Wall clock time and date at job start Tue Mar 31 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47119 * 269.99823 * 3 2 1 5 5 H 1.48503 * 109.47456 * 29.99929 * 3 2 1 6 6 H 1.48501 * 109.47182 * 150.00304 * 3 2 1 7 7 C 1.38806 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00202 * 163.07201 * 7 2 1 9 9 N 1.36945 * 119.99772 * 343.06937 * 7 2 1 10 10 C 1.46927 * 120.63224 * 331.85218 * 9 7 2 11 11 C 1.53189 * 108.77608 * 233.58422 * 10 9 7 12 12 C 1.53043 * 109.31192 * 305.36659 * 11 10 9 13 13 N 1.46500 * 109.45940 * 181.38288 * 12 11 10 14 14 C 1.34772 * 119.99808 * 154.97009 * 13 12 11 15 15 O 1.21591 * 120.00425 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00083 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00246 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47260 * 180.02562 * 17 16 14 19 19 C 1.31001 * 119.99711 * 125.00147 * 18 17 16 20 20 C 1.50704 * 119.99350 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49270 * 188.61752 * 20 19 18 22 22 C 1.52997 * 60.00248 * 252.51229 * 21 20 19 23 23 C 1.53041 * 109.52868 * 61.36982 * 12 11 10 24 24 C 1.46924 * 120.62762 * 151.82506 * 9 7 2 25 25 H 0.97006 * 120.00243 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.58904 * 113.79842 * 10 9 7 27 27 H 1.09004 * 109.70212 * 353.44311 * 10 9 7 28 28 H 1.08993 * 109.50041 * 185.41491 * 11 10 9 29 29 H 1.09006 * 109.49945 * 65.31011 * 11 10 9 30 30 H 1.08998 * 109.46217 * 301.35430 * 12 11 10 31 31 H 0.97000 * 119.99991 * 334.97411 * 13 12 11 32 32 H 0.97007 * 120.00110 * 0.02562 * 16 14 13 33 33 H 1.08999 * 109.47375 * 60.00179 * 17 16 14 34 34 H 1.08998 * 109.47613 * 299.99958 * 17 16 14 35 35 H 1.07994 * 119.99795 * 304.99802 * 18 17 16 36 36 H 1.07997 * 119.99997 * 359.72038 * 19 18 17 37 37 H 1.08993 * 115.55338 * 334.32937 * 20 19 18 38 38 H 1.08998 * 117.50614 * 0.02562 * 21 20 19 39 39 H 1.09003 * 117.49655 * 145.02169 * 21 20 19 40 40 H 1.09003 * 117.49849 * 252.51306 * 22 21 20 41 41 H 1.08997 * 117.51643 * 107.48312 * 22 21 20 42 42 H 1.09005 * 109.49935 * 58.58213 * 23 12 11 43 43 H 1.09001 * 109.49800 * 178.67931 * 23 12 11 44 44 H 1.08998 * 109.58869 * 246.19981 * 24 9 7 45 45 H 1.09002 * 109.58822 * 6.48607 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2729 9 7 1.3701 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2660 11 6 0.4973 -3.3209 2.4117 12 6 0.8120 -4.7021 1.8326 13 7 1.0396 -5.6497 2.9264 14 6 0.8357 -6.9673 2.7299 15 8 0.4632 -7.3697 1.6446 16 7 1.0446 -7.8391 3.7363 17 6 0.8235 -9.2714 3.5225 18 6 1.1251 -10.0216 4.7943 19 6 0.2211 -10.8112 5.3191 20 6 0.5227 -11.5609 6.5911 21 6 -0.4875 -12.6165 7.0453 22 6 -0.3751 -11.2905 7.8002 23 6 2.0675 -4.6177 0.9616 24 6 1.8138 -3.6527 -0.2008 25 1 -0.4851 0.8401 0.0004 26 1 -0.6771 -2.6411 0.7346 27 1 0.0966 -1.3359 1.6676 28 1 -0.3832 -3.3863 3.0507 29 1 1.3472 -2.9698 2.9972 30 1 -0.0281 -5.0418 1.2268 31 1 1.3370 -5.3287 3.7921 32 1 1.3413 -7.5181 4.6023 33 1 1.4792 -9.6255 2.7271 34 1 -0.2154 -9.4404 3.2392 35 1 2.0866 -9.9083 5.2729 36 1 -0.7419 -10.9210 4.8428 37 1 1.5775 -11.7584 6.7817 38 1 -1.3699 -12.7690 6.4239 39 1 -0.0973 -13.5089 7.5346 40 1 0.0891 -11.3105 8.7862 41 1 -1.1835 -10.5700 7.6757 42 1 2.9023 -4.2543 1.5609 43 1 2.3046 -5.6063 0.5683 44 1 1.0402 -4.0599 -0.8518 45 1 2.7332 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326667251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:47 Heat of formation + Delta-G solvation = 5.299178 kcal Electronic energy + Delta-G solvation = -22817.809082 eV Core-core repulsion = 19449.864184 eV Total energy + Delta-G solvation = -3367.944898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18133 -39.18609 -38.59563 -36.51723 -35.85562 -34.07824 -33.19290 -31.73296 -31.03213 -27.68819 -26.51244 -23.98120 -23.66058 -23.21930 -22.43057 -21.86964 -21.06437 -20.64698 -19.32053 -18.59005 -17.53533 -16.89635 -16.69878 -16.31508 -15.90203 -15.82935 -15.36966 -15.26137 -15.09119 -14.77233 -14.60406 -14.14092 -14.03142 -13.72825 -13.20796 -13.04068 -12.99746 -12.60341 -12.50442 -12.42725 -12.22724 -12.18939 -12.01246 -11.87460 -11.86111 -11.55880 -11.41538 -11.26990 -11.16985 -10.55212 -10.35743 -9.88880 -9.64473 -8.69906 -7.87020 -5.32690 0.96903 1.49037 1.49992 1.60275 1.88834 2.18579 2.52815 3.07003 3.27795 3.39977 3.59362 3.67861 3.91623 4.03656 4.07360 4.08228 4.17039 4.26426 4.35828 4.44773 4.47517 4.65408 4.66349 4.75953 4.81138 4.83088 4.87673 5.03496 5.05055 5.07991 5.17170 5.24840 5.26827 5.30658 5.44200 5.48224 5.61513 5.65452 5.66661 5.71211 5.79954 6.07207 6.39846 7.15168 7.15700 7.62641 7.84648 8.37971 9.20208 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.042690 B = 0.002247 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.739805 B =12455.930271 C =12694.855014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.639 6.639 16 N -0.730 5.730 17 C 0.171 3.829 18 C -0.168 4.168 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.176 4.176 22 C -0.171 4.171 23 C -0.123 4.123 24 C 0.144 3.856 25 H 0.251 0.749 26 H -0.006 1.006 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.410 0.590 32 H 0.412 0.588 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -21.649 17.822 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.520 6.520 16 N -0.386 5.386 17 C 0.047 3.953 18 C -0.187 4.187 19 C -0.121 4.121 20 C -0.157 4.157 21 C -0.213 4.213 22 C -0.208 4.208 23 C -0.164 4.164 24 C 0.018 3.982 25 H 0.060 0.940 26 H 0.012 0.988 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.249 0.751 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.897 -21.891 16.834 27.680 hybrid contribution 0.281 1.262 0.149 1.302 sum 2.179 -20.629 16.982 26.808 Atomic orbital electron populations 1.70188 1.06705 1.25958 1.55332 1.25834 0.96065 1.01579 1.01144 0.85249 0.78117 0.79384 0.77494 1.21382 1.21754 1.19342 1.19514 0.92879 0.85812 1.41121 0.91479 1.44350 1.35949 1.02183 1.50738 1.20571 0.87709 0.97766 0.88774 1.22254 1.01967 0.93547 0.98907 1.20487 0.96901 0.87736 0.87336 1.45121 1.72617 1.04277 1.16045 1.16188 0.78268 0.81660 0.84119 1.90898 1.55673 1.78823 1.26648 1.44958 1.73362 1.06394 1.13935 1.20118 1.00642 0.78160 0.96379 1.22656 1.00723 0.98995 0.96305 1.22422 0.98606 0.96338 0.94745 1.21299 0.97822 1.02928 0.93670 1.23072 1.01025 0.93440 1.03754 1.23031 1.02226 0.99642 0.95915 1.22183 0.97937 0.98468 0.97778 1.20968 0.97337 0.85989 0.93894 0.94011 0.98811 0.91742 0.90532 0.91008 0.92779 0.75374 0.75143 0.91867 0.92592 0.85128 0.87127 0.86488 0.88591 0.87567 0.87488 0.88863 0.91487 0.92458 0.97604 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.49 11.19 21.65 0.24 -55.25 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.26 -14.56 9.58 84.03 0.81 -13.75 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.61 -31.14 2.99 -699.10 -2.09 -33.23 16 10 C 0.18 8.60 5.30 86.36 0.46 9.06 16 11 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 12 C 0.18 6.33 2.42 45.02 0.11 6.44 16 13 N -0.73 -19.63 5.08 -457.68 -2.33 -21.95 16 14 C 0.70 20.62 8.53 179.06 1.53 22.15 16 15 O -0.64 -25.31 16.01 -4.00 -0.06 -25.38 16 16 N -0.73 -14.71 5.55 -482.29 -2.68 -17.39 16 17 C 0.17 3.24 6.11 85.64 0.52 3.76 16 18 C -0.17 -2.17 9.27 25.65 0.24 -1.93 16 19 C -0.10 -1.27 9.27 25.65 0.24 -1.03 16 20 C -0.14 -1.43 5.99 -11.54 -0.07 -1.50 16 21 C -0.18 -1.60 10.23 30.59 0.31 -1.28 16 22 C -0.17 -1.59 10.23 30.59 0.31 -1.28 16 23 C -0.12 -4.55 5.65 30.67 0.17 -4.37 16 24 C 0.14 6.41 6.52 86.36 0.56 6.97 16 25 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 26 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 31 H 0.41 8.11 8.62 -92.71 -0.80 7.31 16 32 H 0.41 5.53 8.48 -92.70 -0.79 4.75 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.20 7.79 -2.39 -0.02 1.18 16 35 H 0.13 1.31 8.05 -2.91 -0.02 1.29 16 36 H 0.11 1.43 7.84 -2.91 -0.02 1.40 16 37 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 Total: -1.00 -70.56 367.54 0.28 -70.28 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.61 Total: 19.83 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.78 Total: 16.41 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -6.85 Total: -127.82 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.56 0.28 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326667251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.580 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds