Wall clock time and date at job start Tue Mar 31 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47119 * 269.99823 * 3 2 1 5 5 H 1.48503 * 109.47456 * 29.99929 * 3 2 1 6 6 H 1.48501 * 109.47182 * 150.00304 * 3 2 1 7 7 C 1.38806 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00202 * 163.07201 * 7 2 1 9 9 N 1.36945 * 119.99772 * 343.06937 * 7 2 1 10 10 C 1.46927 * 120.63224 * 331.85218 * 9 7 2 11 11 C 1.53189 * 108.77608 * 233.58422 * 10 9 7 12 12 C 1.53043 * 109.31192 * 305.36659 * 11 10 9 13 13 N 1.46500 * 109.45940 * 181.38288 * 12 11 10 14 14 C 1.34772 * 119.99808 * 154.97009 * 13 12 11 15 15 O 1.21591 * 120.00425 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00083 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00246 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47260 * 180.02562 * 17 16 14 19 19 C 1.31001 * 119.99711 * 125.00147 * 18 17 16 20 20 C 1.50704 * 119.99350 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49270 * 188.61752 * 20 19 18 22 22 C 1.52997 * 60.00248 * 252.51229 * 21 20 19 23 23 C 1.53041 * 109.52868 * 61.36982 * 12 11 10 24 24 C 1.46924 * 120.62762 * 151.82506 * 9 7 2 25 25 H 0.97006 * 120.00243 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.58904 * 113.79842 * 10 9 7 27 27 H 1.09004 * 109.70212 * 353.44311 * 10 9 7 28 28 H 1.08993 * 109.50041 * 185.41491 * 11 10 9 29 29 H 1.09006 * 109.49945 * 65.31011 * 11 10 9 30 30 H 1.08998 * 109.46217 * 301.35430 * 12 11 10 31 31 H 0.97000 * 119.99991 * 334.97411 * 13 12 11 32 32 H 0.97007 * 120.00110 * 0.02562 * 16 14 13 33 33 H 1.08999 * 109.47375 * 60.00179 * 17 16 14 34 34 H 1.08998 * 109.47613 * 299.99958 * 17 16 14 35 35 H 1.07994 * 119.99795 * 304.99802 * 18 17 16 36 36 H 1.07997 * 119.99997 * 359.72038 * 19 18 17 37 37 H 1.08993 * 115.55338 * 334.32937 * 20 19 18 38 38 H 1.08998 * 117.50614 * 0.02562 * 21 20 19 39 39 H 1.09003 * 117.49655 * 145.02169 * 21 20 19 40 40 H 1.09003 * 117.49849 * 252.51306 * 22 21 20 41 41 H 1.08997 * 117.51643 * 107.48312 * 22 21 20 42 42 H 1.09005 * 109.49935 * 58.58213 * 23 12 11 43 43 H 1.09001 * 109.49800 * 178.67931 * 23 12 11 44 44 H 1.08998 * 109.58869 * 246.19981 * 24 9 7 45 45 H 1.09002 * 109.58822 * 6.48607 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3701 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2660 11 6 0.4973 -3.3209 2.4117 12 6 0.8120 -4.7021 1.8326 13 7 1.0396 -5.6497 2.9264 14 6 0.8357 -6.9673 2.7299 15 8 0.4632 -7.3697 1.6446 16 7 1.0446 -7.8391 3.7363 17 6 0.8235 -9.2714 3.5225 18 6 1.1251 -10.0216 4.7943 19 6 0.2211 -10.8112 5.3191 20 6 0.5227 -11.5609 6.5911 21 6 -0.4875 -12.6165 7.0453 22 6 -0.3751 -11.2905 7.8002 23 6 2.0675 -4.6177 0.9616 24 6 1.8138 -3.6527 -0.2008 25 1 -0.4851 0.8401 0.0004 26 1 -0.6771 -2.6411 0.7346 27 1 0.0966 -1.3359 1.6676 28 1 -0.3832 -3.3863 3.0507 29 1 1.3472 -2.9698 2.9972 30 1 -0.0281 -5.0418 1.2268 31 1 1.3370 -5.3287 3.7921 32 1 1.3413 -7.5181 4.6023 33 1 1.4792 -9.6255 2.7271 34 1 -0.2154 -9.4404 3.2392 35 1 2.0866 -9.9083 5.2729 36 1 -0.7419 -10.9210 4.8428 37 1 1.5775 -11.7584 6.7817 38 1 -1.3699 -12.7690 6.4239 39 1 -0.0973 -13.5089 7.5346 40 1 0.0891 -11.3105 8.7862 41 1 -1.1835 -10.5700 7.6757 42 1 2.9023 -4.2543 1.5609 43 1 2.3046 -5.6063 0.5683 44 1 1.0402 -4.0599 -0.8518 45 1 2.7332 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326667251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:48 Heat of formation + Delta-G solvation = 25.587043 kcal Electronic energy + Delta-G solvation = -22816.929334 eV Core-core repulsion = 19449.864184 eV Total energy + Delta-G solvation = -3367.065151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91933 -38.19779 -37.47100 -35.50401 -34.28579 -32.76658 -31.81210 -30.06087 -29.30388 -26.64908 -24.77084 -22.81553 -22.35632 -22.09806 -21.62093 -20.67709 -20.02874 -19.35898 -18.03458 -16.81622 -16.41092 -15.99593 -15.31302 -15.15065 -14.83310 -14.33349 -14.13988 -13.81977 -13.57766 -13.46713 -13.08574 -12.94077 -12.67833 -12.32553 -12.25945 -12.02161 -11.66962 -11.41784 -11.34013 -11.09137 -10.81897 -10.78300 -10.68664 -10.46554 -10.23978 -10.04117 -10.00114 -9.72756 -9.51426 -9.37569 -9.03557 -8.55263 -8.40206 -6.65268 -5.77373 -3.19231 1.59045 2.96793 3.38566 3.42277 3.45457 3.47791 3.52736 4.11921 4.44661 4.46919 4.51425 4.56191 4.68495 4.81028 5.04715 5.19831 5.36967 5.37918 5.44044 5.45946 5.53964 5.57872 5.66185 5.66368 5.71852 5.94558 6.12701 6.22332 6.28922 6.33512 6.40543 6.51429 6.54388 6.62273 6.65787 6.84634 6.95795 7.03294 7.16619 7.35239 7.64928 7.81421 8.20159 8.47066 8.80653 9.23185 9.86618 10.43942 11.31592 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.042690 B = 0.002247 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.739805 B =12455.930271 C =12694.855014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.701 3.299 15 O -0.592 6.592 16 N -0.750 5.750 17 C 0.170 3.830 18 C -0.170 4.170 19 C -0.107 4.107 20 C -0.131 4.131 21 C -0.176 4.176 22 C -0.171 4.171 23 C -0.139 4.139 24 C 0.147 3.853 25 H 0.254 0.746 26 H 0.021 0.979 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.391 0.609 32 H 0.395 0.605 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -20.766 15.537 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.470 6.470 16 N -0.407 5.407 17 C 0.046 3.954 18 C -0.188 4.188 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.213 4.213 22 C -0.208 4.208 23 C -0.180 4.180 24 C 0.020 3.980 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.224 0.776 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.513 -20.974 14.475 25.489 hybrid contribution 0.750 1.083 0.887 1.588 sum 1.263 -19.891 15.363 25.165 Atomic orbital electron populations 1.70027 1.05242 1.25486 1.54043 1.25053 0.95292 0.98413 1.00993 0.86307 0.79121 0.83678 0.77723 1.21403 1.21597 1.20537 1.19179 0.92560 0.84764 1.41538 0.91695 1.44095 1.35817 1.01676 1.49972 1.20738 0.88922 0.97857 0.87694 1.22543 1.00459 0.94788 1.00814 1.20906 0.98323 0.87491 0.86793 1.45542 1.72711 1.04917 1.16085 1.16031 0.78571 0.81304 0.84036 1.90921 1.53605 1.78049 1.24409 1.45122 1.74826 1.06495 1.14209 1.20092 1.01494 0.78705 0.95061 1.22828 0.99863 0.98831 0.97282 1.22310 0.98870 0.96849 0.94557 1.21254 0.97170 1.02469 0.94017 1.22986 1.01277 0.93111 1.03898 1.22970 1.02516 0.99667 0.95666 1.22391 0.97268 0.99475 0.98834 1.20881 0.97872 0.86510 0.92700 0.93630 0.96095 0.89055 0.92796 0.92249 0.90105 0.77647 0.77216 0.90863 0.91454 0.86681 0.86820 0.87284 0.88510 0.88581 0.88502 0.88491 0.92484 0.92715 0.96165 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.19 55.49 0.62 -25.60 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -15.00 2.99 -172.32 -0.52 -15.51 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 12 C 0.17 3.04 2.42 -67.89 -0.16 2.87 16 13 N -0.74 -10.78 5.08 -58.63 -0.30 -11.07 16 14 C 0.70 10.84 8.53 -86.92 -0.74 10.10 16 15 O -0.59 -11.77 16.01 5.29 0.08 -11.69 16 16 N -0.75 -8.31 5.55 -66.41 -0.37 -8.68 16 17 C 0.17 1.72 6.11 -5.19 -0.03 1.69 16 18 C -0.17 -1.26 9.27 -36.02 -0.33 -1.60 16 19 C -0.11 -0.76 9.27 -36.02 -0.33 -1.09 16 20 C -0.13 -0.81 5.99 -91.77 -0.55 -1.36 16 21 C -0.18 -0.96 10.23 -26.73 -0.27 -1.24 16 22 C -0.17 -0.97 10.23 -26.73 -0.27 -1.24 16 23 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 24 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 25 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 31 H 0.39 4.52 8.62 -40.82 -0.35 4.17 16 32 H 0.39 3.25 8.48 -40.82 -0.35 2.91 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.12 0.75 8.05 -52.49 -0.42 0.32 16 36 H 0.11 0.80 7.84 -52.49 -0.41 0.39 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -32.27 367.54 -10.92 -43.19 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.68 Total: 4.50 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -3.27 Total: 2.71 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.56 Total: -60.87 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.27 -10.92 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326667251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.780 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds