Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47113 * 2 1 4 4 C 1.50697 * 109.47151 * 240.00304 * 2 1 3 5 5 H 1.08006 * 120.00282 * 240.00149 * 4 2 1 6 6 C 1.37878 * 120.00156 * 59.99483 * 4 2 1 7 7 N 1.31513 * 119.99981 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00440 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46782 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47154 * 120.00210 * 8 6 4 11 11 H 1.48503 * 109.47293 * 240.00756 * 8 6 4 12 12 N 1.46501 * 109.47313 * 120.00180 * 2 1 3 13 13 C 1.46495 * 119.99841 * 60.00131 * 12 2 1 14 14 C 1.34774 * 120.00110 * 239.99535 * 12 2 1 15 15 O 1.21279 * 119.99893 * 4.83470 * 14 12 2 16 16 C 1.50586 * 119.99835 * 184.82783 * 14 12 2 17 17 C 1.51144 * 111.48985 * 157.33015 * 16 14 12 18 18 C 1.52662 * 114.26878 * 98.38388 * 17 16 14 19 19 H 1.10922 * 108.97985 * 169.31880 * 18 17 16 20 20 C 1.51612 * 112.42646 * 291.03101 * 18 17 16 21 21 C 1.50963 * 116.88105 * 80.85638 * 20 18 17 22 22 C 1.51300 * 117.36473 * 31.46966 * 21 20 18 23 23 C 1.52841 * 113.23967 * 320.16516 * 22 21 20 24 24 H 1.10753 * 109.13087 * 172.01493 * 23 22 21 25 25 C 1.50761 * 112.04334 * 292.60045 * 16 14 12 26 26 C 1.51485 * 106.78602 * 54.26657 * 23 22 21 27 27 O 1.20479 * 123.38408 * 115.03329 * 26 23 22 28 28 H 1.08996 * 109.47435 * 59.99667 * 1 2 3 29 29 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46753 * 299.99594 * 1 2 3 31 31 H 0.97002 * 120.00723 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47300 * 264.70833 * 13 12 2 33 33 H 1.09000 * 109.47411 * 24.71268 * 13 12 2 34 34 H 1.09003 * 109.47511 * 144.70896 * 13 12 2 35 35 H 1.12993 * 103.80766 * 45.20547 * 16 14 12 36 36 H 1.10024 * 109.30041 * 336.27777 * 17 16 14 37 37 H 1.10104 * 109.15548 * 220.18944 * 17 16 14 38 38 H 1.10631 * 108.58465 * 203.99429 * 20 18 17 39 39 H 1.10617 * 108.63156 * 317.63276 * 20 18 17 40 40 H 1.11692 * 106.84123 * 151.03205 * 21 20 18 41 41 H 1.09228 * 111.11864 * 263.27925 * 21 20 18 42 42 H 1.09879 * 109.41637 * 198.55488 * 22 21 20 43 43 H 1.09893 * 109.37242 * 81.68021 * 22 21 20 44 44 H 1.10756 * 108.45216 * 15.70424 * 25 16 14 45 45 H 1.10780 * 108.42701 * 128.81102 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0142 1.1479 1.9377 16 6 3.3846 -0.7736 3.2552 17 6 4.6080 -0.0679 3.7936 18 6 4.3409 0.8060 5.0165 19 1 5.3106 1.1228 5.4522 20 6 3.5095 2.0292 4.6829 21 6 2.0167 1.8314 4.5764 22 6 1.3917 0.7684 5.4529 23 6 2.2398 -0.4984 5.5624 24 1 1.7965 -1.1673 6.3257 25 6 2.3282 -1.2224 4.2327 26 6 3.6160 -0.0649 6.0240 27 8 4.0884 -0.3795 7.0867 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7093 1.1619 -3.4843 32 1 0.7909 -2.1449 2.0777 33 1 1.4380 -2.5729 0.4757 34 1 2.5013 -2.6055 1.9027 35 1 3.7825 -1.7281 2.8000 36 1 5.0456 0.5572 3.0010 37 1 5.3705 -0.8172 4.0572 38 1 3.7079 2.8083 5.4428 39 1 3.8771 2.4576 3.7316 40 1 1.5407 2.8009 4.8610 41 1 1.7113 1.6927 3.5369 42 1 0.4035 0.5005 5.0540 43 1 1.2311 1.1752 6.4611 44 1 1.3407 -1.1595 3.7350 45 1 2.4729 -2.3023 4.4332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339161084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -104.425534 kcal Electronic energy + Delta-G solvation = -25614.848406 eV Core-core repulsion = 22209.852736 eV Total energy + Delta-G solvation = -3404.995670 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04487 -40.35006 -38.04840 -36.93029 -35.11120 -34.25861 -33.81717 -31.33494 -29.39859 -27.66270 -27.29086 -27.24912 -24.27667 -23.04231 -22.84310 -21.91974 -19.76129 -18.63107 -18.32354 -17.74809 -17.25871 -16.78557 -16.48889 -16.22680 -15.88919 -15.66832 -15.49350 -14.73220 -14.57220 -14.49778 -14.23793 -14.12194 -13.97309 -13.56405 -13.53027 -13.20870 -12.98819 -12.87006 -12.75554 -12.67561 -12.46931 -12.18895 -12.17583 -12.09213 -11.99537 -11.88794 -11.74072 -11.31280 -11.11063 -10.80236 -10.53692 -10.16508 -10.04980 -9.18084 -8.12006 -6.27882 0.95123 1.41293 1.43653 1.53955 1.97230 2.34320 2.53521 3.11192 3.16246 3.45920 3.54625 3.63396 3.84579 3.87526 4.00048 4.02563 4.19110 4.30802 4.45113 4.46639 4.58850 4.65226 4.73349 4.79602 4.83056 4.85754 4.87330 4.89986 4.95079 4.97496 5.04958 5.10834 5.12985 5.14299 5.27087 5.28468 5.46398 5.53096 5.57227 5.69050 5.74190 6.11235 6.21924 6.49086 6.81873 6.97801 7.38658 7.62936 8.91903 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.004451 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.300409 B = 6289.113464 C = 6361.487451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.010 0.990 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.287 1.287 12 N -0.602 5.602 13 C 0.077 3.923 14 C 0.503 3.497 15 O -0.582 6.582 16 C -0.097 4.097 17 C -0.089 4.089 18 C -0.123 4.123 19 H 0.099 0.901 20 C -0.091 4.091 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.123 4.123 24 H 0.118 0.882 25 C -0.095 4.095 26 C 0.387 3.613 27 O -0.482 6.482 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -6.078 15.128 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.164 3.836 3 H 0.028 0.972 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.214 1.214 12 N -0.333 5.333 13 C -0.065 4.065 14 C 0.293 3.707 15 O -0.463 6.463 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.142 4.142 19 H 0.118 0.882 20 C -0.128 4.128 21 C -0.158 4.158 22 C -0.138 4.138 23 C -0.142 4.142 24 H 0.136 0.864 25 C -0.133 4.133 26 C 0.264 3.736 27 O -0.357 6.357 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.960 -5.540 15.438 16.518 hybrid contribution 0.123 0.270 -1.551 1.579 sum 2.083 -5.270 13.886 14.998 Atomic orbital electron populations 1.21848 0.97544 0.99827 0.99679 1.18437 0.91315 0.92201 0.81687 0.97188 1.21645 1.31510 1.12913 0.91215 0.92101 1.25692 0.95174 0.95629 1.01923 1.70030 1.37515 1.23957 1.24188 0.85473 0.78151 0.78553 0.79218 1.18828 1.20268 1.21369 1.48147 1.49511 1.13192 1.22454 1.21928 1.01159 0.81048 1.02405 1.21076 0.78320 0.87247 0.84101 1.90581 1.61593 1.17392 1.76754 1.20821 0.96536 1.00272 0.94154 1.21129 0.96028 0.99000 0.96478 1.21747 1.00258 0.95979 0.96254 0.88248 1.20857 0.94148 0.95578 1.02239 1.20978 0.94991 0.99087 1.00700 1.21330 0.98699 0.93324 1.00483 1.21825 0.94629 0.98719 0.99045 0.86431 1.21068 0.98940 1.01080 0.92198 1.24875 0.88514 0.75803 0.84407 1.90291 1.70172 1.51021 1.24205 0.91862 0.93734 0.96187 0.92817 0.91363 0.91638 0.89489 0.87912 0.91629 0.89230 0.92016 0.92214 0.92894 0.93154 0.90234 0.90943 0.90365 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.97 71.98 0.65 -5.43 16 2 C 0.27 13.19 2.63 44.24 0.12 13.31 16 3 H 0.01 0.61 6.91 -2.39 -0.02 0.59 16 4 C -0.53 -28.01 7.95 25.60 0.20 -27.81 16 5 H 0.06 3.10 7.42 -2.91 -0.02 3.08 16 6 C 0.02 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.96 42.22 29.54 68.60 2.03 44.25 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 N -0.60 -23.26 2.75 -826.97 -2.27 -25.53 16 13 C 0.08 2.17 8.08 127.77 1.03 3.21 16 14 C 0.50 18.38 5.70 87.62 0.50 18.88 16 15 O -0.58 -25.97 11.45 -3.03 -0.03 -26.01 16 16 C -0.10 -2.42 1.41 -12.91 -0.02 -2.44 16 17 C -0.09 -2.17 4.54 29.88 0.14 -2.03 16 18 C -0.12 -2.95 3.02 -11.81 -0.04 -2.99 16 19 H 0.10 2.19 8.30 -1.35 -0.01 2.18 16 20 C -0.09 -2.40 4.55 29.48 0.13 -2.27 16 21 C -0.12 -3.22 4.67 29.38 0.14 -3.08 16 22 C -0.10 -2.11 5.19 29.99 0.16 -1.95 16 23 C -0.12 -2.41 3.08 -11.78 -0.04 -2.45 16 24 H 0.12 1.85 8.29 -1.44 -0.01 1.84 16 25 C -0.10 -1.85 3.94 29.43 0.12 -1.73 16 26 C 0.39 9.13 5.85 29.65 0.17 9.30 16 27 O -0.48 -13.74 17.97 -0.62 -0.01 -13.76 16 28 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 29 H 0.04 1.88 7.67 -2.39 -0.02 1.86 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.07 1.59 7.17 -2.39 -0.02 1.57 16 33 H 0.06 2.07 7.10 -2.39 -0.02 2.06 16 34 H 0.09 1.84 5.94 -2.39 -0.01 1.83 16 35 H 0.10 2.18 6.56 -0.18 0.00 2.18 16 36 H 0.07 1.93 7.28 -1.84 -0.01 1.91 16 37 H 0.09 1.75 8.23 -1.80 -0.01 1.74 16 38 H 0.06 1.43 8.28 -1.51 -0.01 1.42 16 39 H 0.06 1.91 7.06 -1.52 -0.01 1.90 16 40 H 0.05 1.33 8.33 -0.92 -0.01 1.32 16 41 H 0.05 1.72 5.46 -2.27 -0.01 1.71 16 42 H 0.08 1.56 8.12 -1.92 -0.02 1.54 16 43 H 0.07 1.33 8.22 -1.91 -0.02 1.31 16 44 H 0.08 1.61 5.89 -1.44 -0.01 1.60 16 45 H 0.10 1.38 8.28 -1.43 -0.01 1.36 16 Total: -1.00 -66.84 332.26 4.73 -62.11 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.06 Total: 16.99 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.71 Total: -6.23 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.03 Total: -77.36 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.05 Total: -39.76 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -66.84 4.73 -62.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339161084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.312 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds