Wall clock time and date at job start Tue Mar 31 2020 07:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53122 * 109.52603 * 2 1 4 4 C 1.53035 * 109.27765 * 182.37346 * 3 2 1 5 5 N 1.46849 * 109.51995 * 59.18645 * 4 3 2 6 6 C 1.46903 * 110.99923 * 174.15876 * 5 4 3 7 7 C 1.52995 * 109.47332 * 169.99477 * 6 5 4 8 8 C 1.50700 * 109.47477 * 179.97438 * 7 6 5 9 9 N 1.30274 * 126.28218 * 89.97603 * 8 7 6 10 10 N 1.28669 * 109.37957 * 180.02562 * 9 8 7 11 11 C 1.30274 * 109.38134 * 359.97438 * 10 9 8 12 12 C 1.50702 * 126.27888 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47009 * 89.97830 * 12 11 10 14 14 C 1.50694 * 109.47386 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99766 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00507 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99748 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00388 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47248 * 119.99680 * 18 16 14 21 21 H 1.48494 * 109.47367 * 239.99731 * 18 16 14 22 22 O 1.34355 * 107.43791 * 0.02562 * 11 10 9 23 23 C 1.46851 * 111.19550 * 298.25007 * 5 4 3 24 24 C 1.53035 * 109.52105 * 61.74815 * 23 5 4 25 25 H 1.09000 * 109.46991 * 59.99804 * 1 2 3 26 26 H 1.08996 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47030 * 300.00249 * 1 2 3 28 28 H 1.09004 * 109.52064 * 120.12859 * 2 1 3 29 29 H 1.08999 * 109.50199 * 62.43774 * 3 2 1 30 30 H 1.08997 * 109.53466 * 302.33949 * 3 2 1 31 31 H 1.08995 * 109.46736 * 299.16536 * 4 3 2 32 32 H 1.09002 * 109.45347 * 179.18626 * 4 3 2 33 33 H 1.09001 * 109.47487 * 49.99571 * 6 5 4 34 34 H 1.08996 * 109.46913 * 289.99798 * 6 5 4 35 35 H 1.09002 * 109.47452 * 59.99922 * 7 6 5 36 36 H 1.08996 * 109.47384 * 300.00033 * 7 6 5 37 37 H 1.09000 * 109.46777 * 209.97327 * 12 11 10 38 38 H 1.09001 * 109.47251 * 329.97979 * 12 11 10 39 39 H 1.09002 * 109.47268 * 300.00093 * 13 12 11 40 40 H 1.09006 * 109.47427 * 59.99830 * 13 12 11 41 41 H 0.97001 * 119.99770 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.46247 * 181.76189 * 23 5 4 43 43 H 1.08999 * 109.46363 * 301.73027 * 23 5 4 44 44 H 1.09000 * 109.50091 * 180.88196 * 24 23 5 45 45 H 1.09001 * 109.50243 * 60.76116 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4432 0.0000 4 6 3.5710 1.4369 -0.0598 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8372 -1.4382 7 6 5.9186 -0.0963 -2.5637 8 6 7.4132 0.0014 -2.7302 9 7 8.3059 -0.7249 -2.1197 10 7 9.4812 -0.3683 -2.5031 11 6 9.3782 0.5973 -3.3715 12 6 10.5179 1.2980 -4.0652 13 6 10.8482 0.5677 -5.3684 14 6 11.9874 1.2687 -6.0624 15 1 12.4317 2.1471 -5.6182 16 6 12.4624 0.7888 -7.2645 17 7 11.9210 -0.2806 -7.8057 18 14 13.8741 1.6582 -8.1251 19 1 14.3025 2.8273 -7.3157 20 1 15.0140 0.7189 -8.2788 21 1 13.4286 2.1193 -9.4645 22 8 8.0696 0.8536 -3.5353 23 6 3.5722 -0.6587 -1.2766 24 6 2.0430 -0.7151 -1.2530 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8942 -0.5157 0.8886 29 1 1.7153 1.9450 0.9109 30 1 1.6457 1.9703 -0.8679 31 1 3.9667 0.9223 0.8157 32 1 3.9379 2.4633 -0.0745 33 1 5.9572 0.5467 -0.5081 34 1 5.7406 1.8631 -1.6864 35 1 5.4301 0.1942 -3.4939 36 1 5.6466 -1.1222 -2.3155 37 1 10.2310 2.3259 -4.2874 38 1 11.3938 1.2974 -3.4163 39 1 11.1350 -0.4602 -5.1462 40 1 9.9723 0.5683 -6.0173 41 1 12.2555 -0.6185 -8.6512 42 1 3.9400 -1.1546 -2.1748 43 1 3.9678 -1.1636 -0.3953 44 1 1.7175 -1.7552 -1.2374 45 1 1.6470 -0.2225 -2.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327026594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:46 Heat of formation + Delta-G solvation = -11.182398 kcal Electronic energy + Delta-G solvation = -22802.627915 eV Core-core repulsion = 19433.968322 eV Total energy + Delta-G solvation = -3368.659593 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.28829 -40.28757 -37.23191 -36.73908 -36.13488 -34.29853 -33.02887 -31.76515 -30.42091 -28.52722 -27.33776 -24.99811 -24.50160 -24.29720 -23.12652 -22.56551 -21.92454 -20.54999 -18.80718 -18.41076 -17.99631 -17.20239 -16.52295 -16.38839 -15.97370 -15.69066 -15.55272 -15.19178 -14.98239 -14.76051 -14.64488 -14.32870 -13.65260 -13.54417 -13.52014 -13.37972 -13.18871 -12.98689 -12.89375 -12.75474 -12.59728 -12.43446 -12.34449 -12.19474 -12.07860 -11.91468 -11.83441 -11.52685 -11.35616 -11.17421 -11.08460 -10.61234 -10.43687 -9.35442 -8.23662 -6.36419 0.10514 1.21683 1.29152 1.43888 1.44568 1.57952 2.40470 2.62961 3.05977 3.11392 3.40320 3.69644 3.77004 3.87756 3.92723 3.94685 4.15681 4.21260 4.31861 4.33702 4.43733 4.45477 4.47359 4.55209 4.58669 4.62281 4.75161 4.80672 4.84979 4.85871 4.87978 4.89205 4.96167 5.05805 5.16786 5.25174 5.31843 5.37028 5.37498 5.47377 5.57481 5.73592 5.99561 6.08902 6.08998 6.79124 7.22710 7.33981 8.89121 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040891 B = 0.002202 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.588466 B =12712.442580 C =12790.054891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.107 4.107 4 C 0.052 3.948 5 N -0.537 5.537 6 C 0.068 3.932 7 C -0.018 4.018 8 C 0.160 3.840 9 N -0.315 5.315 10 N -0.328 5.328 11 C 0.188 3.812 12 C -0.011 4.011 13 C 0.034 3.966 14 C -0.540 4.540 15 H 0.078 0.922 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.254 1.254 20 H -0.282 1.282 21 H -0.279 1.279 22 O -0.228 6.228 23 C 0.038 3.962 24 C -0.109 4.109 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.114 0.886 39 H -0.008 1.008 40 H -0.005 1.005 41 H 0.265 0.735 42 H 0.087 0.913 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.085 3.501 15.681 28.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.144 4.144 4 C -0.075 4.075 5 N -0.262 5.262 6 C -0.061 4.061 7 C -0.056 4.056 8 C -0.052 4.052 9 N -0.161 5.161 10 N -0.173 5.173 11 C -0.023 4.023 12 C -0.050 4.050 13 C -0.004 4.004 14 C -0.578 4.578 15 H 0.096 0.904 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.178 1.178 20 H -0.208 1.208 21 H -0.205 1.205 22 O -0.108 6.108 23 C -0.089 4.089 24 C -0.146 4.146 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.011 0.989 40 H 0.013 0.987 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.774 2.727 15.949 27.937 hybrid contribution 0.790 0.322 -0.753 1.138 sum -21.984 3.050 15.196 26.899 Atomic orbital electron populations 1.21776 0.94287 1.01977 1.01989 1.21207 0.96308 0.95946 0.97997 1.21622 0.93372 0.96837 1.02607 1.22165 0.96823 0.98964 0.89560 1.62062 1.10179 1.15125 1.38814 1.21943 0.88404 0.99721 0.96023 1.20525 0.78146 1.03982 1.02965 1.28555 0.99856 0.87673 0.89135 1.74223 0.94937 1.23641 1.23280 1.74344 1.16755 1.12480 1.13764 1.28758 0.83153 0.95126 0.95294 1.20481 0.89176 0.98979 0.96337 1.18954 0.96050 0.94909 0.90509 1.21587 1.17132 1.13116 1.05923 0.90365 1.26055 1.00013 0.95686 0.98266 1.70128 1.43527 1.24498 1.19331 0.85267 0.78081 0.78702 0.78197 1.17780 1.20757 1.20523 1.84817 1.19694 1.51872 1.54406 1.22378 0.96894 0.88234 1.01431 1.21640 0.93543 1.00995 0.98457 0.92624 0.92402 0.92330 0.91802 0.90491 0.91354 0.94954 0.90419 0.94459 0.90023 0.86104 0.85660 0.87196 0.86780 0.98923 0.98654 0.92673 0.89468 0.94824 0.90578 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.21 71.98 0.66 -0.65 16 2 C -0.10 -1.06 2.79 -10.71 -0.03 -1.09 16 3 C -0.11 -1.24 5.38 30.65 0.16 -1.07 16 4 C 0.05 0.74 5.42 86.32 0.47 1.21 16 5 N -0.54 -8.64 4.81 -896.37 -4.31 -12.95 16 6 C 0.07 1.26 5.25 86.30 0.45 1.72 16 7 C -0.02 -0.36 5.09 29.85 0.15 -0.21 16 8 C 0.16 5.09 7.73 88.34 0.68 5.77 16 9 N -0.32 -12.00 12.22 -165.50 -2.02 -14.02 16 10 N -0.33 -13.98 12.22 -165.51 -2.02 -16.00 16 11 C 0.19 7.58 7.73 88.34 0.68 8.26 16 12 C -0.01 -0.45 5.78 29.85 0.17 -0.28 16 13 C 0.03 1.77 4.95 29.85 0.15 1.91 16 14 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 15 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 17 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 18 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 19 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 22 O -0.23 -8.32 10.87 -3.63 -0.04 -8.36 16 23 C 0.04 0.54 4.85 86.32 0.42 0.96 16 24 C -0.11 -1.29 5.38 30.65 0.16 -1.13 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.04 0.75 8.08 -2.39 -0.02 0.74 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.13 2.22 6.21 -2.39 -0.01 2.21 16 37 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 38 H 0.11 4.27 8.14 -2.39 -0.02 4.26 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 41 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.09 1.15 5.81 -2.39 -0.01 1.14 16 43 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.83 362.96 -0.30 -68.13 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.95 Total: 7.82 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.84 Total: -13.41 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -8.07 Total: -99.26 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.04 Total: -8.36 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -67.83 -0.30 -68.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327026594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.949 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds