Wall clock time and date at job start Tue Mar 31 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99749 * 2 1 4 4 H 1.48506 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47073 * 300.00218 * 3 2 1 6 6 H 1.48496 * 109.46999 * 60.00349 * 3 2 1 7 7 C 1.37874 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99847 * 174.22967 * 7 2 1 9 9 C 1.50701 * 120.00222 * 354.22465 * 7 2 1 10 10 C 1.53003 * 115.55977 * 80.46930 * 9 7 2 11 11 N 1.46498 * 109.47097 * 39.97312 * 10 9 7 12 12 C 1.34776 * 120.00257 * 186.35017 * 11 10 9 13 13 O 1.21585 * 119.99628 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00304 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99645 * 180.02562 * 14 12 11 16 16 C 1.53950 * 113.57882 * 254.23883 * 15 14 12 17 17 C 1.53065 * 86.72916 * 220.69461 * 16 15 14 18 18 C 1.52910 * 121.17390 * 150.58570 * 17 16 15 19 19 C 1.53950 * 86.78073 * 100.75511 * 18 17 16 20 20 N 1.46901 * 113.58271 * 139.33604 * 19 18 17 21 21 C 1.52906 * 121.07182 * 259.12326 * 17 16 15 22 22 C 1.52913 * 88.06874 * 24.83580 * 17 16 15 23 23 C 1.52993 * 117.49858 * 294.78050 * 9 7 2 24 24 C 1.53000 * 60.03386 * 252.51894 * 23 9 7 25 25 H 0.96995 * 120.00612 * 5.02114 * 1 2 3 26 26 H 1.08993 * 109.47003 * 159.97129 * 10 9 7 27 27 H 1.08998 * 109.47114 * 279.97430 * 10 9 7 28 28 H 0.97007 * 120.00113 * 6.35586 * 11 10 9 29 29 H 0.96996 * 119.99705 * 0.02562 * 14 12 11 30 30 H 1.08993 * 112.82740 * 25.33870 * 15 14 12 31 31 H 1.09005 * 113.66361 * 335.14744 * 16 15 14 32 32 H 1.08998 * 113.65803 * 106.19532 * 16 15 14 33 33 H 1.09003 * 113.66110 * 215.22562 * 18 17 16 34 34 H 1.08997 * 113.66487 * 346.28570 * 18 17 16 35 35 H 1.08998 * 113.65020 * 270.11393 * 19 18 17 36 36 H 1.00902 * 111.00065 * 82.27777 * 20 19 18 37 37 H 1.00899 * 111.00229 * 206.23396 * 20 19 18 38 38 H 1.09006 * 113.66138 * 13.63489 * 21 17 16 39 39 H 1.09005 * 113.66544 * 144.59050 * 21 17 16 40 40 H 1.09001 * 113.65969 * 220.69274 * 22 17 16 41 41 H 1.09004 * 113.74517 * 89.64807 * 22 17 16 42 42 H 1.09006 * 117.49924 * 145.02137 * 23 9 7 43 43 H 1.08996 * 117.49980 * 0.02562 * 23 9 7 44 44 H 1.09006 * 117.49375 * 107.47746 * 24 23 9 45 45 H 1.08999 * 117.50252 * 252.47802 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0946 9 6 1.2568 -2.4959 0.1302 10 6 0.6132 -3.0195 -1.1553 11 7 1.5202 -2.7922 -2.2832 12 6 1.1120 -3.0568 -3.5401 13 8 -0.0091 -3.4837 -3.7380 14 7 1.9462 -2.8472 -4.5777 15 6 1.5022 -3.1343 -5.9440 16 6 2.1205 -4.4136 -6.5364 17 6 2.2598 -3.6346 -7.8465 18 6 3.3801 -3.9485 -8.8388 19 6 2.3271 -4.7270 -9.6482 20 7 2.4416 -4.5348 -11.1000 21 6 1.2637 -3.8292 -8.9902 22 6 2.2733 -2.3482 -7.0200 23 6 0.5223 -2.7596 1.4461 24 6 1.8037 -3.5288 1.1187 25 1 -0.4851 0.8367 -0.0735 26 1 0.4184 -4.0872 -1.0553 27 1 -0.3252 -2.4939 -1.3321 28 1 2.4145 -2.4513 -2.1253 29 1 2.8405 -2.5062 -4.4199 30 1 0.4195 -3.0805 -6.0568 31 1 3.0749 -4.6872 -6.0864 32 1 1.4234 -5.2495 -6.5955 33 1 3.7664 -3.0695 -9.3549 34 1 4.1673 -4.5786 -8.4249 35 1 2.2468 -5.7767 -9.3658 36 1 3.1477 -5.1408 -11.4904 37 1 1.5521 -4.6762 -11.5548 38 1 0.3601 -4.3639 -8.6970 39 1 1.0538 -2.9163 -9.5477 40 1 1.6981 -1.5362 -7.4650 41 1 3.2701 -2.0388 -6.7056 42 1 -0.4195 -3.3062 1.3961 43 1 0.5795 -1.9913 2.2172 44 1 2.7042 -3.2662 1.6742 45 1 1.7051 -4.5815 0.8536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336890887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:55 Heat of formation + Delta-G solvation = 30.495861 kcal Electronic energy + Delta-G solvation = -23466.544477 eV Core-core repulsion = 20099.692189 eV Total energy + Delta-G solvation = -3366.852288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76419 -39.00847 -36.81261 -35.96499 -33.18464 -32.67306 -32.00924 -30.54482 -26.15317 -26.02551 -25.88598 -25.19291 -22.81031 -21.16535 -20.51969 -20.14597 -19.36944 -18.14664 -17.44242 -16.44368 -16.18593 -15.92642 -15.57084 -15.28569 -14.79110 -14.50264 -14.29918 -13.86236 -13.53334 -13.14443 -12.89335 -12.82303 -12.61235 -12.38905 -12.19764 -11.91784 -11.58642 -11.36077 -11.04117 -10.98918 -10.88436 -10.62725 -10.53023 -10.28995 -10.23043 -10.12759 -9.67467 -9.40166 -9.05035 -8.93007 -8.66663 -8.51719 -8.25658 -7.77214 -6.08489 -4.17672 3.23189 3.32719 3.33828 3.39575 3.90627 4.10774 4.27213 4.33621 4.42366 4.48142 4.57406 4.76212 4.91271 5.02675 5.10799 5.22944 5.34220 5.46059 5.56519 5.63009 5.68559 5.71459 5.77454 5.84310 5.92456 6.07509 6.10292 6.23137 6.32789 6.35864 6.52061 6.61541 6.73834 6.87574 6.93924 6.98823 7.07798 7.10321 7.38299 7.42378 7.53935 7.74336 7.80359 8.34765 8.82097 8.87089 9.37895 9.49447 10.99353 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022711 B = 0.003145 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.578249 B = 8900.448531 C = 9586.575479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.184 3.816 11 N -0.712 5.712 12 C 0.697 3.303 13 O -0.609 6.609 14 N -0.743 5.743 15 C 0.151 3.849 16 C -0.129 4.129 17 C -0.103 4.103 18 C -0.110 4.110 19 C 0.058 3.942 20 N -0.841 5.841 21 C -0.109 4.109 22 C -0.131 4.131 23 C -0.156 4.156 24 C -0.211 4.211 25 H 0.261 0.739 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.399 0.601 29 H 0.393 0.607 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.339 0.661 37 H 0.340 0.660 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -7.717 -16.727 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.029 3.971 10 C 0.060 3.940 11 N -0.364 5.364 12 C 0.397 3.603 13 O -0.489 6.489 14 N -0.398 5.398 15 C 0.045 3.955 16 C -0.168 4.168 17 C -0.104 4.104 18 C -0.148 4.148 19 C -0.053 4.053 20 N -0.370 5.370 21 C -0.146 4.146 22 C -0.169 4.169 23 C -0.195 4.195 24 C -0.248 4.248 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.234 0.766 29 H 0.227 0.773 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.291 -7.229 -16.590 18.854 hybrid contribution 0.914 0.280 0.138 0.966 sum 6.205 -6.949 -16.452 18.906 Atomic orbital electron populations 1.69980 1.05904 1.26788 1.47770 1.24979 0.94748 0.98859 0.94224 0.86610 0.80155 0.83987 0.77667 1.19702 1.21064 1.20966 1.20320 0.92639 0.88536 1.52473 0.92161 1.19071 0.97860 0.93629 0.86496 1.20681 0.92614 0.96233 0.84518 1.45074 1.18743 1.68572 1.04029 1.16100 0.84230 0.78941 0.81003 1.90838 1.19755 1.53661 1.84689 1.45095 1.17170 1.72284 1.05267 1.22167 0.99836 0.94294 0.79247 1.23283 1.01626 0.97994 0.93904 1.22093 0.97834 0.97790 0.92703 1.22828 0.95757 1.00347 0.95890 1.22823 0.98248 0.96907 0.87316 1.58886 1.12240 1.62212 1.03698 1.22785 0.96213 1.00190 0.95450 1.23189 1.01079 0.96563 0.96061 1.22536 0.93076 1.01583 1.02260 1.23072 0.97971 0.95680 1.08078 0.92908 0.95199 0.91336 0.76634 0.77295 0.87122 0.89578 0.91164 0.89144 0.91755 0.92246 0.84942 0.84709 0.91290 0.88970 0.90749 0.89461 0.91648 0.90017 0.90470 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 13.11 55.43 0.73 -23.39 16 2 C 0.08 2.01 5.42 -17.82 -0.10 1.92 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.69 7.51 -34.44 -0.26 -12.95 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.71 1.63 -155.62 -0.25 0.46 16 10 C 0.18 4.28 5.76 -4.04 -0.02 4.25 16 11 N -0.71 -14.76 5.28 -65.23 -0.34 -15.10 16 12 C 0.70 14.15 8.57 -86.91 -0.74 13.41 16 13 O -0.61 -14.63 15.94 5.29 0.08 -14.55 16 14 N -0.74 -11.36 5.36 -57.72 -0.31 -11.67 16 15 C 0.15 2.01 4.21 -66.95 -0.28 1.73 16 16 C -0.13 -1.44 7.65 -26.20 -0.20 -1.64 16 17 C -0.10 -0.98 1.11 -154.63 -0.17 -1.15 16 18 C -0.11 -0.95 7.64 -26.28 -0.20 -1.15 16 19 C 0.06 0.47 4.96 -66.73 -0.33 0.14 16 20 N -0.84 -5.98 9.57 -3.84 -0.04 -6.02 16 21 C -0.11 -0.97 7.63 -26.29 -0.20 -1.17 16 22 C -0.13 -1.36 7.59 -26.28 -0.20 -1.56 16 23 C -0.16 -3.58 9.71 -26.73 -0.26 -3.84 16 24 C -0.21 -4.41 9.89 -26.69 -0.26 -4.68 16 25 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 26 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 27 H 0.07 1.83 8.12 -51.93 -0.42 1.41 16 28 H 0.40 7.69 7.61 -40.82 -0.31 7.38 16 29 H 0.39 5.02 8.72 -40.82 -0.36 4.67 16 30 H 0.11 1.72 7.50 -51.93 -0.39 1.34 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.34 1.94 9.08 -39.29 -0.36 1.58 16 37 H 0.34 2.02 9.07 -39.29 -0.36 1.67 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 42 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 44 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -30.20 369.35 -10.46 -40.66 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -7.64 Total: 15.45 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.49 Total: -6.24 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.04 Total: -56.18 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.20 -10.46 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336890887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.159 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds