Wall clock time and date at job start Tue Mar 31 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99749 * 2 1 4 4 H 1.48506 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47073 * 300.00218 * 3 2 1 6 6 H 1.48496 * 109.46999 * 60.00349 * 3 2 1 7 7 C 1.37874 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99847 * 174.22967 * 7 2 1 9 9 C 1.50701 * 120.00222 * 354.22465 * 7 2 1 10 10 C 1.53003 * 115.55977 * 80.46930 * 9 7 2 11 11 N 1.46498 * 109.47097 * 39.97312 * 10 9 7 12 12 C 1.34776 * 120.00257 * 186.35017 * 11 10 9 13 13 O 1.21585 * 119.99628 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00304 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99645 * 180.02562 * 14 12 11 16 16 C 1.53950 * 113.57882 * 254.23883 * 15 14 12 17 17 C 1.53065 * 86.72916 * 220.69461 * 16 15 14 18 18 C 1.52910 * 121.17390 * 150.58570 * 17 16 15 19 19 C 1.53950 * 86.78073 * 100.75511 * 18 17 16 20 20 N 1.46901 * 113.58271 * 139.33604 * 19 18 17 21 21 C 1.52906 * 121.07182 * 259.12326 * 17 16 15 22 22 C 1.52913 * 88.06874 * 24.83580 * 17 16 15 23 23 C 1.52993 * 117.49858 * 294.78050 * 9 7 2 24 24 C 1.53000 * 60.03386 * 252.51894 * 23 9 7 25 25 H 0.96995 * 120.00612 * 5.02114 * 1 2 3 26 26 H 1.08993 * 109.47003 * 159.97129 * 10 9 7 27 27 H 1.08998 * 109.47114 * 279.97430 * 10 9 7 28 28 H 0.97007 * 120.00113 * 6.35586 * 11 10 9 29 29 H 0.96996 * 119.99705 * 0.02562 * 14 12 11 30 30 H 1.08993 * 112.82740 * 25.33870 * 15 14 12 31 31 H 1.09005 * 113.66361 * 335.14744 * 16 15 14 32 32 H 1.08998 * 113.65803 * 106.19532 * 16 15 14 33 33 H 1.09003 * 113.66110 * 215.22562 * 18 17 16 34 34 H 1.08997 * 113.66487 * 346.28570 * 18 17 16 35 35 H 1.08998 * 113.65020 * 270.11393 * 19 18 17 36 36 H 1.00902 * 111.00065 * 82.27777 * 20 19 18 37 37 H 1.00899 * 111.00229 * 206.23396 * 20 19 18 38 38 H 1.09006 * 113.66138 * 13.63489 * 21 17 16 39 39 H 1.09005 * 113.66544 * 144.59050 * 21 17 16 40 40 H 1.09001 * 113.65969 * 220.69274 * 22 17 16 41 41 H 1.09004 * 113.74517 * 89.64807 * 22 17 16 42 42 H 1.09006 * 117.49924 * 145.02137 * 23 9 7 43 43 H 1.08996 * 117.49980 * 0.02562 * 23 9 7 44 44 H 1.09006 * 117.49375 * 107.47746 * 24 23 9 45 45 H 1.08999 * 117.50252 * 252.47802 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0946 9 6 1.2568 -2.4959 0.1302 10 6 0.6132 -3.0195 -1.1553 11 7 1.5202 -2.7922 -2.2832 12 6 1.1120 -3.0568 -3.5401 13 8 -0.0091 -3.4837 -3.7380 14 7 1.9462 -2.8472 -4.5777 15 6 1.5022 -3.1343 -5.9440 16 6 2.1205 -4.4136 -6.5364 17 6 2.2598 -3.6346 -7.8465 18 6 3.3801 -3.9485 -8.8388 19 6 2.3271 -4.7270 -9.6482 20 7 2.4416 -4.5348 -11.1000 21 6 1.2637 -3.8292 -8.9902 22 6 2.2733 -2.3482 -7.0200 23 6 0.5223 -2.7596 1.4461 24 6 1.8037 -3.5288 1.1187 25 1 -0.4851 0.8367 -0.0735 26 1 0.4184 -4.0872 -1.0553 27 1 -0.3252 -2.4939 -1.3321 28 1 2.4145 -2.4513 -2.1253 29 1 2.8405 -2.5062 -4.4199 30 1 0.4195 -3.0805 -6.0568 31 1 3.0749 -4.6872 -6.0864 32 1 1.4234 -5.2495 -6.5955 33 1 3.7664 -3.0695 -9.3549 34 1 4.1673 -4.5786 -8.4249 35 1 2.2468 -5.7767 -9.3658 36 1 3.1477 -5.1408 -11.4904 37 1 1.5521 -4.6762 -11.5548 38 1 0.3601 -4.3639 -8.6970 39 1 1.0538 -2.9163 -9.5477 40 1 1.6981 -1.5362 -7.4650 41 1 3.2701 -2.0388 -6.7056 42 1 -0.4195 -3.3062 1.3961 43 1 0.5795 -1.9913 2.2172 44 1 2.7042 -3.2662 1.6742 45 1 1.7051 -4.5815 0.8536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336890887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:55 Heat of formation + Delta-G solvation = 9.713015 kcal Electronic energy + Delta-G solvation = -23467.445689 eV Core-core repulsion = 20099.692189 eV Total energy + Delta-G solvation = -3367.753500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70175 -40.50112 -38.52061 -37.01299 -34.88839 -34.01152 -33.83067 -31.38508 -27.95701 -27.07691 -26.78158 -26.72451 -23.86209 -22.92492 -21.71989 -21.34257 -21.21172 -19.27175 -18.71825 -18.06403 -17.31844 -16.86365 -16.64415 -16.37731 -16.25850 -16.06460 -15.83618 -15.43005 -14.90005 -14.47875 -14.18495 -14.03548 -13.73599 -13.60598 -13.46099 -13.29097 -12.95600 -12.91129 -12.82127 -12.35348 -12.30237 -12.00139 -11.78130 -11.50159 -11.45536 -11.14742 -11.10258 -10.91978 -10.81479 -10.45890 -10.20370 -9.96517 -9.61276 -9.44231 -8.07899 -6.21520 1.41824 1.46241 1.55070 1.95510 2.31948 2.43468 3.19923 3.38182 3.40661 3.49282 3.60725 3.70039 3.75780 3.90185 3.94780 4.01917 4.29622 4.41837 4.44726 4.55612 4.70827 4.77275 4.79361 4.81175 4.89123 4.96700 5.01569 5.01641 5.03582 5.04696 5.10067 5.27107 5.29879 5.40538 5.51414 5.52696 5.63469 5.72580 5.78951 5.84959 6.26607 6.32833 6.39771 6.62427 6.86552 7.34334 7.48522 7.78216 8.99715 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022711 B = 0.003145 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.578249 B = 8900.448531 C = 9586.575479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.949 3.051 4 H -0.258 1.258 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.006 3.994 10 C 0.198 3.802 11 N -0.709 5.709 12 C 0.693 3.307 13 O -0.651 6.651 14 N -0.724 5.724 15 C 0.133 3.867 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.103 4.103 19 C 0.064 3.936 20 N -0.846 5.846 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.167 4.167 24 C -0.178 4.178 25 H 0.257 0.743 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.407 0.593 29 H 0.409 0.591 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.348 0.652 37 H 0.347 0.653 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 -8.103 -17.847 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.181 1.181 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.005 3.995 10 C 0.073 3.927 11 N -0.362 5.362 12 C 0.393 3.607 13 O -0.535 6.535 14 N -0.379 5.379 15 C 0.028 3.972 16 C -0.159 4.159 17 C -0.097 4.097 18 C -0.141 4.141 19 C -0.048 4.048 20 N -0.377 5.377 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.206 4.206 24 C -0.215 4.215 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.243 0.757 29 H 0.245 0.755 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.894 -7.616 -17.744 20.861 hybrid contribution 0.104 0.361 0.459 0.593 sum 7.999 -7.255 -17.285 20.381 Atomic orbital electron populations 1.70123 1.07423 1.27107 1.49632 1.25688 0.95306 1.01988 0.94300 0.85653 0.79697 0.80182 0.76951 1.18128 1.21482 1.21542 1.20607 0.92965 0.89185 1.51021 0.91521 1.19139 0.99057 0.94457 0.86840 1.20339 0.91307 0.95738 0.85335 1.44902 1.18643 1.68862 1.03819 1.16308 0.84177 0.78659 0.81581 1.90807 1.21829 1.55533 1.85297 1.44983 1.17092 1.71009 1.04852 1.22392 0.98960 0.97201 0.78677 1.23211 1.01532 0.96676 0.94523 1.21996 0.98923 0.96473 0.92306 1.22785 0.95582 1.00481 0.95283 1.22739 0.97345 0.96726 0.87971 1.58858 1.13022 1.62617 1.03165 1.22810 0.96256 1.00461 0.95433 1.23169 1.01232 0.96784 0.94537 1.22484 0.94545 1.02032 1.01512 1.23073 0.96935 0.96155 1.05329 0.93430 0.94680 0.95744 0.75685 0.75487 0.89962 0.88544 0.91953 0.89161 0.90953 0.92043 0.83931 0.83972 0.91850 0.89010 0.90699 0.87860 0.91214 0.91773 0.89518 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.31 13.11 21.45 0.28 -51.03 16 2 C 0.03 1.48 5.42 84.65 0.46 1.94 16 3 Si 0.95 41.51 29.54 68.60 2.03 43.54 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.50 -24.89 7.51 25.60 0.19 -24.70 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.01 0.27 1.63 -52.90 -0.09 0.19 16 10 C 0.20 9.33 5.76 86.38 0.50 9.83 16 11 N -0.71 -29.30 5.28 -478.54 -2.53 -31.83 16 12 C 0.69 28.29 8.57 179.05 1.53 29.82 16 13 O -0.65 -32.19 15.94 -3.98 -0.06 -32.25 16 14 N -0.72 -21.57 5.36 -454.77 -2.44 -24.01 16 15 C 0.13 3.49 4.21 45.63 0.19 3.68 16 16 C -0.12 -2.52 7.65 30.94 0.24 -2.29 16 17 C -0.10 -1.66 1.11 -52.26 -0.06 -1.72 16 18 C -0.10 -1.52 7.64 30.89 0.24 -1.28 16 19 C 0.06 0.91 4.96 45.55 0.23 1.13 16 20 N -0.85 -10.28 9.57 -166.05 -1.59 -11.87 16 21 C -0.11 -1.87 7.63 30.88 0.24 -1.63 16 22 C -0.12 -2.28 7.59 30.89 0.23 -2.05 16 23 C -0.17 -7.64 9.71 30.59 0.30 -7.34 16 24 C -0.18 -7.08 9.89 30.62 0.30 -6.78 16 25 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 26 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 27 H 0.02 1.35 8.12 -2.39 -0.02 1.33 16 28 H 0.41 15.27 7.61 -92.70 -0.71 14.56 16 29 H 0.41 9.68 8.72 -92.71 -0.81 8.87 16 30 H 0.08 2.65 7.50 -2.39 -0.02 2.64 16 31 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.35 3.22 9.08 -89.69 -0.81 2.40 16 37 H 0.35 3.51 9.07 -89.70 -0.81 2.69 16 38 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.68 8.11 -2.38 -0.02 1.66 16 42 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 43 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 45 H 0.09 3.15 8.09 -2.39 -0.02 3.13 16 Total: -1.00 -65.44 369.35 -1.94 -67.37 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: -2.12 Total: 41.27 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.50 Total: -1.20 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -6.27 Total: -118.74 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.06 Total: -32.25 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -65.44 -1.94 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336890887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.087 kcal (2) G-P(sol) polarization free energy of solvation -65.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds