Wall clock time and date at job start Tue Mar 31 2020 06:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47173 * 268.70921 * 3 2 1 5 5 H 1.48499 * 109.47079 * 28.70716 * 3 2 1 6 6 H 1.48500 * 109.46926 * 148.70402 * 3 2 1 7 7 C 1.38811 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00441 * 343.06162 * 7 2 1 9 9 N 1.36935 * 119.99733 * 163.05627 * 7 2 1 10 10 C 1.46925 * 120.63306 * 328.65792 * 9 7 2 11 11 C 1.53190 * 108.77796 * 233.58477 * 10 9 7 12 12 C 1.53045 * 109.31269 * 305.36598 * 11 10 9 13 13 N 1.46499 * 109.45992 * 181.38109 * 12 11 10 14 14 C 1.34781 * 119.99999 * 154.96789 * 13 12 11 15 15 O 1.21588 * 119.99596 * 0.02562 * 14 13 12 16 16 N 1.34767 * 120.00191 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00187 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47354 * 180.02562 * 17 16 14 19 19 C 1.31005 * 119.99758 * 236.08949 * 18 17 16 20 20 C 1.50697 * 120.00117 * 354.14659 * 19 18 17 21 21 C 1.53002 * 117.49743 * 182.37747 * 20 19 18 22 22 C 1.52995 * 117.50078 * 113.71652 * 20 19 18 23 23 C 1.53040 * 109.52509 * 61.36887 * 12 11 10 24 24 C 1.46932 * 120.62978 * 148.63519 * 9 7 2 25 25 H 0.97004 * 119.99625 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.58889 * 113.80003 * 10 9 7 27 27 H 1.08995 * 109.70522 * 353.44430 * 10 9 7 28 28 H 1.08997 * 109.50451 * 185.41046 * 11 10 9 29 29 H 1.09003 * 109.52249 * 65.33190 * 11 10 9 30 30 H 1.08999 * 109.45847 * 301.35561 * 12 11 10 31 31 H 0.96996 * 120.00508 * 334.97453 * 13 12 11 32 32 H 0.97002 * 120.00049 * 0.02562 * 16 14 13 33 33 H 1.09002 * 109.47599 * 60.00214 * 17 16 14 34 34 H 1.09001 * 109.46858 * 299.99515 * 17 16 14 35 35 H 1.08001 * 120.00240 * 56.08915 * 18 17 16 36 36 H 1.08001 * 119.99642 * 173.86960 * 19 18 17 37 37 H 1.09000 * 115.55041 * 328.04597 * 20 19 18 38 38 H 1.08998 * 117.49750 * 359.97438 * 21 20 19 39 39 H 1.09001 * 117.49461 * 145.02160 * 21 20 19 40 40 H 1.09005 * 117.50205 * 214.97803 * 22 20 19 41 41 H 1.09004 * 117.49917 * 359.97438 * 22 20 19 42 42 H 1.09001 * 109.49756 * 58.58152 * 23 12 11 43 43 H 1.09005 * 109.49505 * 178.67809 * 23 12 11 44 44 H 1.09003 * 109.58654 * 246.20328 * 24 9 7 45 45 H 1.08997 * 109.58299 * 6.48482 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5251 2.0306 -1.3996 5 1 1.4344 2.6604 0.6725 6 1 3.5339 1.4481 0.7273 7 6 2.0102 -1.2022 -0.0005 8 1 1.5054 -2.1173 0.2715 9 7 3.3350 -1.2278 -0.3462 10 6 3.8730 -0.2692 -1.3210 11 6 4.5947 -1.0442 -2.4280 12 6 5.6478 -1.9604 -1.8004 13 7 6.3626 -2.6788 -2.8583 14 6 7.6127 -3.1324 -2.6389 15 8 8.1469 -2.9458 -1.5627 16 7 8.2704 -3.7928 -3.6122 17 6 9.6289 -4.2863 -3.3735 18 6 10.1351 -4.9826 -4.6105 19 6 10.5511 -6.2229 -4.5401 20 6 10.6482 -6.9103 -3.2026 21 6 11.1936 -8.3397 -3.1809 22 6 9.7033 -8.0849 -2.9418 23 6 4.9628 -2.9673 -0.8735 24 6 4.2456 -2.2141 0.2512 25 1 -0.4850 0.8401 0.0004 26 1 4.5763 0.4001 -0.8256 27 1 3.0583 0.3117 -1.7533 28 1 5.0805 -0.3426 -3.1061 29 1 3.8733 -1.6450 -2.9818 30 1 6.3548 -1.3613 -1.2266 31 1 5.9363 -2.8279 -3.7167 32 1 7.8444 -3.9413 -4.4709 33 1 9.6194 -4.9880 -2.5395 34 1 10.2835 -3.4478 -3.1356 35 1 10.1548 -4.4592 -5.5550 36 1 10.8203 -6.7540 -5.4411 37 1 10.8938 -6.2651 -2.3591 38 1 11.4817 -8.7829 -4.1341 39 1 11.7976 -8.6348 -2.3229 40 1 9.3274 -8.2128 -1.9266 41 1 9.0110 -8.3603 -3.7375 42 1 4.2376 -3.5498 -1.4416 43 1 5.7107 -3.6345 -0.4450 44 1 4.9792 -1.7033 0.8750 45 1 3.6753 -2.9168 0.8587 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326667274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:49 Heat of formation + Delta-G solvation = 11.712045 kcal Electronic energy + Delta-G solvation = -23295.379947 eV Core-core repulsion = 19927.713131 eV Total energy + Delta-G solvation = -3367.666816 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21468 -39.42767 -38.77253 -36.40302 -35.85574 -34.15531 -33.29902 -31.96839 -31.51036 -27.53533 -26.27212 -24.48014 -23.65001 -23.46014 -23.22031 -21.86710 -21.20171 -20.06127 -19.18631 -18.54771 -17.65119 -17.09813 -16.90606 -16.27306 -15.99911 -15.93319 -15.60109 -15.36001 -15.15419 -14.71609 -14.63557 -14.45224 -14.23662 -13.79814 -13.72296 -13.44757 -13.21524 -12.59627 -12.53203 -12.42863 -12.26379 -12.04811 -12.00846 -11.78849 -11.70780 -11.56691 -11.41620 -11.29488 -11.22131 -10.70565 -10.32312 -9.90722 -9.64448 -8.90489 -8.16061 -5.53620 0.96147 1.30100 1.43202 1.52387 1.90296 2.18809 2.41957 3.03674 3.08829 3.28494 3.42838 3.67348 3.79584 3.98133 4.00304 4.02377 4.12173 4.24728 4.33129 4.33646 4.38855 4.49596 4.64168 4.64382 4.72707 4.78402 4.86515 4.92353 4.95440 5.01310 5.04795 5.08413 5.17238 5.24176 5.26292 5.40486 5.47754 5.57007 5.60144 5.83890 5.89926 6.06660 6.14452 6.91910 7.15284 7.60567 7.62635 8.03050 9.03863 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.002718 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.550439 B =10300.739881 C =10675.331857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.032 4.032 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.311 1.311 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.050 0.950 9 N -0.620 5.620 10 C 0.120 3.880 11 C -0.125 4.125 12 C 0.179 3.821 13 N -0.727 5.727 14 C 0.699 3.301 15 O -0.637 6.637 16 N -0.728 5.728 17 C 0.163 3.837 18 C -0.175 4.175 19 C -0.096 4.096 20 C -0.152 4.152 21 C -0.164 4.164 22 C -0.178 4.178 23 C -0.127 4.127 24 C 0.147 3.853 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.410 0.590 32 H 0.411 0.589 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.116 -12.874 -14.497 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.227 4.227 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.240 1.240 6 H -0.192 1.192 7 C -0.379 4.379 8 H 0.068 0.932 9 N -0.344 5.344 10 C -0.006 4.006 11 C -0.165 4.165 12 C 0.073 3.927 13 N -0.381 5.381 14 C 0.399 3.601 15 O -0.519 6.519 16 N -0.384 5.384 17 C 0.040 3.960 18 C -0.193 4.193 19 C -0.115 4.115 20 C -0.170 4.170 21 C -0.201 4.201 22 C -0.215 4.215 23 C -0.168 4.168 24 C 0.022 3.978 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.246 0.754 32 H 0.248 0.752 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.485 -12.628 -13.513 29.893 hybrid contribution -0.604 0.768 -0.186 0.994 sum 22.881 -11.860 -13.699 29.186 Atomic orbital electron populations 1.69935 1.07372 1.27288 1.55775 1.26007 0.95889 1.01029 0.99777 0.85903 0.78175 0.79901 0.78308 1.18999 1.23975 1.19240 1.18829 0.84941 0.93125 1.41008 0.93190 1.44493 1.05587 1.37845 1.46517 1.21412 0.96559 0.92278 0.90321 1.22148 0.97265 0.98911 0.98175 1.20506 0.92201 0.92078 0.87895 1.45081 1.14208 1.60766 1.18088 1.16155 0.81368 0.78651 0.83962 1.90895 1.69369 1.64927 1.26686 1.44911 1.16939 1.60307 1.16271 1.20194 0.81376 0.97501 0.96961 1.22774 1.02037 0.96013 0.98471 1.22478 0.97916 0.94548 0.96528 1.21400 1.06585 0.91341 0.97674 1.23083 0.95980 0.96864 1.04203 1.22992 0.93768 1.01710 1.02982 1.22207 0.98766 0.98086 0.97709 1.21009 0.91759 0.91165 0.93912 0.92866 0.95163 0.92116 0.89205 0.90755 0.91642 0.75359 0.75218 0.92123 0.92485 0.84337 0.84582 0.88062 0.87293 0.88197 0.89152 0.88177 0.91899 0.92066 0.95471 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.18 13.97 21.65 0.30 -59.88 16 2 C -0.03 -1.88 5.27 84.86 0.45 -1.43 16 3 Si 0.95 46.61 24.32 68.60 1.67 48.28 16 4 H -0.26 -11.89 6.51 99.48 0.65 -11.24 16 5 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 6 H -0.27 -12.89 6.76 99.48 0.67 -12.22 16 7 C -0.25 -14.24 10.03 84.03 0.84 -13.40 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.62 -29.43 2.72 -699.11 -1.90 -31.34 16 10 C 0.12 4.96 4.19 86.36 0.36 5.32 16 11 C -0.13 -3.92 5.55 30.67 0.17 -3.75 16 12 C 0.18 5.56 2.42 45.02 0.11 5.67 16 13 N -0.73 -17.66 5.08 -457.68 -2.33 -19.99 16 14 C 0.70 19.06 8.53 179.06 1.53 20.59 16 15 O -0.64 -23.58 16.01 -3.99 -0.06 -23.65 16 16 N -0.73 -13.59 5.55 -482.31 -2.68 -16.27 16 17 C 0.16 2.95 5.84 85.63 0.50 3.45 16 18 C -0.17 -2.00 9.63 25.64 0.25 -1.75 16 19 C -0.10 -1.04 9.66 25.64 0.25 -0.79 16 20 C -0.15 -2.02 4.84 -11.54 -0.06 -2.08 16 21 C -0.16 -1.74 10.24 30.62 0.31 -1.42 16 22 C -0.18 -2.33 10.24 30.62 0.31 -2.02 16 23 C -0.13 -4.36 5.65 30.67 0.17 -4.19 16 24 C 0.15 6.03 6.52 86.36 0.56 6.59 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.03 1.25 7.05 -2.39 -0.02 1.23 16 27 H 0.06 2.72 4.67 -2.39 -0.01 2.71 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 31 H 0.41 7.16 8.62 -92.71 -0.80 6.36 16 32 H 0.41 4.94 8.48 -92.71 -0.79 4.15 16 33 H 0.06 1.29 5.67 -2.39 -0.01 1.28 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 36 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.10 1.60 6.81 -2.39 -0.02 1.58 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -73.26 357.33 0.07 -73.18 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.69 Total: 18.86 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.76 Total: 10.79 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -6.61 Total: -127.47 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.67 Total: 48.28 kcal Total: -73.26 0.07 -73.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326667274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.897 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds