Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99926 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47011 * 175.12067 * 4 3 2 6 6 C 1.52994 * 109.47510 * 55.11375 * 4 3 2 7 7 C 1.50697 * 109.47359 * 174.99989 * 6 4 3 8 8 C 1.38229 * 119.99982 * 269.72869 * 7 6 4 9 9 C 1.38245 * 119.99790 * 179.76450 * 8 7 6 10 10 C 1.38232 * 119.99956 * 0.51060 * 9 8 7 11 11 C 1.38233 * 119.99884 * 359.74241 * 10 9 8 12 12 C 1.38234 * 119.99990 * 89.99918 * 7 6 4 13 13 N 1.46903 * 109.46749 * 295.11269 * 4 3 2 14 14 C 1.46907 * 110.99975 * 53.33245 * 13 4 3 15 15 C 1.46901 * 111.00287 * 289.37582 * 13 4 3 16 16 C 1.52991 * 109.47098 * 287.80708 * 15 13 4 17 17 H 1.09003 * 109.47364 * 58.42526 * 16 15 13 18 18 O 1.42901 * 109.47143 * 298.42350 * 16 15 13 19 19 C 1.50705 * 109.47259 * 178.42549 * 16 15 13 20 20 H 1.08000 * 119.99483 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99851 * 180.02562 * 19 16 15 22 22 N 1.31524 * 119.99612 * 179.97438 * 21 19 16 23 23 Si 1.86797 * 120.00472 * 359.97438 * 21 19 16 24 24 H 1.48498 * 109.47145 * 90.00227 * 23 21 19 25 25 H 1.48498 * 109.47071 * 209.99662 * 23 21 19 26 26 H 1.48499 * 109.47169 * 330.00139 * 23 21 19 27 27 H 1.09008 * 109.47330 * 300.00213 * 1 2 3 28 28 H 1.08999 * 109.47362 * 60.00074 * 1 2 3 29 29 H 1.09000 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47080 * 59.99780 * 3 2 1 31 31 H 1.08996 * 109.46979 * 299.99698 * 3 2 1 32 32 H 1.09003 * 109.47192 * 295.00614 * 6 4 3 33 33 H 1.09005 * 109.46780 * 54.99828 * 6 4 3 34 34 H 1.07998 * 120.00086 * 359.97438 * 8 7 6 35 35 H 1.07996 * 119.99590 * 180.22862 * 9 8 7 36 36 H 1.07998 * 119.99705 * 179.72774 * 10 9 8 37 37 H 1.08001 * 120.00102 * 179.97438 * 11 10 9 38 38 H 1.08005 * 119.99932 * 0.02562 * 12 7 6 39 39 H 1.08999 * 109.46946 * 289.33513 * 14 13 4 40 40 H 1.08998 * 109.46937 * 49.33417 * 14 13 4 41 41 H 1.08997 * 109.46955 * 169.33331 * 14 13 4 42 42 H 1.08996 * 109.46844 * 167.80395 * 15 13 4 43 43 H 1.09004 * 109.47058 * 47.80750 * 15 13 4 44 44 H 0.96702 * 114.00009 * 300.00153 * 18 16 15 45 45 H 0.97003 * 119.99749 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1767 -0.0881 6 6 3.9783 0.3222 -1.1842 7 6 5.4834 0.3038 -1.2571 8 6 6.1507 1.2553 -2.0055 9 6 7.5317 1.2414 -2.0684 10 6 8.2446 0.2697 -1.3914 11 6 7.5770 -0.6850 -0.6472 12 6 6.1964 -0.6678 -0.5800 13 7 3.9776 0.5598 1.2532 14 6 3.2784 -0.7116 1.4830 15 6 3.7961 1.4732 2.3893 16 6 4.8346 2.5941 2.3133 17 1 4.7261 3.1266 1.3685 18 8 6.1468 2.0342 2.3966 19 6 4.6240 3.5525 3.4572 20 1 3.8286 3.3795 4.1670 21 6 5.4460 4.6505 3.5968 22 7 5.2618 5.4872 4.5947 23 14 6.8212 4.9500 2.3686 24 1 6.3129 5.7837 1.2498 25 1 7.9413 5.6552 3.0420 26 1 7.3028 3.6494 1.8378 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.6085 -0.6946 -1.0513 33 1 3.5748 0.7377 -2.1076 34 1 5.5935 2.0116 -2.5383 35 1 8.0532 1.9870 -2.6501 36 1 9.3232 0.2562 -1.4442 37 1 8.1339 -1.4444 -0.1187 38 1 5.6747 -1.4141 0.0008 39 1 2.2354 -0.5132 1.7300 40 1 3.3284 -1.3219 0.5812 41 1 3.7525 -1.2430 2.3081 42 1 3.9228 0.9230 3.3216 43 1 2.7948 1.9026 2.3540 44 1 6.3144 1.5447 3.2135 45 1 5.8403 6.2595 4.6932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334177719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -55.812102 kcal Electronic energy + Delta-G solvation = -25161.235896 eV Core-core repulsion = 21758.348262 eV Total energy + Delta-G solvation = -3402.887633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59638 -38.38578 -36.75872 -35.19840 -32.59860 -32.16653 -30.49729 -29.74942 -28.82975 -26.86986 -26.08367 -25.05020 -23.49983 -22.17440 -21.47159 -20.58579 -19.12933 -17.31338 -16.62857 -16.56109 -15.99049 -15.33859 -15.11821 -14.69180 -14.67976 -14.47813 -14.22914 -14.09397 -13.25345 -13.15093 -13.02429 -12.84447 -12.51061 -12.39089 -12.14420 -11.85405 -11.78869 -11.52353 -11.45843 -11.11691 -10.90198 -10.81914 -10.76706 -10.59616 -10.41335 -10.24644 -9.77525 -9.53455 -8.93187 -8.56760 -8.49244 -8.25093 -8.13032 -7.54424 -6.09078 -4.19699 1.77574 1.84404 3.42795 3.52822 3.79885 3.83770 4.18229 4.46177 4.59383 4.98378 5.16461 5.19888 5.21832 5.27395 5.30803 5.33894 5.42130 5.47941 5.51619 5.55867 5.59875 5.70869 5.82528 5.89821 5.90045 5.99692 6.05327 6.11736 6.15696 6.29754 6.38080 6.46039 6.50712 6.51883 6.70346 6.84317 6.89830 7.05938 7.12132 7.36115 7.42201 7.51514 7.69877 7.80374 8.34347 8.88337 9.21522 9.57261 11.01615 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.007459 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.001199 B = 3753.168536 C = 5552.492610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.025 3.975 4 C 0.093 3.907 5 H 0.098 0.902 6 C -0.067 4.067 7 C -0.060 4.060 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.128 4.128 11 C -0.120 4.120 12 C -0.082 4.082 13 N -0.517 5.517 14 C 0.028 3.972 15 C 0.038 3.962 16 C 0.206 3.794 17 H 0.047 0.953 18 O -0.565 6.565 19 C -0.565 4.565 20 H 0.069 0.931 21 C 0.084 3.916 22 N -0.896 5.896 23 Si 0.868 3.132 24 H -0.290 1.290 25 H -0.297 1.297 26 H -0.211 1.211 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.031 0.969 44 H 0.351 0.649 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -12.706 -12.898 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C -0.053 4.053 4 C -0.016 4.016 5 H 0.116 0.884 6 C -0.105 4.105 7 C -0.060 4.060 8 C -0.140 4.140 9 C -0.141 4.141 10 C -0.146 4.146 11 C -0.138 4.138 12 C -0.100 4.100 13 N -0.239 5.239 14 C -0.120 4.120 15 C -0.090 4.090 16 C 0.148 3.852 17 H 0.065 0.935 18 O -0.369 6.369 19 C -0.603 4.603 20 H 0.087 0.913 21 C -0.120 4.120 22 N -0.533 5.533 23 Si 0.694 3.306 24 H -0.217 1.217 25 H -0.224 1.224 26 H -0.133 1.133 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.196 0.804 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.908 -12.561 -13.441 18.625 hybrid contribution -0.657 0.830 0.354 1.116 sum -3.565 -11.732 -13.086 17.933 Atomic orbital electron populations 1.22698 0.82284 1.02221 0.99747 1.88079 1.18774 1.27745 1.95066 1.23403 0.96278 0.84968 1.00656 1.21872 0.89243 0.99368 0.91158 0.88431 1.20588 0.91539 1.01391 0.96967 1.19631 0.95161 0.94974 0.96191 1.20947 0.94396 0.98532 1.00115 1.20976 0.94245 0.98578 1.00306 1.20985 0.99222 0.95871 0.98502 1.21030 0.94680 0.98996 0.99067 1.20850 0.93548 0.98358 0.97279 1.62165 1.55793 1.04296 1.01687 1.22507 0.96675 0.92041 1.00777 1.22869 0.99053 0.94908 0.92129 1.19631 0.79922 0.89066 0.96596 0.93494 1.86694 1.33800 1.72956 1.43484 1.21559 1.17914 1.08525 1.12267 0.91290 1.24971 0.97131 0.94833 0.95065 1.69972 1.39009 1.13758 1.30594 0.87073 0.81853 0.80376 0.81285 1.21671 1.22436 1.13338 0.94337 0.94491 0.90018 0.92537 0.93303 0.90200 0.91525 0.86942 0.86936 0.87010 0.86870 0.86514 0.94360 0.91779 0.93147 0.91490 0.95078 0.80383 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.81 6.22 -35.23 -0.22 -5.03 16 3 C 0.03 0.34 5.22 37.16 0.19 0.54 16 4 C 0.09 1.42 2.18 -67.71 -0.15 1.27 16 5 H 0.10 1.70 6.38 -51.93 -0.33 1.37 16 6 C -0.07 -0.91 4.49 -27.89 -0.13 -1.03 16 7 C -0.06 -0.89 4.95 -104.63 -0.52 -1.41 16 8 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 9 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 10 C -0.13 -1.83 10.05 -39.59 -0.40 -2.22 16 11 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 12 C -0.08 -1.23 9.31 -39.58 -0.37 -1.60 16 13 N -0.52 -8.56 3.94 -234.89 -0.92 -9.49 16 14 C 0.03 0.40 7.92 60.07 0.48 0.88 16 15 C 0.04 0.74 4.45 -3.83 -0.02 0.72 16 16 C 0.21 4.79 2.34 -27.89 -0.07 4.72 16 17 H 0.05 1.15 5.98 -51.93 -0.31 0.84 16 18 O -0.56 -13.12 10.04 -35.23 -0.35 -13.47 16 19 C -0.56 -15.68 9.34 -34.44 -0.32 -16.00 16 20 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 21 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 22 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 23 Si 0.87 22.27 26.99 -169.99 -4.59 17.69 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 26 H -0.21 -5.38 5.31 56.52 0.30 -5.08 16 27 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.06 5.73 -51.93 -0.30 0.76 16 33 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.04 0.57 6.05 -51.93 -0.31 0.25 16 40 H 0.06 0.87 5.69 -51.93 -0.30 0.57 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.32 7.99 -51.93 -0.42 0.90 16 43 H 0.03 0.62 6.21 -51.93 -0.32 0.29 16 44 H 0.35 7.45 9.04 45.56 0.41 7.86 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -31.66 352.00 -7.97 -39.63 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.51 Total: 9.09 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.46 Total: -16.90 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.15 Total: -36.31 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.57 Total: -18.50 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.59 Total: 17.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.66 -7.97 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334177719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.184 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds