Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46737 * 2 1 4 4 C 1.50696 * 109.47182 * 120.00199 * 2 1 3 5 5 H 1.08002 * 119.99772 * 120.00358 * 4 2 1 6 6 C 1.37877 * 120.00205 * 299.99827 * 4 2 1 7 7 N 1.31515 * 119.99576 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46961 * 60.00319 * 8 6 4 10 10 H 1.48499 * 109.46868 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46907 * 300.00136 * 8 6 4 12 12 N 1.46500 * 109.46973 * 240.00370 * 2 1 3 13 13 C 1.46498 * 120.00281 * 294.17910 * 12 2 1 14 14 C 1.34779 * 120.00055 * 114.18028 * 12 2 1 15 15 O 1.21283 * 120.00132 * 183.74880 * 14 12 2 16 16 C 1.50858 * 119.99905 * 3.75277 * 14 12 2 17 17 C 1.52832 * 109.15251 * 69.32747 * 16 14 12 18 18 C 1.53383 * 109.70625 * 180.90569 * 17 16 14 19 19 H 1.09109 * 111.03008 * 119.07963 * 18 17 16 20 20 C 1.53392 * 108.90063 * 241.62203 * 18 17 16 21 21 C 1.52693 * 110.11928 * 59.53649 * 20 18 17 22 22 C 1.52693 * 111.09702 * 59.69556 * 21 20 18 23 23 C 1.53408 * 110.07500 * 300.26392 * 22 21 20 24 24 H 1.09106 * 111.02440 * 178.02092 * 23 22 21 25 25 C 1.52806 * 109.15220 * 190.60447 * 16 14 12 26 26 C 1.52062 * 107.33008 * 56.59724 * 23 22 21 27 27 O 1.20708 * 122.48645 * 121.35282 * 26 23 22 28 28 H 1.08995 * 109.47279 * 299.99677 * 1 2 3 29 29 H 1.09003 * 109.47545 * 59.99899 * 1 2 3 30 30 H 1.09005 * 109.46455 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99947 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47377 * 264.91324 * 13 12 2 33 33 H 1.08998 * 109.46851 * 24.91165 * 13 12 2 34 34 H 1.09003 * 109.47628 * 144.90840 * 13 12 2 35 35 H 1.09074 * 108.90557 * 309.96711 * 16 14 12 36 36 H 1.08895 * 109.74238 * 59.99116 * 17 16 14 37 37 H 1.09288 * 109.17573 * 300.59786 * 17 16 14 38 38 H 1.09160 * 109.42437 * 179.85156 * 20 18 17 39 39 H 1.09170 * 109.41977 * 299.22301 * 20 18 17 40 40 H 1.08873 * 109.79886 * 298.03176 * 21 20 18 41 41 H 1.09471 * 108.84058 * 179.52094 * 21 20 18 42 42 H 1.09167 * 109.43641 * 179.97438 * 22 21 20 43 43 H 1.09162 * 109.44060 * 60.55936 * 22 21 20 44 44 H 1.09288 * 109.17181 * 59.35403 * 25 16 14 45 45 H 1.08878 * 109.75896 * 299.96026 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1190 4.0075 10 1 1.8271 -0.4201 5.2203 11 1 1.8282 -2.5200 4.0079 12 7 2.0183 -0.6905 -1.1962 13 6 1.7726 -2.1248 -1.3658 14 6 2.6937 -0.0063 -2.1408 15 8 3.0387 -0.5622 -3.1621 16 6 3.0206 1.4509 -1.9278 17 6 4.0659 1.5734 -0.8196 18 6 4.3913 3.0526 -0.5767 19 1 4.1472 3.3444 0.4459 20 6 5.8765 3.2905 -0.8774 21 6 6.1841 2.9242 -2.3274 22 6 5.3521 3.7631 -3.2946 23 6 3.8570 3.5326 -3.0397 24 1 3.2474 4.1516 -3.6998 25 6 3.5431 2.0439 -3.2356 26 6 3.5896 3.8665 -1.5805 27 8 2.7992 4.7145 -1.2438 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 0.7088 1.1612 3.4843 32 1 2.6359 -2.6861 -1.0085 33 1 0.8903 -2.4123 -0.7939 34 1 1.6085 -2.3432 -2.4210 35 1 2.1129 1.9767 -1.6290 36 1 4.9691 1.0361 -1.1048 37 1 3.6675 1.1365 0.0996 38 1 6.1169 4.3420 -0.7097 39 1 6.4847 2.6760 -0.2108 40 1 5.9846 1.8664 -2.4909 41 1 7.2454 3.1096 -2.5214 42 1 5.5932 3.4801 -4.3210 43 1 5.5859 4.8199 -3.1526 44 1 2.7788 1.9358 -4.0092 45 1 4.4407 1.5127 -3.5479 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339161083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = -104.979326 kcal Electronic energy + Delta-G solvation = -25777.739427 eV Core-core repulsion = 22372.719742 eV Total energy + Delta-G solvation = -3405.019684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35599 -40.53308 -38.25408 -37.39121 -34.56112 -34.42863 -33.81912 -31.04657 -29.60441 -27.68031 -27.33751 -26.87179 -24.03556 -23.07526 -22.81307 -22.40014 -19.78991 -18.80276 -18.30175 -18.03737 -17.61970 -16.99871 -16.47494 -16.26643 -15.85932 -15.76261 -15.43850 -14.88758 -14.64670 -14.55388 -14.38107 -14.00640 -13.90770 -13.63162 -13.43304 -13.36833 -13.14899 -12.89674 -12.82821 -12.75434 -12.53328 -12.23105 -12.18030 -12.04293 -11.97157 -11.91947 -11.66994 -11.40444 -11.20607 -11.18257 -10.59859 -10.47027 -10.13245 -9.38592 -8.14074 -6.29040 0.94651 1.44232 1.45870 1.52381 1.68758 2.29093 2.46445 2.97119 3.15010 3.45903 3.51703 3.71493 3.91152 3.97121 4.03182 4.06109 4.13523 4.24889 4.42031 4.46955 4.55278 4.59166 4.67518 4.70811 4.75603 4.79551 4.88415 4.92929 4.96036 4.97125 5.03297 5.09276 5.17637 5.22610 5.25628 5.28236 5.35517 5.37822 5.53767 5.55358 5.73700 5.91339 6.18230 6.47451 6.66212 6.82500 7.27612 7.44470 8.89201 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.006213 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.411015 B = 4505.720076 C = 5217.267132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.597 5.597 13 C 0.098 3.902 14 C 0.511 3.489 15 O -0.587 6.587 16 C -0.107 4.107 17 C -0.098 4.098 18 C -0.133 4.133 19 H 0.082 0.918 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.101 4.101 23 C -0.129 4.129 24 H 0.106 0.894 25 C -0.080 4.080 26 C 0.371 3.629 27 O -0.497 6.497 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.734 3.800 -8.675 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.154 3.846 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.548 5.548 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.326 5.326 13 C -0.045 4.045 14 C 0.300 3.700 15 O -0.469 6.469 16 C -0.128 4.128 17 C -0.136 4.136 18 C -0.152 4.152 19 H 0.101 0.899 20 C -0.140 4.140 21 C -0.166 4.166 22 C -0.139 4.139 23 C -0.148 4.148 24 H 0.124 0.876 25 C -0.118 4.118 26 C 0.249 3.751 27 O -0.372 6.372 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.390 4.046 -8.855 13.526 hybrid contribution -0.525 -0.536 1.386 1.576 sum 8.865 3.510 -7.468 12.111 Atomic orbital electron populations 1.22030 0.98291 0.99883 1.00181 1.18968 0.91217 0.93137 0.81228 0.93576 1.21408 1.31988 1.13197 0.90745 0.92375 1.25515 0.94919 0.95434 1.01360 1.69966 1.36776 1.23544 1.24525 0.85699 0.78833 0.78753 0.78916 1.19695 1.21244 1.19825 1.48297 1.53319 1.09924 1.21102 1.21409 1.01247 0.80751 1.01071 1.20788 0.77410 0.89401 0.82399 1.90565 1.55992 1.71769 1.28608 1.21328 0.99902 0.92656 0.98960 1.21673 0.98799 0.95069 0.98036 1.22260 0.98808 0.95142 0.99032 0.89923 1.21625 0.91131 1.02879 0.98370 1.21610 1.01226 1.00752 0.92981 1.21631 0.89612 1.01158 1.01461 1.22353 1.01165 0.97545 0.93745 0.87615 1.21457 1.03174 0.92711 0.94463 1.25685 0.77240 0.78099 0.94115 1.90357 1.31428 1.30683 1.84752 0.90802 0.96146 0.94363 0.92595 0.93321 0.90890 0.91806 0.91280 0.89035 0.90998 0.90668 0.89583 0.91273 0.88708 0.88350 0.90579 0.91230 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.69 9.04 71.98 0.65 -6.04 16 2 C 0.26 11.85 1.69 44.24 0.07 11.93 16 3 H 0.05 2.28 4.38 -2.38 -0.01 2.27 16 4 C -0.53 -26.50 7.92 25.60 0.20 -26.30 16 5 H 0.06 2.88 7.44 -2.91 -0.02 2.86 16 6 C 0.03 1.44 5.30 84.65 0.45 1.89 16 7 N -0.91 -48.38 11.32 21.45 0.24 -48.13 16 8 Si 0.95 40.60 29.54 68.60 2.03 42.63 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 N -0.60 -24.99 2.75 -826.58 -2.28 -27.26 16 13 C 0.10 3.68 9.35 127.77 1.19 4.88 16 14 C 0.51 20.41 6.93 87.71 0.61 21.02 16 15 O -0.59 -24.72 15.60 -3.04 -0.05 -24.77 16 16 C -0.11 -3.72 1.34 -11.61 -0.02 -3.74 16 17 C -0.10 -3.23 4.32 30.67 0.13 -3.10 16 18 C -0.13 -3.91 3.58 -10.84 -0.04 -3.95 16 19 H 0.08 2.74 8.15 -2.33 -0.02 2.72 16 20 C -0.10 -2.11 5.23 30.62 0.16 -1.95 16 21 C -0.13 -2.18 5.29 30.39 0.16 -2.01 16 22 C -0.10 -1.70 5.24 30.63 0.16 -1.54 16 23 C -0.13 -3.09 3.58 -10.83 -0.04 -3.13 16 24 H 0.11 2.37 8.15 -2.33 -0.02 2.36 16 25 C -0.08 -2.21 4.05 30.67 0.12 -2.08 16 26 C 0.37 11.59 4.67 29.98 0.14 11.73 16 27 O -0.50 -19.44 17.96 -1.30 -0.02 -19.46 16 28 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 1.67 6.94 -2.38 -0.02 1.65 16 31 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.68 6.77 -2.39 -0.02 2.66 16 34 H 0.06 2.27 7.53 -2.39 -0.02 2.25 16 35 H 0.07 2.71 6.46 -2.35 -0.02 2.70 16 36 H 0.09 2.69 6.30 -2.44 -0.02 2.67 16 37 H 0.07 2.91 5.61 -2.23 -0.01 2.89 16 38 H 0.07 1.39 8.16 -2.30 -0.02 1.37 16 39 H 0.09 1.62 8.16 -2.30 -0.02 1.60 16 40 H 0.07 1.32 5.03 -2.45 -0.01 1.30 16 41 H 0.09 1.14 8.18 -2.14 -0.02 1.13 16 42 H 0.10 1.27 8.16 -2.30 -0.02 1.25 16 43 H 0.08 1.15 8.16 -2.30 -0.02 1.13 16 44 H 0.07 1.94 8.17 -2.23 -0.02 1.92 16 45 H 0.10 2.48 6.13 -2.45 -0.02 2.47 16 Total: -1.00 -60.78 334.54 4.88 -55.90 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.99 Total: 23.51 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 3.96 Total: -2.40 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.03 Total: -75.40 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.07 Total: -44.23 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -60.78 4.88 -55.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339161083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.082 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds