25 25 C 1.42895 * 117.00363 * 179.97438 * 24 23 5 26 26 H 1.08998 * 109.47229 * 60.00142 * 1 2 3 27 27 H 1.09004 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47041 * 299.99667 * 1 2 3 29 29 H 1.08996 * 109.47041 * 240.00333 * 2 1 3 30 30 H 1.08998 * 109.47229 * 119.99858 * 2 1 3 31 31 H 1.08998 * 109.47243 * 59.99999 * 4 3 2 32 32 H 1.09002 * 109.47182 * 299.99994 * 4 3 2 33 33 H 1.07995 * 119.97435 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.46917 * 329.99814 * 8 7 6 35 35 H 1.09001 * 109.47224 * 209.99919 * 8 7 6 36 36 H 1.00896 * 110.99858 * 303.95284 * 9 8 7 37 37 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 39 39 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 41 41 H 1.07996 * 119.97359 * 179.70532 * 21 7 6 42 42 H 1.08000 * 120.02666 * 180.25079 * 22 21 7 43 43 H 1.08994 * 109.47382 * 300.00184 * 25 24 23 44 44 H 1.09000 * 109.47142 * 59.99936 * 25 24 23 45 45 H 1.09001 * 109.47630 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 -0.0012 6 6 2.8418 3.8927 -0.0005 7 6 3.1975 5.2286 -0.0005 8 6 2.1293 6.2915 0.0007 9 7 1.7834 6.6366 1.3861 10 6 0.7421 7.6719 1.4265 11 1 0.0521 7.5260 0.5953 12 6 1.3912 9.0528 1.3139 13 6 -0.0117 7.5757 2.7279 14 1 0.2557 6.8207 3.4524 15 6 -1.0435 8.4510 2.9932 16 7 -1.3695 9.3701 2.1108 17 14 -1.9783 8.3313 4.6061 18 1 -3.0309 9.3780 4.6470 19 1 -2.6079 6.9909 4.7150 20 1 -1.0387 8.5303 5.7387 21 6 4.5320 5.5912 -0.0073 22 6 5.5130 4.6189 -0.0027 23 6 5.1586 3.2774 -0.0023 24 8 6.1220 2.3189 -0.0035 25 6 7.4799 2.7638 -0.0052 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8332 0.9768 -0.8908 32 1 3.8340 0.9765 0.8892 33 1 1.7989 3.6121 0.0008 34 1 1.2435 5.9170 -0.5124 35 1 2.4990 7.1788 -0.5132 36 1 1.4989 5.8177 1.9024 37 1 0.6186 9.8210 1.3443 38 1 2.0812 9.1988 2.1450 39 1 1.9364 9.1223 0.3726 40 1 -2.0957 9.9856 2.2974 41 1 4.8073 6.6354 -0.0121 42 1 6.5551 4.9025 -0.0039 43 1 7.6641 3.3651 -0.8954 44 1 7.6663 3.3653 0.8845 45 1 8.1452 1.9004 -0.0055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308506508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -66.318482 kcal Electronic energy + Delta-G solvation = -23310.014857 eV Core-core repulsion = 19906.671633 eV Total energy + Delta-G solvation = -3403.343224 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26217 -38.16735 -37.55714 -35.57241 -32.96220 -32.29793 -30.68080 -30.46353 -28.19582 -27.27573 -25.97437 -25.22484 -23.90999 -22.91764 -21.66267 -20.42738 -19.67582 -17.99223 -16.92270 -16.53672 -16.30295 -15.88942 -15.72699 -15.17252 -14.74471 -14.30852 -14.08257 -13.87710 -13.86050 -13.53662 -13.46787 -12.64307 -12.58154 -12.37887 -12.33515 -12.04367 -11.64897 -11.56433 -11.53146 -11.20431 -11.10855 -10.90104 -10.79022 -10.68299 -10.54084 -10.22198 -10.08270 -9.87522 -9.77937 -8.79914 -8.63479 -8.43262 -7.89546 -7.19075 -5.98597 -4.04695 1.50584 1.58770 3.22498 3.34434 3.38278 3.41647 3.54885 3.88933 4.44481 4.79372 4.89153 4.92711 5.00120 5.01407 5.09681 5.18285 5.23532 5.28474 5.32514 5.33946 5.44595 5.44799 5.53802 5.65926 5.71983 5.80830 5.90620 5.99590 6.03379 6.30081 6.33326 6.45446 6.50650 6.87951 6.95660 7.00078 7.18152 7.20320 7.27605 7.40422 7.54914 7.82476 7.94548 8.31852 8.44681 8.72423 9.06068 9.60965 11.07738 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003791 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.014718 B = 7384.361056 C = 8950.953952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.384 6.384 4 C 0.120 3.880 5 C -0.124 4.124 6 C -0.054 4.054 7 C -0.100 4.100 8 C 0.100 3.900 9 N -0.683 5.683 10 C 0.210 3.790 11 H 0.001 0.999 12 C -0.124 4.124 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.288 1.288 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.061 4.061 22 C -0.207 4.207 23 C 0.119 3.881 24 O -0.322 6.322 25 C 0.029 3.971 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.137 0.863 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.332 0.668 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.004 0.996 40 H 0.261 0.739 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.053 -16.447 -6.780 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.303 6.303 4 C 0.044 3.956 5 C -0.125 4.125 6 C -0.073 4.073 7 C -0.101 4.101 8 C -0.030 4.030 9 N -0.314 5.314 10 C 0.103 3.897 11 H 0.019 0.981 12 C -0.182 4.182 13 C -0.556 4.556 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.080 4.080 22 C -0.226 4.226 23 C 0.074 3.926 24 O -0.235 6.235 25 C -0.066 4.066 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.278 -15.871 -6.741 21.763 hybrid contribution -0.834 -0.471 0.632 1.148 sum 12.444 -16.342 -6.109 21.430 Atomic orbital electron populations 1.21751 0.93632 1.02079 1.03544 1.22428 0.95694 0.83759 0.99845 1.87887 1.20738 1.26263 1.95449 1.20887 0.81085 0.93225 1.00416 1.18860 0.89977 0.95017 1.08598 1.20785 0.99509 0.91043 0.95939 1.20013 0.94838 0.94226 1.00979 1.20835 0.94101 0.95010 0.93013 1.60803 1.46999 1.14176 1.09408 1.19125 0.86555 0.87855 0.96152 0.98105 1.21712 0.99601 1.00618 0.96292 1.21236 1.15250 1.16398 1.02698 0.92270 1.24914 0.96966 0.95198 0.96899 1.69891 1.29517 1.18854 1.34730 0.86586 0.79406 0.77628 0.83931 1.21330 1.20309 1.20218 1.20871 0.91889 0.99105 0.96087 1.21090 1.00093 0.91623 1.09786 1.18600 0.87604 0.87629 0.98798 1.86002 1.15044 1.33319 1.89179 1.23000 0.80538 1.01648 1.01416 0.91754 0.91271 0.91537 0.93592 0.93476 0.92427 0.92297 0.84566 0.95366 0.91124 0.85093 0.90129 0.95008 0.97745 0.92915 0.85629 0.85673 0.92772 0.92659 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.06 0.60 6.66 37.16 0.25 0.85 16 3 O -0.38 -5.17 8.82 -35.23 -0.31 -5.48 16 4 C 0.12 1.53 5.80 36.01 0.21 1.74 16 5 C -0.12 -1.82 5.89 -104.47 -0.62 -2.43 16 6 C -0.05 -0.87 9.03 -39.60 -0.36 -1.23 16 7 C -0.10 -1.66 5.39 -104.60 -0.56 -2.23 16 8 C 0.10 1.89 5.61 -4.98 -0.03 1.86 16 9 N -0.68 -15.14 6.29 -109.22 -0.69 -15.83 16 10 C 0.21 5.46 2.60 -68.87 -0.18 5.28 16 11 H 0.00 0.04 7.80 -51.92 -0.40 -0.37 16 12 C -0.12 -3.14 9.19 37.16 0.34 -2.80 16 13 C -0.52 -14.49 8.59 -34.44 -0.30 -14.79 16 14 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 17 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.06 -0.91 9.69 -39.60 -0.38 -1.30 16 22 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 23 C 0.12 1.63 6.66 -39.22 -0.26 1.37 16 24 O -0.32 -3.84 9.92 -19.41 -0.19 -4.03 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.14 2.24 7.00 -52.49 -0.37 1.88 16 34 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 35 H 0.07 1.33 7.38 -51.93 -0.38 0.94 16 36 H 0.33 7.37 8.21 -39.29 -0.32 7.05 16 37 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 43 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 44 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -30.51 367.57 -8.49 -39.00 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.48 Total: 4.35 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.96 Total: -14.96 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.06 Total: -41.00 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.50 Total: -9.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.51 -8.49 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308506508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.314 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds