Wall clock time and date at job start Tue Mar 31 2020 06:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46737 * 2 1 4 4 C 1.50696 * 109.47182 * 120.00199 * 2 1 3 5 5 H 1.08002 * 119.99772 * 120.00358 * 4 2 1 6 6 C 1.37877 * 120.00205 * 299.99827 * 4 2 1 7 7 N 1.31515 * 119.99576 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46961 * 60.00319 * 8 6 4 10 10 H 1.48499 * 109.46868 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46907 * 300.00136 * 8 6 4 12 12 N 1.46500 * 109.46973 * 240.00370 * 2 1 3 13 13 C 1.46498 * 120.00281 * 294.17910 * 12 2 1 14 14 C 1.34779 * 120.00055 * 114.18028 * 12 2 1 15 15 O 1.21283 * 120.00132 * 183.74880 * 14 12 2 16 16 C 1.50858 * 119.99905 * 3.75277 * 14 12 2 17 17 C 1.52832 * 109.15251 * 69.32747 * 16 14 12 18 18 C 1.53383 * 109.70625 * 180.90569 * 17 16 14 19 19 H 1.09109 * 111.03008 * 119.07963 * 18 17 16 20 20 C 1.53392 * 108.90063 * 241.62203 * 18 17 16 21 21 C 1.52693 * 110.11928 * 59.53649 * 20 18 17 22 22 C 1.52693 * 111.09702 * 59.69556 * 21 20 18 23 23 C 1.53408 * 110.07500 * 300.26392 * 22 21 20 24 24 H 1.09106 * 111.02440 * 178.02092 * 23 22 21 25 25 C 1.52806 * 109.15220 * 190.60447 * 16 14 12 26 26 C 1.52062 * 107.33008 * 56.59724 * 23 22 21 27 27 O 1.20708 * 122.48645 * 121.35282 * 26 23 22 28 28 H 1.08995 * 109.47279 * 299.99677 * 1 2 3 29 29 H 1.09003 * 109.47545 * 59.99899 * 1 2 3 30 30 H 1.09005 * 109.46455 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99947 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47377 * 264.91324 * 13 12 2 33 33 H 1.08998 * 109.46851 * 24.91165 * 13 12 2 34 34 H 1.09003 * 109.47628 * 144.90840 * 13 12 2 35 35 H 1.09074 * 108.90557 * 309.96711 * 16 14 12 36 36 H 1.08895 * 109.74238 * 59.99116 * 17 16 14 37 37 H 1.09288 * 109.17573 * 300.59786 * 17 16 14 38 38 H 1.09160 * 109.42437 * 179.85156 * 20 18 17 39 39 H 1.09170 * 109.41977 * 299.22301 * 20 18 17 40 40 H 1.08873 * 109.79886 * 298.03176 * 21 20 18 41 41 H 1.09471 * 108.84058 * 179.52094 * 21 20 18 42 42 H 1.09167 * 109.43641 * 179.97438 * 22 21 20 43 43 H 1.09162 * 109.44060 * 60.55936 * 22 21 20 44 44 H 1.09288 * 109.17181 * 59.35403 * 25 16 14 45 45 H 1.08878 * 109.75896 * 299.96026 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1190 4.0075 10 1 1.8271 -0.4201 5.2203 11 1 1.8282 -2.5200 4.0079 12 7 2.0183 -0.6905 -1.1962 13 6 1.7726 -2.1248 -1.3658 14 6 2.6937 -0.0063 -2.1408 15 8 3.0387 -0.5622 -3.1621 16 6 3.0206 1.4509 -1.9278 17 6 4.0659 1.5734 -0.8196 18 6 4.3913 3.0526 -0.5767 19 1 4.1472 3.3444 0.4459 20 6 5.8765 3.2905 -0.8774 21 6 6.1841 2.9242 -2.3274 22 6 5.3521 3.7631 -3.2946 23 6 3.8570 3.5326 -3.0397 24 1 3.2474 4.1516 -3.6998 25 6 3.5431 2.0439 -3.2356 26 6 3.5896 3.8665 -1.5805 27 8 2.7992 4.7145 -1.2438 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 0.7088 1.1612 3.4843 32 1 2.6359 -2.6861 -1.0085 33 1 0.8903 -2.4123 -0.7939 34 1 1.6085 -2.3432 -2.4210 35 1 2.1129 1.9767 -1.6290 36 1 4.9691 1.0361 -1.1048 37 1 3.6675 1.1365 0.0996 38 1 6.1169 4.3420 -0.7097 39 1 6.4847 2.6760 -0.2108 40 1 5.9846 1.8664 -2.4909 41 1 7.2454 3.1096 -2.5214 42 1 5.5932 3.4801 -4.3210 43 1 5.5859 4.8199 -3.1526 44 1 2.7788 1.9358 -4.0092 45 1 4.4407 1.5127 -3.5479 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339161083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:04 Heat of formation + Delta-G solvation = -90.378356 kcal Electronic energy + Delta-G solvation = -25777.106281 eV Core-core repulsion = 22372.719742 eV Total energy + Delta-G solvation = -3404.386539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08291 -38.97604 -36.97247 -35.63889 -33.24966 -32.77502 -32.62803 -29.21732 -28.35589 -26.32737 -25.75696 -25.31453 -22.55746 -21.73187 -21.65749 -21.09050 -18.21315 -17.37848 -16.82377 -16.44224 -16.23960 -15.44830 -14.91675 -14.84993 -14.62132 -14.30651 -13.92404 -13.72697 -13.37838 -12.98759 -12.86578 -12.74132 -12.66989 -12.30375 -12.01653 -11.74868 -11.64340 -11.38661 -11.13971 -11.07338 -11.00833 -10.92433 -10.87576 -10.75306 -10.50575 -10.44452 -10.27216 -10.13997 -10.05588 -9.36387 -8.96044 -8.88628 -8.57001 -7.66438 -6.20544 -4.30061 2.20435 3.20577 3.26659 3.26894 3.32392 3.88853 4.16031 4.28963 4.64321 4.73537 4.78674 4.99492 5.07961 5.09883 5.12412 5.21350 5.26706 5.43089 5.59362 5.65510 5.72314 5.78142 5.83780 5.86894 5.94595 6.05137 6.09369 6.16454 6.22831 6.24044 6.32003 6.41936 6.43510 6.52635 6.56451 6.68165 6.73248 6.94596 7.15059 7.37715 7.63024 7.71741 7.81301 8.07586 8.42772 8.71489 8.96290 9.38589 10.83914 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.006213 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.411015 B = 4505.720076 C = 5217.267132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.248 3.752 3 H 0.060 0.940 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.590 5.590 13 C 0.099 3.901 14 C 0.514 3.486 15 O -0.574 6.574 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.131 4.131 19 H 0.103 0.897 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.105 4.105 23 C -0.137 4.137 24 H 0.096 0.904 25 C -0.088 4.088 26 C 0.373 3.627 27 O -0.454 6.454 28 H 0.095 0.905 29 H 0.011 0.989 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.744 3.932 -7.582 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.044 4.044 14 C 0.302 3.698 15 O -0.456 6.456 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.151 4.151 19 H 0.121 0.879 20 C -0.144 4.144 21 C -0.167 4.167 22 C -0.142 4.142 23 C -0.156 4.156 24 H 0.114 0.886 25 C -0.126 4.126 26 C 0.248 3.752 27 O -0.327 6.327 28 H 0.114 0.886 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.386 4.199 -7.746 11.497 hybrid contribution 0.126 -0.545 1.054 1.193 sum 7.512 3.654 -6.693 10.704 Atomic orbital electron populations 1.22158 0.98253 0.99870 1.00882 1.19212 0.91385 0.93716 0.80923 0.92280 1.21242 1.32303 1.13448 0.89941 0.91976 1.24883 0.94722 0.94892 0.98973 1.69851 1.35749 1.22401 1.24193 0.86572 0.79264 0.79768 0.81959 1.20134 1.21156 1.20189 1.48269 1.53061 1.09148 1.21447 1.21335 1.00980 0.81663 1.00465 1.20368 0.78052 0.88465 0.82929 1.90582 1.55535 1.71161 1.28320 1.21321 1.00384 0.94556 0.97003 1.21818 0.98807 0.93941 1.00102 1.22271 0.96048 0.96609 1.00124 0.87853 1.21587 0.94145 1.01798 0.96913 1.21590 0.99469 1.01355 0.94240 1.21567 0.92332 1.00227 1.00108 1.22336 0.98518 0.98815 0.95957 0.88552 1.21479 1.02912 0.91758 0.96448 1.25161 0.78516 0.79168 0.92354 1.90372 1.29797 1.28609 1.83882 0.88644 0.96984 0.94828 0.92406 0.93698 0.91078 0.92671 0.89020 0.90569 0.87418 0.91890 0.90545 0.90431 0.91626 0.90739 0.91857 0.91086 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.04 37.16 0.34 -3.13 16 2 C 0.25 5.64 1.69 -69.08 -0.12 5.52 16 3 H 0.06 1.40 4.38 -51.93 -0.23 1.17 16 4 C -0.53 -13.02 7.92 -34.44 -0.27 -13.30 16 5 H 0.06 1.54 7.44 -52.49 -0.39 1.15 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -23.03 11.32 55.43 0.63 -22.40 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.59 -12.32 2.75 -175.19 -0.48 -12.80 16 13 C 0.10 1.89 9.35 59.85 0.56 2.45 16 14 C 0.51 10.34 6.93 -10.91 -0.08 10.26 16 15 O -0.57 -12.42 15.60 5.56 0.09 -12.34 16 16 C -0.11 -1.93 1.34 -91.88 -0.12 -2.06 16 17 C -0.11 -1.79 4.32 -26.62 -0.11 -1.90 16 18 C -0.13 -1.93 3.58 -90.69 -0.32 -2.26 16 19 H 0.10 1.63 8.15 -51.87 -0.42 1.21 16 20 C -0.11 -1.22 5.23 -26.69 -0.14 -1.36 16 21 C -0.13 -1.33 5.29 -27.05 -0.14 -1.47 16 22 C -0.10 -1.08 5.24 -26.68 -0.14 -1.22 16 23 C -0.14 -1.77 3.58 -90.68 -0.32 -2.10 16 24 H 0.10 1.18 8.15 -51.87 -0.42 0.76 16 25 C -0.09 -1.28 4.05 -26.62 -0.11 -1.39 16 26 C 0.37 5.87 4.67 -27.68 -0.13 5.74 16 27 O -0.45 -8.68 17.96 6.04 0.11 -8.57 16 28 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.03 0.73 6.94 -51.93 -0.36 0.37 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.32 6.77 -51.93 -0.35 0.97 16 34 H 0.05 1.01 7.53 -51.93 -0.39 0.62 16 35 H 0.09 1.74 6.46 -51.89 -0.34 1.40 16 36 H 0.08 1.16 6.30 -51.99 -0.33 0.83 16 37 H 0.11 2.10 5.61 -51.77 -0.29 1.81 16 38 H 0.06 0.66 8.16 -51.84 -0.42 0.24 16 39 H 0.08 0.81 8.16 -51.83 -0.42 0.39 16 40 H 0.08 0.87 5.03 -52.00 -0.26 0.61 16 41 H 0.07 0.56 8.18 -51.66 -0.42 0.14 16 42 H 0.07 0.66 8.16 -51.84 -0.42 0.24 16 43 H 0.06 0.61 8.16 -51.84 -0.42 0.18 16 44 H 0.07 1.04 8.17 -51.77 -0.42 0.62 16 45 H 0.09 1.21 6.13 -52.00 -0.32 0.89 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -28.16 334.54 -7.78 -35.94 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.93 Total: 4.94 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.21 Total: -4.58 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.14 Total: -35.20 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.20 Total: -20.91 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.16 -7.78 -35.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339161083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.435 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds