Wall clock time and date at job start Tue Mar 31 2020 07:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53122 * 109.52603 * 2 1 4 4 C 1.53035 * 109.27765 * 182.37346 * 3 2 1 5 5 N 1.46849 * 109.51995 * 59.18645 * 4 3 2 6 6 C 1.46903 * 110.99923 * 174.15876 * 5 4 3 7 7 C 1.52995 * 109.47332 * 169.99477 * 6 5 4 8 8 C 1.50700 * 109.47477 * 179.97438 * 7 6 5 9 9 N 1.30274 * 126.28218 * 89.97603 * 8 7 6 10 10 N 1.28669 * 109.37957 * 180.02562 * 9 8 7 11 11 C 1.30274 * 109.38134 * 359.97438 * 10 9 8 12 12 C 1.50702 * 126.27888 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47009 * 89.97830 * 12 11 10 14 14 C 1.50694 * 109.47386 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99766 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00507 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99748 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00388 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47248 * 119.99680 * 18 16 14 21 21 H 1.48494 * 109.47367 * 239.99731 * 18 16 14 22 22 O 1.34355 * 107.43791 * 0.02562 * 11 10 9 23 23 C 1.46851 * 111.19550 * 298.25007 * 5 4 3 24 24 C 1.53035 * 109.52105 * 61.74815 * 23 5 4 25 25 H 1.09000 * 109.46991 * 59.99804 * 1 2 3 26 26 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47030 * 300.00249 * 1 2 3 28 28 H 1.09004 * 109.52064 * 120.12859 * 2 1 3 29 29 H 1.08999 * 109.50199 * 62.43774 * 3 2 1 30 30 H 1.08997 * 109.53466 * 302.33949 * 3 2 1 31 31 H 1.08995 * 109.46736 * 299.16536 * 4 3 2 32 32 H 1.09002 * 109.45347 * 179.18626 * 4 3 2 33 33 H 1.09001 * 109.47487 * 49.99571 * 6 5 4 34 34 H 1.08996 * 109.46913 * 289.99798 * 6 5 4 35 35 H 1.09002 * 109.47452 * 59.99922 * 7 6 5 36 36 H 1.08996 * 109.47384 * 300.00033 * 7 6 5 37 37 H 1.09000 * 109.46777 * 209.97327 * 12 11 10 38 38 H 1.09001 * 109.47251 * 329.97979 * 12 11 10 39 39 H 1.09002 * 109.47268 * 300.00093 * 13 12 11 40 40 H 1.09006 * 109.47427 * 59.99830 * 13 12 11 41 41 H 0.97001 * 119.99770 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.46247 * 181.76189 * 23 5 4 43 43 H 1.08999 * 109.46363 * 301.73027 * 23 5 4 44 44 H 1.09000 * 109.50091 * 180.88196 * 24 23 5 45 45 H 1.09001 * 109.50243 * 60.76116 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4432 0.0000 4 6 3.5710 1.4369 -0.0598 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8372 -1.4382 7 6 5.9186 -0.0963 -2.5637 8 6 7.4132 0.0014 -2.7302 9 7 8.3059 -0.7249 -2.1197 10 7 9.4812 -0.3683 -2.5031 11 6 9.3782 0.5973 -3.3715 12 6 10.5179 1.2980 -4.0652 13 6 10.8482 0.5677 -5.3684 14 6 11.9874 1.2687 -6.0624 15 1 12.4317 2.1471 -5.6182 16 6 12.4624 0.7888 -7.2645 17 7 11.9210 -0.2806 -7.8057 18 14 13.8741 1.6582 -8.1251 19 1 14.3025 2.8273 -7.3157 20 1 15.0140 0.7189 -8.2788 21 1 13.4286 2.1193 -9.4645 22 8 8.0696 0.8536 -3.5353 23 6 3.5722 -0.6587 -1.2766 24 6 2.0430 -0.7151 -1.2530 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8942 -0.5157 0.8886 29 1 1.7153 1.9450 0.9109 30 1 1.6457 1.9703 -0.8679 31 1 3.9667 0.9223 0.8157 32 1 3.9379 2.4633 -0.0745 33 1 5.9572 0.5467 -0.5081 34 1 5.7406 1.8631 -1.6864 35 1 5.4301 0.1942 -3.4939 36 1 5.6466 -1.1222 -2.3155 37 1 10.2310 2.3259 -4.2874 38 1 11.3938 1.2974 -3.4163 39 1 11.1350 -0.4602 -5.1462 40 1 9.9723 0.5683 -6.0173 41 1 12.2555 -0.6185 -8.6512 42 1 3.9400 -1.1546 -2.1748 43 1 3.9678 -1.1636 -0.3953 44 1 1.7175 -1.7552 -1.2374 45 1 1.6470 -0.2225 -2.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327026594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:46 Heat of formation + Delta-G solvation = 11.386121 kcal Electronic energy + Delta-G solvation = -22801.649271 eV Core-core repulsion = 19433.968322 eV Total energy + Delta-G solvation = -3367.680949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.80289 -39.65031 -35.89794 -35.72708 -34.41180 -32.81267 -31.64891 -31.08352 -29.16005 -27.55468 -25.60345 -24.16858 -23.49165 -22.71148 -22.21678 -21.06962 -20.80585 -19.98286 -17.14449 -16.96000 -16.31367 -16.17427 -15.60659 -15.15669 -14.90243 -14.56828 -14.49686 -14.23420 -14.16400 -13.68516 -13.25073 -12.87492 -12.82194 -12.59031 -12.38361 -12.22855 -12.00663 -11.85709 -11.60356 -11.52364 -11.47316 -11.36253 -11.04994 -10.99636 -10.76452 -10.65548 -10.57997 -10.51888 -10.13223 -9.95656 -9.31085 -8.89571 -8.65158 -8.46842 -6.10714 -4.15595 1.54632 2.60715 2.78801 3.27016 3.34574 3.38156 3.52144 4.19275 4.36150 4.38994 4.43767 4.44392 4.62025 4.66577 4.92856 4.97459 5.03131 5.05241 5.16682 5.17602 5.25165 5.25808 5.31888 5.35485 5.40783 5.52063 5.56606 5.60231 5.69650 5.76712 5.77602 5.81388 5.83164 5.89323 5.98185 6.09154 6.18585 6.21902 6.61036 6.69549 6.74613 7.47348 7.55310 7.84887 8.20186 8.72305 8.89865 9.49384 11.00614 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040891 B = 0.002202 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.588466 B =12712.442580 C =12790.054891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.055 3.945 5 N -0.534 5.534 6 C 0.060 3.940 7 C -0.021 4.021 8 C 0.136 3.864 9 N -0.286 5.286 10 N -0.305 5.305 11 C 0.200 3.800 12 C -0.026 4.026 13 C 0.027 3.973 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.224 6.224 23 C 0.042 3.958 24 C -0.111 4.111 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.263 0.737 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.281 2.275 15.209 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.148 4.148 4 C -0.073 4.073 5 N -0.259 5.259 6 C -0.069 4.069 7 C -0.060 4.060 8 C -0.076 4.076 9 N -0.133 5.133 10 N -0.151 5.151 11 C -0.010 4.010 12 C -0.064 4.064 13 C -0.011 4.011 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 O -0.103 6.103 23 C -0.086 4.086 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.957 1.501 15.445 26.887 hybrid contribution 0.674 0.754 -0.656 1.205 sum -21.283 2.255 14.789 26.015 Atomic orbital electron populations 1.21806 0.95065 1.01664 1.01786 1.21205 0.95674 0.96248 0.98340 1.21644 0.94378 0.96559 1.02266 1.22095 0.95962 0.99051 0.90152 1.62017 1.11348 1.14446 1.38136 1.22078 0.87479 1.00315 0.97013 1.20193 0.81638 1.02516 1.01616 1.27544 0.98416 0.90010 0.91660 1.74271 0.95031 1.22232 1.21785 1.74409 1.15368 1.12169 1.13172 1.28949 0.82512 0.94771 0.94726 1.20741 0.88296 0.98647 0.98745 1.19171 0.97438 0.96161 0.88338 1.21107 1.16880 1.12713 1.05680 0.91977 1.25029 0.97080 0.94989 0.97245 1.69983 1.41617 1.22639 1.18704 0.86433 0.81940 0.79599 0.79430 1.19560 1.20883 1.20931 1.84807 1.20189 1.51350 1.53966 1.22298 0.96032 0.88813 1.01413 1.21653 0.94459 1.00377 0.98419 0.92538 0.92746 0.92818 0.91598 0.91577 0.90911 0.94733 0.90579 0.93706 0.89819 0.87721 0.87327 0.89534 0.88012 0.95424 0.96009 0.92781 0.89827 0.94524 0.91475 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.21 37.16 0.34 -0.46 16 2 C -0.10 -0.61 2.79 -90.49 -0.25 -0.86 16 3 C -0.11 -0.73 5.38 -26.65 -0.14 -0.87 16 4 C 0.06 0.43 5.42 -3.83 -0.02 0.41 16 5 N -0.53 -4.72 4.81 -234.67 -1.13 -5.84 16 6 C 0.06 0.60 5.25 -3.82 -0.02 0.58 16 7 C -0.02 -0.23 5.09 -27.89 -0.14 -0.37 16 8 C 0.14 2.21 7.73 -12.94 -0.10 2.11 16 9 N -0.29 -5.46 12.22 32.55 0.40 -5.06 16 10 N -0.31 -6.45 12.22 32.55 0.40 -6.06 16 11 C 0.20 4.04 7.73 -12.94 -0.10 3.94 16 12 C -0.03 -0.52 5.78 -27.88 -0.16 -0.68 16 13 C 0.03 0.68 4.95 -27.89 -0.14 0.55 16 14 C -0.53 -14.32 9.11 -34.44 -0.31 -14.64 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 18 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 O -0.22 -4.14 10.87 5.39 0.06 -4.08 16 23 C 0.04 0.33 4.85 -3.83 -0.02 0.31 16 24 C -0.11 -0.76 5.38 -26.65 -0.14 -0.90 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 1.07 6.21 -51.93 -0.32 0.74 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 42 H 0.08 0.63 5.81 -51.93 -0.30 0.33 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -31.35 362.96 -8.17 -39.52 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -7.77 Total: -5.00 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.31 Total: -9.34 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.40 Total: -42.67 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.06 Total: -4.08 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.35 -8.17 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327026594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.907 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds