Wall clock time and date at job start Tue Mar 31 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38118 * 120.40131 * 2 1 4 4 C 1.39621 * 118.33436 * 179.97438 * 3 2 1 5 5 N 1.38543 * 120.53164 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00095 * 4.99833 * 5 4 3 7 7 C 1.50704 * 109.47011 * 84.22014 * 6 5 4 8 8 H 1.07995 * 119.99813 * 354.87399 * 7 6 5 9 9 C 1.37878 * 119.99582 * 175.15186 * 7 6 5 10 10 N 1.31514 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99882 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46940 * 59.99674 * 11 9 7 13 13 H 1.48494 * 109.47035 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46988 * 299.99874 * 11 9 7 15 15 C 1.46498 * 119.99697 * 184.99533 * 5 4 3 16 16 C 1.53000 * 109.47046 * 89.07316 * 15 5 4 17 17 C 1.53007 * 109.47375 * 56.86501 * 16 15 5 18 18 C 1.52995 * 109.47331 * 176.86641 * 16 15 5 19 19 C 1.53001 * 109.46955 * 296.86739 * 16 15 5 20 20 N 1.32989 * 118.93854 * 0.24855 * 4 3 2 21 21 C 1.31751 * 120.68516 * 359.49006 * 20 4 3 22 22 C 1.50698 * 119.08788 * 180.26065 * 21 20 4 23 23 O 1.42894 * 109.47468 * 270.26234 * 22 21 20 24 24 N 1.31790 * 121.83139 * 0.52774 * 21 20 4 25 25 H 1.09002 * 109.46746 * 90.00138 * 1 2 3 26 26 H 1.08996 * 109.47276 * 210.00059 * 1 2 3 27 27 H 1.08997 * 109.47369 * 330.00537 * 1 2 3 28 28 H 1.08003 * 120.83113 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46954 * 324.22131 * 6 5 4 30 30 H 1.08993 * 109.47152 * 204.22185 * 6 5 4 31 31 H 0.97003 * 119.99881 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.46970 * 209.06742 * 15 5 4 33 33 H 1.08995 * 109.47494 * 329.06972 * 15 5 4 34 34 H 1.08999 * 109.46628 * 60.00173 * 17 16 15 35 35 H 1.08993 * 109.47252 * 180.02562 * 17 16 15 36 36 H 1.09006 * 109.46761 * 300.00236 * 17 16 15 37 37 H 1.08997 * 109.47479 * 59.99643 * 18 16 15 38 38 H 1.09006 * 109.47591 * 179.97438 * 18 16 15 39 39 H 1.09003 * 109.47039 * 299.99768 * 18 16 15 40 40 H 1.08996 * 109.46969 * 66.64035 * 19 16 15 41 41 H 1.08997 * 109.47109 * 186.63842 * 19 16 15 42 42 H 1.08998 * 109.46995 * 306.64240 * 19 16 15 43 43 H 1.09009 * 109.46911 * 30.26198 * 22 21 20 44 44 H 1.08998 * 109.47627 * 150.25441 * 22 21 20 45 45 H 0.96702 * 113.99966 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1913 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3081 0.0000 6 6 3.6775 3.6062 0.1095 7 6 3.4241 3.9199 1.5616 8 1 3.6557 3.1874 2.3206 9 6 2.8914 5.1399 1.9204 10 7 2.6039 6.0296 0.9955 11 14 2.5780 5.5291 3.7204 12 1 3.8572 5.4612 4.4715 13 1 2.0065 6.8945 3.8393 14 1 1.6216 4.5411 4.2812 15 6 5.8071 2.2441 -0.1099 16 6 6.2088 2.2653 -1.5860 17 6 5.6380 3.5189 -2.2521 18 6 7.7345 2.2773 -1.6993 19 6 5.6554 1.0207 -2.2830 20 7 4.2024 -0.0454 -0.0040 21 6 3.4956 -1.1573 0.0011 22 6 4.2140 -2.4820 0.0017 23 8 4.4417 -2.9010 -1.3453 24 7 2.1778 -1.1432 0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6862 2.1380 -0.0004 29 1 2.7285 3.5714 -0.4257 30 1 4.3110 4.3799 -0.3242 31 1 2.2294 6.8880 1.2481 32 1 6.2477 3.1016 0.3988 33 1 6.1663 1.3241 0.3513 34 1 6.0323 4.4056 -1.7555 35 1 5.9238 3.5337 -3.3038 36 1 4.5510 3.5103 -2.1714 37 1 8.1412 1.3842 -1.2249 38 1 8.0207 2.2919 -2.7510 39 1 8.1287 3.1640 -1.2028 40 1 4.5669 1.0709 -2.3058 41 1 6.0385 0.9746 -3.3024 42 1 5.9667 0.1300 -1.7372 43 1 5.1694 -2.3770 0.5160 44 1 3.6047 -3.2256 0.5155 45 1 4.9010 -3.7486 -1.4212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327196748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:15 Heat of formation + Delta-G solvation = -10.042155 kcal Electronic energy + Delta-G solvation = -24974.922857 eV Core-core repulsion = 21606.312708 eV Total energy + Delta-G solvation = -3368.610149 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46736 -38.06189 -36.63918 -34.92783 -33.61137 -32.65829 -30.92409 -28.24536 -27.98874 -26.93102 -26.79033 -26.57537 -24.96083 -23.19730 -21.36996 -20.35380 -18.53527 -17.44798 -16.95415 -16.71233 -16.21630 -14.89306 -14.80892 -14.69584 -14.29000 -14.22320 -14.02169 -13.97665 -13.46051 -12.99708 -12.78440 -12.61219 -12.46631 -12.09317 -11.91154 -11.89034 -11.75638 -11.38263 -11.28268 -11.23548 -10.94744 -10.87693 -10.69068 -10.38909 -10.25193 -10.21903 -10.04194 -10.02549 -9.78666 -9.54554 -8.94385 -8.59196 -8.51392 -7.02008 -6.17593 -4.27029 1.62724 2.07343 3.22803 3.27633 3.30632 3.69137 4.07175 4.32412 4.47671 4.72833 5.05789 5.13424 5.21569 5.22079 5.30870 5.39604 5.40912 5.59559 5.73935 5.84832 5.87727 5.90142 5.92745 5.95448 6.12812 6.17760 6.20255 6.21842 6.26444 6.33590 6.38989 6.42710 6.55493 6.58805 6.77854 6.82889 6.93425 7.06685 7.14792 7.50777 7.64141 7.75038 8.03570 8.18023 8.23840 8.77855 8.96024 9.40223 10.86428 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.006443 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.821921 B = 4344.522814 C = 5892.552061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.182 3.818 3 C -0.272 4.272 4 C 0.451 3.549 5 N -0.567 5.567 6 C 0.249 3.751 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.137 3.863 16 C -0.085 4.085 17 C -0.139 4.139 18 C -0.134 4.134 19 C -0.123 4.123 20 N -0.571 5.571 21 C 0.345 3.655 22 C 0.156 3.844 23 O -0.562 6.562 24 N -0.566 5.566 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -11.254 -4.153 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.042 3.958 3 C -0.300 4.300 4 C 0.207 3.793 5 N -0.274 5.274 6 C 0.129 3.871 7 C -0.575 4.575 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.013 3.987 16 C -0.087 4.087 17 C -0.196 4.196 18 C -0.192 4.192 19 C -0.180 4.180 20 N -0.299 5.299 21 C 0.074 3.926 22 C 0.076 3.924 23 O -0.366 6.366 24 N -0.290 5.290 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.166 0.834 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.248 -11.080 -4.312 12.626 hybrid contribution -0.352 0.792 1.183 1.466 sum 3.897 -10.288 -3.129 11.438 Atomic orbital electron populations 1.20653 0.88858 1.03280 1.02800 1.21173 0.96647 0.87736 0.90270 1.22161 0.94182 1.00796 1.12871 1.18473 0.88291 0.86333 0.86238 1.47077 1.05166 1.03890 1.71284 1.19520 0.93122 0.77362 0.97067 1.21482 1.42938 1.00604 0.92487 0.92345 1.24916 0.95133 0.95864 0.97785 1.69909 1.43108 1.07145 1.32851 0.86572 0.78709 0.77457 0.84839 1.20182 1.21091 1.20123 1.21403 0.80539 1.02389 0.94328 1.20994 0.95014 0.96106 0.96548 1.21931 1.01911 0.96775 0.99018 1.21770 0.94807 1.01451 1.01198 1.21748 1.00412 0.97318 0.98568 1.67688 1.41057 0.97360 1.23768 1.22027 0.86567 0.92500 0.91523 1.20469 0.97757 0.90108 0.84067 1.86538 1.81562 1.42593 1.25926 1.67868 1.09080 1.30231 1.21783 0.90568 0.90760 0.90423 0.83429 0.95161 0.93179 0.92449 0.90850 0.90624 0.92666 0.93784 0.91890 0.92829 0.92994 0.92781 0.93649 0.94337 0.91681 0.91564 0.91557 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.21 36.01 0.37 -1.04 16 2 C 0.18 3.38 6.82 -82.33 -0.56 2.82 16 3 C -0.27 -5.57 9.00 -39.11 -0.35 -5.92 16 4 C 0.45 9.41 5.78 -154.78 -0.89 8.52 16 5 N -0.57 -11.82 2.06 -175.04 -0.36 -12.18 16 6 C 0.25 5.88 3.55 -5.19 -0.02 5.87 16 7 C -0.54 -14.07 9.35 -34.44 -0.32 -14.39 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 11 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.14 2.51 4.59 -4.04 -0.02 2.49 16 16 C -0.09 -1.36 0.85 -154.51 -0.13 -1.49 16 17 C -0.14 -2.30 7.19 37.16 0.27 -2.04 16 18 C -0.13 -1.77 8.47 37.15 0.31 -1.46 16 19 C -0.12 -2.04 7.08 37.16 0.26 -1.78 16 20 N -0.57 -11.17 7.31 -9.97 -0.07 -11.24 16 21 C 0.35 6.37 7.27 -157.24 -1.14 5.22 16 22 C 0.16 2.15 7.48 36.00 0.27 2.42 16 23 O -0.56 -7.50 13.64 -35.23 -0.48 -7.98 16 24 N -0.57 -10.72 10.27 -7.07 -0.07 -10.79 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 28 H 0.15 3.14 6.28 -52.48 -0.33 2.81 16 29 H 0.03 0.76 6.36 -51.93 -0.33 0.43 16 30 H 0.05 1.23 6.41 -51.93 -0.33 0.90 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 33 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16 34 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.18 6.21 -51.93 -0.32 0.86 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.87 6.66 -51.93 -0.35 0.52 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.11 7.42 -51.93 -0.39 0.73 16 43 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.38 2.77 9.12 45.56 0.42 3.19 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -30.19 359.84 -8.52 -38.71 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.61 Total: 5.23 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.06 Total: 0.87 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.23 Total: -58.00 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.48 Total: -7.98 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.19 -8.52 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327196748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.664 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds