Wall clock time and date at job start Tue Mar 31 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47666 * 2 1 4 4 C 1.42897 * 114.00038 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46869 * 179.97438 * 4 3 2 6 6 C 1.38170 * 120.02911 * 0.31794 * 5 4 3 7 7 C 1.38249 * 120.05221 * 180.25236 * 6 5 4 8 8 C 1.50703 * 119.94092 * 179.72345 * 7 6 5 9 9 N 1.46899 * 109.47107 * 269.72410 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.50699 * 109.46851 * 204.99994 * 10 9 8 14 14 H 1.07998 * 120.00472 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99689 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00273 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47106 * 119.99879 * 17 15 13 20 20 H 1.48500 * 109.47397 * 240.00177 * 17 15 13 21 21 C 1.38284 * 120.11391 * 359.44624 * 7 6 5 22 22 C 1.38117 * 120.05552 * 0.25600 * 21 7 6 23 23 C 1.38708 * 120.02809 * 179.97438 * 5 4 3 24 24 O 1.35897 * 120.05662 * 0.02562 * 23 5 4 25 25 C 1.42906 * 117.00474 * 180.02562 * 24 23 5 26 26 H 1.09000 * 109.47179 * 300.00405 * 1 2 3 27 27 H 1.08999 * 109.46901 * 59.99633 * 1 2 3 28 28 H 1.08994 * 109.47371 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47179 * 239.99595 * 2 1 3 30 30 H 1.08999 * 109.46901 * 120.00367 * 2 1 3 31 31 H 1.09001 * 109.47374 * 59.99947 * 4 3 2 32 32 H 1.09005 * 109.46788 * 299.99494 * 4 3 2 33 33 H 1.07992 * 119.97459 * 359.97438 * 6 5 4 34 34 H 1.09002 * 109.47152 * 149.72498 * 8 7 6 35 35 H 1.09001 * 109.46980 * 29.72598 * 8 7 6 36 36 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 37 37 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 38 38 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 39 39 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 40 40 H 0.97006 * 119.99890 * 179.97438 * 16 15 13 41 41 H 1.08004 * 119.97476 * 180.27207 * 21 7 6 42 42 H 1.08004 * 120.02961 * 180.02562 * 22 21 7 43 43 H 1.08997 * 109.47127 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.46757 * 300.00337 * 25 24 23 45 45 H 1.09004 * 109.46563 * 59.99551 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 6 3.8196 2.9159 -0.0012 6 6 2.8422 3.8925 0.0056 7 6 3.1981 5.2284 -0.0002 8 6 2.1299 6.2914 0.0008 9 7 1.7817 6.6371 -1.3838 10 6 0.7404 7.6725 -1.4220 11 1 0.0519 7.5262 -0.5897 12 6 1.3899 9.0533 -1.3100 13 6 -0.0156 7.5769 -2.7222 14 1 0.2506 6.8222 -3.4474 15 6 -1.0471 8.4530 -2.9858 16 7 -1.3708 9.3724 -2.1029 17 14 -1.9847 8.3342 -4.5970 18 1 -1.4298 7.2235 -5.4119 19 1 -3.4194 8.0729 -4.3168 20 1 -1.8506 9.6111 -5.3432 21 6 4.5326 5.5908 -0.0012 22 6 5.5135 4.6184 -0.0017 23 6 5.1589 3.2769 -0.0013 24 8 6.1222 2.3183 -0.0013 25 6 7.4803 2.7631 -0.0009 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 3.8334 0.9765 -0.8908 32 1 3.8340 0.9762 0.8893 33 1 1.7993 3.6121 0.0108 34 1 2.5006 7.1785 0.5145 35 1 1.2450 5.9168 0.5153 36 1 2.5986 6.9261 -1.9008 37 1 2.0784 9.1995 -2.1423 38 1 0.6173 9.8217 -1.3388 39 1 1.9367 9.1224 -0.3696 40 1 -2.0963 9.9890 -2.2885 41 1 4.8082 6.6351 -0.0013 42 1 6.5557 4.9019 -0.0021 43 1 8.1454 1.8996 -0.0005 44 1 7.6657 3.3648 -0.8905 45 1 7.6653 3.3643 0.8894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308506520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:39 Heat of formation + Delta-G solvation = -83.998009 kcal Electronic energy + Delta-G solvation = -23303.370058 eV Core-core repulsion = 19899.260192 eV Total energy + Delta-G solvation = -3404.109866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29037 -39.10456 -38.73914 -37.35260 -34.67093 -33.49365 -32.07918 -31.49236 -29.65736 -28.15740 -27.25153 -26.95787 -25.40271 -23.73086 -22.73394 -22.15075 -21.52886 -18.96185 -18.42162 -17.86803 -17.17979 -16.97341 -16.74109 -16.52441 -16.24705 -15.86618 -15.32009 -15.29979 -14.92397 -14.65058 -14.59487 -14.26869 -13.69574 -13.61485 -13.35738 -13.17547 -13.13706 -12.92225 -12.79712 -12.67207 -12.56268 -12.33717 -12.22651 -12.14403 -12.01755 -11.85798 -11.68920 -11.65367 -11.01643 -10.67070 -10.48034 -9.73268 -9.09000 -8.85799 -8.08431 -6.19657 0.36609 0.45413 1.42123 1.43706 1.56640 2.37723 2.44985 2.68964 2.73355 3.19382 3.76755 3.79035 3.96665 4.05253 4.18504 4.20130 4.27480 4.40567 4.44940 4.47919 4.50112 4.51801 4.53063 4.54416 4.71083 4.78064 4.79750 4.84516 4.88924 4.90362 5.04987 5.09673 5.13916 5.28290 5.33550 5.37451 5.42109 5.70076 5.74773 5.82597 5.85988 6.28479 6.32705 6.44120 6.66218 6.83448 6.95824 7.50274 8.97017 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.003790 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.914219 B = 7385.835650 C = 8956.596551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.410 6.410 4 C 0.123 3.877 5 C -0.138 4.138 6 C -0.052 4.052 7 C -0.119 4.119 8 C 0.108 3.892 9 N -0.682 5.682 10 C 0.214 3.786 11 H 0.002 0.998 12 C -0.155 4.155 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.923 5.923 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.278 1.278 21 C -0.079 4.079 22 C -0.200 4.200 23 C 0.124 3.876 24 O -0.329 6.329 25 C 0.018 3.982 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.331 0.669 37 H 0.032 0.968 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.121 0.879 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.287 -16.627 6.522 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.330 6.330 4 C 0.047 3.953 5 C -0.138 4.138 6 C -0.071 4.071 7 C -0.120 4.120 8 C -0.021 4.021 9 N -0.312 5.312 10 C 0.106 3.894 11 H 0.020 0.980 12 C -0.214 4.214 13 C -0.553 4.553 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.563 5.563 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.204 1.204 21 C -0.097 4.097 22 C -0.219 4.219 23 C 0.079 3.921 24 O -0.243 6.243 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.154 0.846 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.567 -17.067 6.483 23.993 hybrid contribution -0.095 1.147 -0.442 1.233 sum 15.473 -15.920 6.041 23.008 Atomic orbital electron populations 1.21779 0.93412 1.03358 1.02373 1.22647 0.95974 0.82620 1.01130 1.87890 1.21180 1.28314 1.95632 1.20911 0.81012 0.92209 1.01202 1.19147 0.90514 0.95803 1.08368 1.20639 0.99254 0.91342 0.95838 1.19801 0.94492 0.94111 1.03587 1.20720 0.95649 0.94841 0.90920 1.60701 1.13154 1.45684 1.11633 1.18974 0.88942 0.86060 0.95449 0.98040 1.22226 0.99690 1.02327 0.97203 1.21474 1.15705 1.14921 1.03162 0.93007 1.25710 0.97980 0.95013 1.00217 1.70018 1.30276 1.19692 1.36317 0.85469 0.78212 0.77919 0.79778 1.19509 1.20692 1.20364 1.21035 0.91408 1.00150 0.97119 1.21341 1.01212 0.90957 1.08362 1.18687 0.87748 0.88285 0.97408 1.86015 1.16416 1.33166 1.88658 1.23360 0.78617 1.03374 1.02301 0.92571 0.93107 0.88678 0.92411 0.91898 0.91680 0.91105 0.86231 0.94932 0.92528 0.85188 0.94849 0.91894 0.95443 0.92990 0.84615 0.82490 0.86087 0.91898 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 10.28 71.98 0.74 -2.20 16 2 C 0.05 1.06 6.66 71.98 0.48 1.54 16 3 O -0.41 -11.50 8.82 -148.98 -1.31 -12.81 16 4 C 0.12 3.11 5.80 71.24 0.41 3.52 16 5 C -0.14 -4.02 5.89 -19.77 -0.12 -4.14 16 6 C -0.05 -1.75 9.02 22.26 0.20 -1.55 16 7 C -0.12 -3.97 5.39 -19.85 -0.11 -4.08 16 8 C 0.11 4.14 5.61 85.56 0.48 4.62 16 9 N -0.68 -30.60 6.22 -499.46 -3.11 -33.71 16 10 C 0.21 11.27 2.57 44.17 0.11 11.39 16 11 H 0.00 0.10 7.80 -2.39 -0.02 0.08 16 12 C -0.15 -7.61 8.94 71.98 0.64 -6.96 16 13 C -0.51 -29.66 8.84 25.60 0.23 -29.43 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.50 5.30 84.65 0.45 0.95 16 16 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 17 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 C -0.08 -2.16 9.69 22.25 0.22 -1.94 16 22 C -0.20 -4.68 9.04 22.37 0.20 -4.48 16 23 C 0.12 3.16 6.66 22.51 0.15 3.31 16 24 O -0.33 -6.90 9.92 -92.39 -0.92 -7.82 16 25 C 0.02 0.21 9.81 113.37 1.11 1.32 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.12 4.44 7.00 -2.91 -0.02 4.42 16 34 H 0.03 1.19 7.38 -2.39 -0.02 1.18 16 35 H 0.06 2.31 8.00 -2.39 -0.02 2.29 16 36 H 0.33 14.02 8.47 -89.69 -0.76 13.26 16 37 H 0.03 1.55 8.13 -2.38 -0.02 1.53 16 38 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 39 H 0.03 1.17 7.45 -2.38 -0.02 1.16 16 40 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 41 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.16 2.58 6.30 -2.91 -0.02 2.57 16 43 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 45 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 Total: -1.00 -66.98 367.90 2.34 -64.64 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.21 Total: 24.67 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 5.20 Total: -28.14 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -2.86 Total: -87.74 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -2.23 Total: -20.63 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.98 2.34 -64.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308506520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.359 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds