Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46700 * 2 1 4 4 C 1.42898 * 113.99802 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47208 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.02474 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.05414 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.94614 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47224 * 89.99935 * 8 7 6 10 10 C 1.46903 * 111.00000 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.47052 * 34.99701 * 10 9 8 12 12 C 1.53000 * 109.47096 * 275.00251 * 10 9 8 13 13 C 1.50694 * 109.47066 * 155.00016 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.38290 * 120.11285 * 0.29524 * 7 6 5 22 22 C 1.38126 * 120.05205 * 359.45425 * 21 7 6 23 23 C 1.38710 * 120.02994 * 180.02562 * 5 4 3 24 24 O 1.35896 * 120.05602 * 0.02562 * 23 5 4 25 25 C 1.42895 * 117.00363 * 179.97438 * 24 23 5 26 26 H 1.08998 * 109.47229 * 60.00142 * 1 2 3 27 27 H 1.09004 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47041 * 299.99667 * 1 2 3 29 29 H 1.08996 * 109.47041 * 240.00333 * 2 1 3 30 30 H 1.08998 * 109.47229 * 119.99858 * 2 1 3 31 31 H 1.08998 * 109.47243 * 59.99999 * 4 3 2 32 32 H 1.09002 * 109.47182 * 299.99994 * 4 3 2 33 33 H 1.07995 * 119.97435 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.46917 * 329.99814 * 8 7 6 35 35 H 1.09001 * 109.47224 * 209.99919 * 8 7 6 36 36 H 1.00896 * 110.99858 * 303.95284 * 9 8 7 37 37 H 1.08995 * 109.47131 * 180.02562 * 12 10 9 38 38 H 1.09002 * 109.47106 * 299.99893 * 12 10 9 39 39 H 1.08998 * 109.47089 * 59.99840 * 12 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 41 41 H 1.07996 * 119.97359 * 179.70532 * 21 7 6 42 42 H 1.08000 * 120.02666 * 180.25079 * 22 21 7 43 43 H 1.08994 * 109.47382 * 300.00184 * 25 24 23 44 44 H 1.09000 * 109.47142 * 59.99936 * 25 24 23 45 45 H 1.09001 * 109.47630 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 -0.0012 6 6 2.8418 3.8927 -0.0005 7 6 3.1975 5.2286 -0.0005 8 6 2.1293 6.2915 0.0007 9 7 1.7834 6.6366 1.3861 10 6 0.7421 7.6719 1.4265 11 1 0.0521 7.5260 0.5953 12 6 1.3912 9.0528 1.3139 13 6 -0.0117 7.5757 2.7279 14 1 0.2557 6.8207 3.4524 15 6 -1.0435 8.4510 2.9932 16 7 -1.3695 9.3701 2.1108 17 14 -1.9783 8.3313 4.6061 18 1 -3.0309 9.3780 4.6470 19 1 -2.6079 6.9909 4.7150 20 1 -1.0387 8.5303 5.7387 21 6 4.5320 5.5912 -0.0073 22 6 5.5130 4.6189 -0.0027 23 6 5.1586 3.2774 -0.0023 24 8 6.1220 2.3189 -0.0035 25 6 7.4799 2.7638 -0.0052 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8332 0.9768 -0.8908 32 1 3.8340 0.9765 0.8892 33 1 1.7989 3.6121 0.0008 34 1 1.2435 5.9170 -0.5124 35 1 2.4990 7.1788 -0.5132 36 1 1.4989 5.8177 1.9024 37 1 0.6186 9.8210 1.3443 38 1 2.0812 9.1988 2.1450 39 1 1.9364 9.1223 0.3726 40 1 -2.0957 9.9856 2.2974 41 1 4.8073 6.6354 -0.0121 42 1 6.5551 4.9025 -0.0039 43 1 7.6641 3.3651 -0.8954 44 1 7.6663 3.3653 0.8845 45 1 8.1452 1.9004 -0.0055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308506508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -85.071992 kcal Electronic energy + Delta-G solvation = -23310.828070 eV Core-core repulsion = 19906.671633 eV Total energy + Delta-G solvation = -3404.156438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29709 -39.11557 -38.72146 -37.29761 -34.68339 -33.50745 -32.06780 -31.50535 -29.72881 -28.21540 -27.38962 -26.96375 -25.41448 -23.74207 -22.71515 -21.87836 -21.46939 -18.96465 -18.57736 -17.88552 -17.19244 -16.93361 -16.84336 -16.53019 -16.27207 -15.69974 -15.48509 -15.22909 -15.06848 -14.69204 -14.65151 -14.39385 -13.66720 -13.40566 -13.35252 -13.26328 -13.11127 -12.90149 -12.73143 -12.70552 -12.52096 -12.34779 -12.19666 -12.16264 -12.06142 -11.86686 -11.73070 -11.57638 -10.90280 -10.68491 -10.56855 -9.75505 -9.13886 -8.92941 -8.12860 -6.27283 0.37230 0.43364 1.42291 1.44474 1.52167 2.37178 2.41833 2.66848 2.72576 3.15380 3.72117 3.82434 3.95984 4.03897 4.17196 4.18186 4.24649 4.38517 4.44931 4.48515 4.49922 4.50884 4.52619 4.58908 4.74308 4.78546 4.83505 4.83866 4.87217 5.03509 5.08457 5.11101 5.21318 5.26298 5.33514 5.36577 5.47825 5.66107 5.74866 5.82526 5.86597 6.22620 6.30136 6.42856 6.47007 6.75596 6.97750 7.42855 8.92607 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003791 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.014718 B = 7384.361056 C = 8950.953952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.410 6.410 4 C 0.123 3.877 5 C -0.136 4.136 6 C -0.064 4.064 7 C -0.119 4.119 8 C 0.106 3.894 9 N -0.678 5.678 10 C 0.214 3.786 11 H -0.031 1.031 12 C -0.112 4.112 13 C -0.540 4.540 14 H 0.057 0.943 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.282 1.282 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.067 4.067 22 C -0.201 4.201 23 C 0.125 3.875 24 O -0.328 6.328 25 C 0.018 3.982 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.330 0.670 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.851 -17.885 -6.346 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.330 6.330 4 C 0.047 3.953 5 C -0.136 4.136 6 C -0.083 4.083 7 C -0.120 4.120 8 C -0.022 4.022 9 N -0.308 5.308 10 C 0.105 3.895 11 H -0.013 1.013 12 C -0.170 4.170 13 C -0.578 4.578 14 H 0.075 0.925 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.788 3.212 18 H -0.207 1.207 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.085 4.085 22 C -0.220 4.220 23 C 0.079 3.921 24 O -0.242 6.242 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.151 0.849 42 H 0.174 0.826 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.099 -17.327 -6.316 23.835 hybrid contribution -1.283 -0.117 0.436 1.360 sum 13.816 -17.445 -5.879 23.017 Atomic orbital electron populations 1.21781 0.93385 1.03381 1.02372 1.22650 0.95965 0.82606 1.01159 1.87870 1.21172 1.28329 1.95647 1.20908 0.80993 0.92132 1.01265 1.19103 0.90434 0.95764 1.08349 1.20669 0.99348 0.91293 0.96945 1.19782 0.94907 0.93631 1.03632 1.20764 0.94623 0.95947 0.90914 1.60747 1.45036 1.13515 1.11531 1.18958 0.86861 0.89320 0.94319 1.01324 1.21528 0.98803 0.99516 0.97162 1.21549 1.16131 1.16657 1.03471 0.92507 1.25729 0.97752 0.94731 1.00288 1.70018 1.29895 1.19335 1.36420 0.85544 0.78109 0.77860 0.79709 1.20700 1.19649 1.19621 1.20993 0.91440 1.00050 0.96037 1.21367 1.01218 0.91023 1.08350 1.18684 0.87822 0.88204 0.97375 1.86009 1.16407 1.33127 1.88650 1.23358 0.78628 1.03381 1.02296 0.92617 0.88726 0.92987 0.91971 0.92339 0.91157 0.91567 0.86026 0.96449 0.91069 0.85364 0.92377 0.95307 0.95763 0.92768 0.84900 0.82587 0.91606 0.91961 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 10.28 71.98 0.74 -2.04 16 2 C 0.05 1.01 6.66 71.98 0.48 1.48 16 3 O -0.41 -10.98 8.82 -148.98 -1.31 -12.29 16 4 C 0.12 3.01 5.80 71.24 0.41 3.42 16 5 C -0.14 -3.89 5.89 -19.77 -0.12 -4.00 16 6 C -0.06 -2.09 9.03 22.25 0.20 -1.89 16 7 C -0.12 -3.99 5.39 -19.85 -0.11 -4.10 16 8 C 0.11 4.15 5.61 85.56 0.48 4.63 16 9 N -0.68 -30.80 6.29 -499.46 -3.14 -33.94 16 10 C 0.21 11.40 2.60 44.17 0.11 11.51 16 11 H -0.03 -1.81 7.80 -2.38 -0.02 -1.82 16 12 C -0.11 -5.75 9.19 71.98 0.66 -5.09 16 13 C -0.54 -30.79 8.59 25.60 0.22 -30.57 16 14 H 0.06 3.19 7.62 -2.91 -0.02 3.17 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -53.96 11.32 21.45 0.24 -53.71 16 17 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C -0.07 -1.93 9.69 22.26 0.22 -1.71 16 22 C -0.20 -4.87 9.04 22.37 0.20 -4.67 16 23 C 0.12 3.18 6.66 22.51 0.15 3.33 16 24 O -0.33 -6.89 9.92 -92.38 -0.92 -7.81 16 25 C 0.02 0.21 9.81 113.37 1.11 1.33 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.12 4.24 7.00 -2.91 -0.02 4.22 16 34 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 35 H 0.07 2.72 7.38 -2.39 -0.02 2.70 16 36 H 0.33 15.11 8.21 -89.70 -0.74 14.37 16 37 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.02 1.10 7.45 -2.39 -0.02 1.08 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.16 2.73 6.30 -2.91 -0.02 2.71 16 43 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 44 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 45 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -65.96 367.57 2.34 -63.62 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.23 Total: 24.75 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 5.22 Total: -27.09 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.90 Total: -87.65 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -2.23 Total: -20.10 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.96 2.34 -63.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308506508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.448 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds