Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47113 * 2 1 4 4 C 1.50697 * 109.47151 * 240.00304 * 2 1 3 5 5 H 1.08006 * 120.00282 * 240.00149 * 4 2 1 6 6 C 1.37878 * 120.00156 * 59.99483 * 4 2 1 7 7 N 1.31513 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00440 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46782 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47154 * 120.00210 * 8 6 4 11 11 H 1.48503 * 109.47293 * 240.00756 * 8 6 4 12 12 N 1.46501 * 109.47313 * 120.00180 * 2 1 3 13 13 C 1.46495 * 119.99841 * 60.00131 * 12 2 1 14 14 C 1.34774 * 120.00110 * 239.99535 * 12 2 1 15 15 O 1.21279 * 119.99893 * 4.83470 * 14 12 2 16 16 C 1.50586 * 119.99835 * 184.82783 * 14 12 2 17 17 C 1.51144 * 111.48985 * 157.33015 * 16 14 12 18 18 C 1.52662 * 114.26878 * 98.38388 * 17 16 14 19 19 H 1.10922 * 108.97985 * 169.31880 * 18 17 16 20 20 C 1.51612 * 112.42646 * 291.03101 * 18 17 16 21 21 C 1.50963 * 116.88105 * 80.85638 * 20 18 17 22 22 C 1.51300 * 117.36473 * 31.46966 * 21 20 18 23 23 C 1.52841 * 113.23967 * 320.16516 * 22 21 20 24 24 H 1.10753 * 109.13087 * 172.01493 * 23 22 21 25 25 C 1.50761 * 112.04334 * 292.60045 * 16 14 12 26 26 C 1.51485 * 106.78602 * 54.26657 * 23 22 21 27 27 O 1.20479 * 123.38408 * 115.03329 * 26 23 22 28 28 H 1.08996 * 109.47435 * 59.99667 * 1 2 3 29 29 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46753 * 299.99594 * 1 2 3 31 31 H 0.97002 * 120.00723 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47300 * 264.70833 * 13 12 2 33 33 H 1.09000 * 109.47411 * 24.71268 * 13 12 2 34 34 H 1.09003 * 109.47511 * 144.70896 * 13 12 2 35 35 H 1.12993 * 103.80766 * 45.20547 * 16 14 12 36 36 H 1.10024 * 109.30041 * 336.27777 * 17 16 14 37 37 H 1.10104 * 109.15548 * 220.18944 * 17 16 14 38 38 H 1.10631 * 108.58465 * 203.99429 * 20 18 17 39 39 H 1.10617 * 108.63156 * 317.63276 * 20 18 17 40 40 H 1.11692 * 106.84123 * 151.03205 * 21 20 18 41 41 H 1.09228 * 111.11864 * 263.27925 * 21 20 18 42 42 H 1.09879 * 109.41637 * 198.55488 * 22 21 20 43 43 H 1.09893 * 109.37242 * 81.68021 * 22 21 20 44 44 H 1.10756 * 108.45216 * 15.70424 * 25 16 14 45 45 H 1.10780 * 108.42701 * 128.81102 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0142 1.1479 1.9377 16 6 3.3846 -0.7736 3.2552 17 6 4.6080 -0.0679 3.7936 18 6 4.3409 0.8060 5.0165 19 1 5.3106 1.1228 5.4522 20 6 3.5095 2.0292 4.6829 21 6 2.0167 1.8314 4.5764 22 6 1.3917 0.7684 5.4529 23 6 2.2398 -0.4984 5.5624 24 1 1.7965 -1.1673 6.3257 25 6 2.3282 -1.2224 4.2327 26 6 3.6160 -0.0649 6.0240 27 8 4.0884 -0.3795 7.0867 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7093 1.1619 -3.4843 32 1 0.7909 -2.1449 2.0777 33 1 1.4380 -2.5729 0.4757 34 1 2.5013 -2.6055 1.9027 35 1 3.7825 -1.7281 2.8000 36 1 5.0456 0.5572 3.0010 37 1 5.3705 -0.8172 4.0572 38 1 3.7079 2.8083 5.4428 39 1 3.8771 2.4576 3.7316 40 1 1.5407 2.8009 4.8610 41 1 1.7113 1.6927 3.5369 42 1 0.4035 0.5005 5.0540 43 1 1.2311 1.1752 6.4611 44 1 1.3407 -1.1595 3.7350 45 1 2.4729 -2.3023 4.4332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339161084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -88.089763 kcal Electronic energy + Delta-G solvation = -25614.140034 eV Core-core repulsion = 22209.852736 eV Total energy + Delta-G solvation = -3404.287298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93543 -39.00583 -36.87083 -35.33100 -33.68357 -33.07629 -32.45380 -29.66065 -28.19616 -26.53659 -26.07812 -25.25118 -22.91931 -22.05025 -21.73853 -20.43246 -18.35864 -17.41752 -16.63965 -16.37716 -15.78944 -15.58479 -15.28045 -14.83462 -14.71116 -14.41228 -14.10263 -13.63148 -13.32201 -13.14181 -13.11501 -12.90081 -12.54997 -12.32103 -12.08183 -11.72719 -11.66139 -11.38466 -11.20804 -11.10360 -11.01294 -10.96723 -10.92994 -10.78474 -10.54275 -10.27276 -10.25827 -10.20761 -9.72633 -9.19940 -9.06824 -8.76501 -8.45247 -7.59772 -6.11365 -4.19454 1.97883 3.22618 3.30552 3.32543 3.36766 3.83273 4.11558 4.35683 4.45910 4.54360 4.65639 4.84282 4.91498 4.97286 5.07787 5.20113 5.21621 5.32946 5.43135 5.50444 5.62008 5.68151 5.77671 5.81941 5.82767 5.84879 5.95280 5.98672 6.04110 6.12160 6.26699 6.29960 6.36458 6.51694 6.66807 6.72604 6.81007 7.03861 7.40614 7.50039 7.50992 7.68656 7.98735 8.16584 8.51542 8.80072 9.05133 9.47647 10.93749 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.004451 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.300409 B = 6289.113464 C = 6361.487451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.081 3.919 14 C 0.511 3.489 15 O -0.543 6.543 16 C -0.106 4.106 17 C -0.088 4.088 18 C -0.122 4.122 19 H 0.091 0.909 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.128 4.128 24 H 0.094 0.906 25 C -0.092 4.092 26 C 0.379 3.621 27 O -0.459 6.459 28 H 0.092 0.908 29 H 0.028 0.972 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -3.455 13.520 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.298 3.702 15 O -0.422 6.422 16 C -0.128 4.128 17 C -0.126 4.126 18 C -0.141 4.141 19 H 0.109 0.891 20 C -0.131 4.131 21 C -0.160 4.160 22 C -0.139 4.139 23 C -0.147 4.147 24 H 0.112 0.888 25 C -0.130 4.130 26 C 0.255 3.745 27 O -0.332 6.332 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.799 -2.886 13.811 14.224 hybrid contribution 0.154 -0.636 -1.060 1.246 sum 1.953 -3.522 12.751 13.372 Atomic orbital electron populations 1.22074 0.98298 0.99298 1.00726 1.18919 0.90824 0.94475 0.79852 0.91867 1.21364 1.31783 1.13016 0.90342 0.92268 1.24886 0.94924 0.94961 0.98957 1.69885 1.36355 1.22578 1.23664 0.86465 0.78612 0.79604 0.82849 1.19839 1.20950 1.20918 1.48198 1.49044 1.11546 1.23581 1.21692 0.98682 0.83582 1.02360 1.20182 0.79220 0.87463 0.83320 1.90588 1.60561 1.15289 1.75761 1.20819 0.96123 1.00489 0.95338 1.21113 0.95715 0.98635 0.97118 1.21738 0.99883 0.96282 0.96212 0.89118 1.20905 0.94127 0.94742 1.03304 1.21028 0.94780 0.97863 1.02356 1.21332 0.98555 0.93713 1.00261 1.21789 0.95844 0.98543 0.98542 0.88821 1.21010 0.99987 0.99116 0.92910 1.24779 0.88070 0.76569 0.85128 1.90287 1.69486 1.50112 1.23357 0.88959 0.95279 0.97054 0.92737 0.93871 0.90042 0.92892 0.89964 0.89312 0.91792 0.93356 0.89422 0.93180 0.89628 0.91017 0.92392 0.90192 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 2 C 0.26 6.25 2.63 -69.08 -0.18 6.07 16 3 H 0.06 1.78 6.91 -51.93 -0.36 1.42 16 4 C -0.53 -13.63 7.95 -34.44 -0.27 -13.90 16 5 H 0.06 1.52 7.42 -52.48 -0.39 1.13 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -11.56 2.75 -175.32 -0.48 -12.04 16 13 C 0.08 1.25 8.08 59.84 0.48 1.73 16 14 C 0.51 9.35 5.70 -11.04 -0.06 9.29 16 15 O -0.54 -11.53 11.45 5.56 0.06 -11.47 16 16 C -0.11 -1.46 1.41 -93.88 -0.13 -1.59 16 17 C -0.09 -1.15 4.54 -27.84 -0.13 -1.27 16 18 C -0.12 -1.55 3.02 -92.19 -0.28 -1.82 16 19 H 0.09 1.06 8.30 -50.82 -0.42 0.64 16 20 C -0.09 -1.23 4.55 -28.46 -0.13 -1.36 16 21 C -0.12 -1.66 4.67 -28.61 -0.13 -1.79 16 22 C -0.10 -1.17 5.19 -27.67 -0.14 -1.32 16 23 C -0.13 -1.48 3.08 -92.14 -0.28 -1.76 16 24 H 0.09 0.97 8.29 -50.92 -0.42 0.55 16 25 C -0.09 -1.08 3.94 -28.53 -0.11 -1.19 16 26 C 0.38 5.01 5.85 -28.19 -0.17 4.85 16 27 O -0.46 -7.20 17.97 6.23 0.11 -7.09 16 28 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.58 7.17 -51.93 -0.37 0.21 16 33 H 0.08 1.37 7.10 -51.93 -0.37 1.00 16 34 H 0.05 0.67 5.94 -51.93 -0.31 0.36 16 35 H 0.08 1.04 6.56 -49.58 -0.33 0.71 16 36 H 0.09 1.29 7.28 -51.35 -0.37 0.91 16 37 H 0.06 0.72 8.23 -51.30 -0.42 0.30 16 38 H 0.05 0.57 8.28 -50.99 -0.42 0.15 16 39 H 0.09 1.32 7.06 -51.00 -0.36 0.96 16 40 H 0.05 0.62 8.33 -50.37 -0.42 0.21 16 41 H 0.09 1.42 5.46 -51.80 -0.28 1.13 16 42 H 0.07 0.79 8.12 -51.43 -0.42 0.37 16 43 H 0.06 0.61 8.22 -51.42 -0.42 0.19 16 44 H 0.08 0.97 5.89 -50.92 -0.30 0.67 16 45 H 0.07 0.65 8.28 -50.91 -0.42 0.23 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -29.43 332.26 -8.07 -37.51 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.08 Total: 1.84 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.30 Total: -5.44 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.15 Total: -35.83 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.18 Total: -18.56 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.43 -8.07 -37.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339161084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.583 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds