Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99926 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47011 * 175.12067 * 4 3 2 6 6 C 1.52994 * 109.47510 * 55.11375 * 4 3 2 7 7 C 1.50697 * 109.47359 * 174.99989 * 6 4 3 8 8 C 1.38229 * 119.99982 * 269.72869 * 7 6 4 9 9 C 1.38245 * 119.99790 * 179.76450 * 8 7 6 10 10 C 1.38232 * 119.99956 * 0.51060 * 9 8 7 11 11 C 1.38233 * 119.99884 * 359.74241 * 10 9 8 12 12 C 1.38234 * 119.99990 * 89.99918 * 7 6 4 13 13 N 1.46903 * 109.46749 * 295.11269 * 4 3 2 14 14 C 1.46907 * 110.99975 * 53.33245 * 13 4 3 15 15 C 1.46901 * 111.00287 * 289.37582 * 13 4 3 16 16 C 1.52991 * 109.47098 * 287.80708 * 15 13 4 17 17 H 1.09003 * 109.47364 * 58.42526 * 16 15 13 18 18 O 1.42901 * 109.47143 * 298.42350 * 16 15 13 19 19 C 1.50705 * 109.47259 * 178.42549 * 16 15 13 20 20 H 1.08000 * 119.99483 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99851 * 180.02562 * 19 16 15 22 22 N 1.31524 * 119.99612 * 179.97438 * 21 19 16 23 23 Si 1.86797 * 120.00472 * 359.97438 * 21 19 16 24 24 H 1.48498 * 109.47145 * 90.00227 * 23 21 19 25 25 H 1.48498 * 109.47071 * 209.99662 * 23 21 19 26 26 H 1.48499 * 109.47169 * 330.00139 * 23 21 19 27 27 H 1.09008 * 109.47330 * 300.00213 * 1 2 3 28 28 H 1.08999 * 109.47362 * 60.00074 * 1 2 3 29 29 H 1.09000 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47080 * 59.99780 * 3 2 1 31 31 H 1.08996 * 109.46979 * 299.99698 * 3 2 1 32 32 H 1.09003 * 109.47192 * 295.00614 * 6 4 3 33 33 H 1.09005 * 109.46780 * 54.99828 * 6 4 3 34 34 H 1.07998 * 120.00086 * 359.97438 * 8 7 6 35 35 H 1.07996 * 119.99590 * 180.22862 * 9 8 7 36 36 H 1.07998 * 119.99705 * 179.72774 * 10 9 8 37 37 H 1.08001 * 120.00102 * 179.97438 * 11 10 9 38 38 H 1.08005 * 119.99932 * 0.02562 * 12 7 6 39 39 H 1.08999 * 109.46946 * 289.33513 * 14 13 4 40 40 H 1.08998 * 109.46937 * 49.33417 * 14 13 4 41 41 H 1.08997 * 109.46955 * 169.33331 * 14 13 4 42 42 H 1.08996 * 109.46844 * 167.80395 * 15 13 4 43 43 H 1.09004 * 109.47058 * 47.80750 * 15 13 4 44 44 H 0.96702 * 114.00009 * 300.00153 * 18 16 15 45 45 H 0.97003 * 119.99749 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1767 -0.0881 6 6 3.9783 0.3222 -1.1842 7 6 5.4834 0.3038 -1.2571 8 6 6.1507 1.2553 -2.0055 9 6 7.5317 1.2414 -2.0684 10 6 8.2446 0.2697 -1.3914 11 6 7.5770 -0.6850 -0.6472 12 6 6.1964 -0.6678 -0.5800 13 7 3.9776 0.5598 1.2532 14 6 3.2784 -0.7116 1.4830 15 6 3.7961 1.4732 2.3893 16 6 4.8346 2.5941 2.3133 17 1 4.7261 3.1266 1.3685 18 8 6.1468 2.0342 2.3966 19 6 4.6240 3.5525 3.4572 20 1 3.8286 3.3795 4.1670 21 6 5.4460 4.6505 3.5968 22 7 5.2618 5.4872 4.5947 23 14 6.8212 4.9500 2.3686 24 1 6.3129 5.7837 1.2498 25 1 7.9413 5.6552 3.0420 26 1 7.3028 3.6494 1.8378 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.6085 -0.6946 -1.0513 33 1 3.5748 0.7377 -2.1076 34 1 5.5935 2.0116 -2.5383 35 1 8.0532 1.9870 -2.6501 36 1 9.3232 0.2562 -1.4442 37 1 8.1339 -1.4444 -0.1187 38 1 5.6747 -1.4141 0.0008 39 1 2.2354 -0.5132 1.7300 40 1 3.3284 -1.3219 0.5812 41 1 3.7525 -1.2430 2.3081 42 1 3.9228 0.9230 3.3216 43 1 2.7948 1.9026 2.3540 44 1 6.3144 1.5447 3.2135 45 1 5.8403 6.2595 4.6932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334177719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -76.981514 kcal Electronic energy + Delta-G solvation = -25162.153870 eV Core-core repulsion = 21758.348262 eV Total energy + Delta-G solvation = -3403.805608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75841 -39.47868 -38.18078 -36.71209 -34.38439 -33.79650 -31.57002 -30.97049 -30.47697 -27.77682 -27.66602 -26.25736 -24.89062 -23.25887 -22.95944 -21.97951 -20.43732 -19.33006 -17.72593 -17.68627 -17.08975 -16.79384 -16.60394 -16.21321 -15.94656 -15.84575 -15.63971 -15.36950 -14.90293 -14.74692 -14.21643 -14.04538 -13.87620 -13.55925 -13.37852 -13.19029 -13.05192 -12.84857 -12.82976 -12.68860 -12.49466 -12.36140 -12.01478 -11.94321 -11.72036 -11.61459 -11.42263 -10.97197 -10.79184 -10.52399 -10.03999 -9.58261 -9.33705 -8.88037 -8.35247 -6.48467 0.68803 0.75130 1.37517 1.43863 1.77032 2.44397 2.80406 3.04117 3.08874 3.18937 3.87745 4.04766 4.08880 4.20054 4.22507 4.27688 4.34327 4.41333 4.46318 4.49774 4.55280 4.58013 4.59041 4.67719 4.79641 4.83805 4.86256 4.86799 4.99133 5.03893 5.10665 5.14940 5.33283 5.38526 5.42191 5.51204 5.53653 5.76742 5.81980 5.96449 6.10237 6.16194 6.30387 6.37357 6.38853 6.64646 7.25686 7.43081 8.79071 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.007459 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.001199 B = 3753.168536 C = 5552.492610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.033 3.967 4 C 0.091 3.909 5 H 0.074 0.926 6 C -0.056 4.056 7 C -0.072 4.072 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.139 4.139 11 C -0.131 4.131 12 C -0.095 4.095 13 N -0.519 5.519 14 C 0.035 3.965 15 C 0.053 3.947 16 C 0.217 3.783 17 H 0.041 0.959 18 O -0.568 6.568 19 C -0.563 4.563 20 H 0.035 0.965 21 C 0.032 3.968 22 N -0.941 5.941 23 Si 0.934 3.066 24 H -0.287 1.287 25 H -0.299 1.299 26 H -0.205 1.205 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.024 0.976 44 H 0.361 0.639 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -14.038 -14.732 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C -0.045 4.045 4 C -0.018 4.018 5 H 0.092 0.908 6 C -0.093 4.093 7 C -0.072 4.072 8 C -0.156 4.156 9 C -0.154 4.154 10 C -0.157 4.157 11 C -0.149 4.149 12 C -0.113 4.113 13 N -0.242 5.242 14 C -0.112 4.112 15 C -0.075 4.075 16 C 0.159 3.841 17 H 0.058 0.942 18 O -0.373 6.373 19 C -0.601 4.601 20 H 0.053 0.947 21 C -0.168 4.168 22 N -0.580 5.580 23 Si 0.759 3.241 24 H -0.214 1.214 25 H -0.226 1.226 26 H -0.127 1.127 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.207 0.793 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.713 -13.918 -15.283 20.848 hybrid contribution -0.788 1.194 0.950 1.717 sum -3.501 -12.724 -14.333 19.483 Atomic orbital electron populations 1.22872 0.80692 1.03628 1.00144 1.88038 1.20413 1.26903 1.95124 1.23193 0.95219 0.85553 1.00560 1.21842 0.90338 0.98492 0.91116 0.90781 1.20517 0.90842 1.01292 0.96694 1.19836 0.95886 0.95126 0.96357 1.21225 0.94914 0.98968 1.00466 1.21299 0.94459 0.99126 1.00550 1.21306 1.00393 0.95717 0.98268 1.21326 0.94835 0.99524 0.99206 1.21023 0.94006 0.98685 0.97597 1.62095 1.56650 1.04375 1.01058 1.22477 0.96306 0.90904 1.01520 1.22499 0.97299 0.94309 0.93414 1.19380 0.81085 0.89468 0.94171 0.94155 1.86632 1.33536 1.73030 1.44100 1.21899 1.16347 1.09260 1.12637 0.94659 1.25773 0.99560 0.94826 0.96623 1.70089 1.40532 1.14736 1.32664 0.86056 0.78898 0.80227 0.78958 1.21381 1.22637 1.12710 0.94782 0.93248 0.88147 0.94455 0.91588 0.89652 0.89868 0.85784 0.85310 0.85161 0.85255 0.86098 0.94501 0.90417 0.92972 0.91870 0.95762 0.79269 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.39 -8.94 6.22 -148.98 -0.93 -9.87 16 3 C 0.03 0.85 5.22 71.98 0.38 1.23 16 4 C 0.09 2.66 2.18 44.91 0.10 2.75 16 5 H 0.07 2.52 6.38 -2.39 -0.02 2.51 16 6 C -0.06 -1.39 4.49 29.84 0.13 -1.25 16 7 C -0.07 -2.02 4.95 -19.87 -0.10 -2.11 16 8 C -0.14 -3.84 9.70 22.27 0.22 -3.63 16 9 C -0.14 -3.70 10.05 22.27 0.22 -3.48 16 10 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 11 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 12 C -0.10 -2.66 9.31 22.27 0.21 -2.46 16 13 N -0.52 -16.51 3.94 -897.05 -3.53 -20.04 16 14 C 0.04 0.96 7.92 127.69 1.01 1.97 16 15 C 0.05 2.05 4.45 86.30 0.38 2.43 16 16 C 0.22 10.02 2.34 29.85 0.07 10.09 16 17 H 0.04 1.95 5.98 -2.39 -0.01 1.94 16 18 O -0.57 -25.60 10.04 -148.98 -1.50 -27.09 16 19 C -0.56 -31.73 9.34 25.60 0.24 -31.49 16 20 H 0.04 2.18 7.99 -2.91 -0.02 2.16 16 21 C 0.03 1.85 5.47 84.65 0.46 2.32 16 22 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 23 Si 0.93 46.32 26.99 68.60 1.85 48.17 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 26 H -0.21 -9.90 5.31 99.48 0.53 -9.37 16 27 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.10 6.36 -2.39 -0.02 1.09 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 2.02 5.73 -2.39 -0.01 2.01 16 33 H 0.08 1.78 8.08 -2.38 -0.02 1.76 16 34 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.04 1.02 6.05 -2.39 -0.01 1.01 16 40 H 0.08 1.91 5.69 -2.39 -0.01 1.90 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 2.47 7.99 -2.39 -0.02 2.45 16 43 H 0.02 0.97 6.21 -2.39 -0.01 0.95 16 44 H 0.36 14.86 9.04 -74.06 -0.67 14.19 16 45 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -67.21 352.00 1.34 -65.87 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.12 Total: 30.40 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 5.02 Total: -28.76 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.23 Total: -78.72 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -2.42 Total: -36.96 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.85 Total: 48.17 kcal Total: -67.21 1.34 -65.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334177719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.113 kcal (2) G-P(sol) polarization free energy of solvation -67.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds