Wall clock time and date at job start Tue Mar 31 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47619 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47014 * 299.99440 * 3 2 1 6 6 H 1.48500 * 109.47176 * 59.99107 * 3 2 1 7 7 C 1.37880 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00230 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47451 * 184.49776 * 9 7 2 11 11 C 1.46897 * 110.99762 * 64.60220 * 10 9 7 12 12 C 1.53244 * 109.33945 * 172.74916 * 11 10 9 13 13 N 1.47077 * 108.68032 * 53.73364 * 12 11 10 14 14 C 1.34774 * 120.87968 * 128.91756 * 13 12 11 15 15 O 1.21284 * 120.00167 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00070 * 180.02562 * 14 13 12 17 17 H 1.09008 * 110.54086 * 319.92247 * 16 14 13 18 18 C 1.54834 * 110.61267 * 196.88741 * 16 14 13 19 19 C 1.55844 * 103.52005 * 241.48951 * 18 16 14 20 20 H 1.09001 * 115.58365 * 201.11210 * 19 18 16 21 21 C 1.55845 * 105.03062 * 71.72685 * 19 18 16 22 22 C 1.54829 * 103.52404 * 288.27269 * 21 19 18 23 23 C 1.55840 * 110.61277 * 82.78623 * 16 14 13 24 24 H 1.09000 * 115.58653 * 277.39585 * 23 16 14 25 25 N 1.50653 * 101.02952 * 151.50239 * 23 16 14 26 26 C 1.47143 * 118.19242 * 309.15211 * 13 12 11 27 27 C 1.46897 * 110.99848 * 300.30422 * 10 9 7 28 28 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47264 * 64.49559 * 9 7 2 30 30 H 1.09006 * 109.46789 * 304.49748 * 9 7 2 31 31 H 1.08998 * 109.49331 * 52.79293 * 11 10 9 32 32 H 1.08998 * 109.50057 * 292.70924 * 11 10 9 33 33 H 1.08997 * 109.63022 * 173.54305 * 12 11 10 34 34 H 1.09004 * 109.62520 * 293.92663 * 12 11 10 35 35 H 1.08998 * 110.61493 * 0.02562 * 18 16 14 36 36 H 1.09009 * 110.61377 * 122.97949 * 18 16 14 37 37 H 1.09006 * 110.61323 * 46.78521 * 21 19 18 38 38 H 1.08997 * 110.61122 * 169.76342 * 21 19 18 39 39 H 1.09002 * 110.61380 * 241.49693 * 22 21 19 40 40 H 1.08998 * 110.61845 * 118.50817 * 22 21 19 41 41 H 1.00908 * 110.99648 * 62.34749 * 25 23 16 42 42 H 1.08998 * 109.46855 * 291.14086 * 26 13 12 43 43 H 1.09008 * 109.80433 * 170.74971 * 26 13 12 44 44 H 1.08997 * 109.49463 * 307.21141 * 27 10 9 45 45 H 1.09004 * 109.49389 * 67.28915 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2019 -3.6136 0.1098 11 6 2.9046 -3.5816 1.3994 12 6 3.7479 -4.8522 1.5495 13 7 4.6178 -4.9823 0.3707 14 6 5.9433 -5.1837 0.5080 15 8 6.4338 -5.2594 1.6146 16 6 6.8162 -5.3135 -0.7136 17 1 6.3134 -5.9004 -1.4824 18 6 8.1799 -5.9470 -0.3442 19 6 9.2098 -4.8392 -0.7194 20 1 10.2318 -5.1819 -0.8811 21 6 9.0199 -3.7292 0.3579 22 6 7.6563 -3.0957 -0.0114 23 6 7.2043 -3.9076 -1.2626 24 1 6.4617 -3.4307 -1.9023 25 7 8.5327 -4.2066 -1.9073 26 6 4.0022 -4.8813 -0.9620 27 6 3.1489 -3.6096 -1.0132 28 1 -0.4850 0.8400 -0.0004 29 1 0.6866 -2.5928 -0.9272 30 1 0.5650 -2.5226 0.8473 31 1 2.1766 -3.5304 2.2090 32 1 3.5542 -2.7072 1.4381 33 1 4.3589 -4.7820 2.4494 34 1 3.0926 -5.7205 1.6187 35 1 8.2244 -6.1674 0.7223 36 1 8.3556 -6.8489 -0.9308 37 1 8.9826 -4.1656 1.3561 38 1 9.8174 -2.9892 0.2911 39 1 7.7779 -2.0417 -0.2614 40 1 6.9429 -3.2181 0.8036 41 1 8.4281 -4.8706 -2.6599 42 1 3.3715 -5.7528 -1.1378 43 1 4.7792 -4.8319 -1.7249 44 1 2.5981 -3.5788 -1.9533 45 1 3.7951 -2.7348 -0.9410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341530746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:27 Heat of formation + Delta-G solvation = -3.486208 kcal Electronic energy + Delta-G solvation = -25267.059403 eV Core-core repulsion = 21898.733542 eV Total energy + Delta-G solvation = -3368.325861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30389 -39.04456 -37.33310 -34.48549 -32.40103 -31.33684 -30.54549 -29.80064 -29.54173 -28.04093 -25.42740 -23.58221 -22.86251 -22.07144 -21.03017 -20.65340 -19.49650 -18.22605 -17.46273 -16.84245 -16.42574 -16.05695 -15.64244 -14.84804 -14.60202 -14.45754 -14.02847 -13.77164 -13.54556 -13.05772 -12.87398 -12.62257 -12.41680 -12.29249 -12.08720 -11.88719 -11.83005 -11.61351 -11.19755 -11.09891 -11.05099 -11.01582 -10.85268 -10.71040 -10.63451 -10.29454 -10.14991 -9.97008 -9.76259 -9.64350 -8.92075 -8.50368 -8.44785 -7.31045 -6.10087 -4.19585 2.70271 3.11569 3.22293 3.31184 3.34535 3.89232 4.35217 4.36927 4.43293 4.63756 4.76302 4.83582 4.95163 5.06585 5.12027 5.20371 5.22043 5.30269 5.42688 5.44575 5.53054 5.57622 5.62002 5.70255 5.79348 5.85072 5.95408 6.02358 6.03998 6.08931 6.12466 6.16017 6.36228 6.44072 6.54247 6.67197 6.72866 7.06882 7.15406 7.43674 7.56975 7.81692 7.91632 8.13077 8.20002 8.30349 8.90280 9.48241 10.95160 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.004812 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.674947 B = 5817.851755 C = 6590.022512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.187 3.813 10 N -0.540 5.540 11 C 0.051 3.949 12 C 0.115 3.885 13 N -0.604 5.604 14 C 0.528 3.472 15 O -0.548 6.548 16 C -0.147 4.147 17 H 0.093 0.907 18 C -0.143 4.143 19 C 0.049 3.951 20 H 0.114 0.886 21 C -0.110 4.110 22 C -0.121 4.121 23 C 0.065 3.935 24 H 0.120 0.880 25 N -0.646 5.646 26 C 0.108 3.892 27 C 0.049 3.951 28 H 0.262 0.738 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.330 0.670 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.013 -11.685 -3.102 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.078 4.078 12 C -0.008 4.008 13 N -0.336 5.336 14 C 0.316 3.684 15 O -0.426 6.426 16 C -0.170 4.170 17 H 0.112 0.888 18 C -0.182 4.182 19 C -0.061 4.061 20 H 0.132 0.868 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.045 4.045 24 H 0.138 0.862 25 N -0.272 5.272 26 C -0.015 4.015 27 C -0.080 4.080 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.181 -11.313 -2.590 18.325 hybrid contribution 0.140 0.885 -0.013 0.896 sum 14.321 -10.428 -2.603 17.906 Atomic orbital electron populations 1.69944 1.06013 1.26833 1.49996 1.24947 0.94743 0.99162 0.94773 0.86612 0.80172 0.83957 0.77747 1.19834 1.20869 1.20895 1.21753 0.93281 0.92040 1.51924 0.92532 1.19775 0.90686 0.85343 0.98023 1.62491 1.16513 1.47004 1.00392 1.22231 0.96674 0.95172 0.93758 1.21828 0.92154 0.98831 0.87975 1.48179 1.06641 1.70597 1.08189 1.20153 0.81907 0.75759 0.90555 1.90637 1.73171 1.51651 1.27162 1.23162 0.96702 1.00110 0.97002 0.88840 1.23329 0.92600 0.98035 1.04255 1.24305 0.97520 0.93314 0.90963 0.86819 1.22536 0.97140 0.97120 0.97965 1.22690 0.97406 0.99439 0.96393 1.24267 0.91746 0.92962 0.95543 0.86220 1.66013 1.12866 1.41145 1.07128 1.22027 0.96531 0.99828 0.83140 1.22234 0.94762 0.94853 0.96188 0.92786 0.95190 0.94671 0.90379 0.93936 0.89579 0.91450 0.88771 0.91449 0.90775 0.91581 0.91127 0.90541 0.85593 0.91124 0.90432 0.90310 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.55 -14.56 7.76 -34.44 -0.27 -14.82 16 8 H 0.06 1.50 5.87 -52.49 -0.31 1.19 16 9 C 0.19 4.57 5.11 -4.98 -0.03 4.55 16 10 N -0.54 -10.74 4.83 -235.77 -1.14 -11.88 16 11 C 0.05 0.95 5.24 -3.70 -0.02 0.93 16 12 C 0.11 1.82 6.59 -3.60 -0.02 1.80 16 13 N -0.60 -9.00 3.02 -172.41 -0.52 -9.52 16 14 C 0.53 7.78 5.29 -10.98 -0.06 7.73 16 15 O -0.55 -9.52 13.97 5.55 0.08 -9.45 16 16 C -0.15 -1.68 2.15 -89.29 -0.19 -1.87 16 17 H 0.09 0.91 6.94 -51.92 -0.36 0.55 16 18 C -0.14 -1.50 5.87 -24.25 -0.14 -1.64 16 19 C 0.05 0.49 5.59 -62.56 -0.35 0.14 16 20 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 21 C -0.11 -1.30 6.43 -24.25 -0.16 -1.46 16 22 C -0.12 -1.65 6.13 -24.24 -0.15 -1.80 16 23 C 0.07 0.76 4.99 -62.56 -0.31 0.45 16 24 H 0.12 1.38 7.65 -51.93 -0.40 0.98 16 25 N -0.65 -6.75 7.71 -88.23 -0.68 -7.43 16 26 C 0.11 1.45 6.36 -3.57 -0.02 1.43 16 27 C 0.05 0.85 5.16 -3.70 -0.02 0.83 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 32 H 0.04 0.90 7.09 -51.93 -0.37 0.53 16 33 H 0.09 1.40 7.06 -51.93 -0.37 1.03 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.18 6.36 -51.93 -0.33 0.85 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.22 5.64 -51.93 -0.29 0.93 16 41 H 0.33 2.84 8.66 -39.29 -0.34 2.50 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.85 5.13 -51.92 -0.27 0.58 16 44 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 45 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -29.66 336.23 -10.45 -40.11 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.13 Total: 3.79 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.83 Total: -2.00 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.60 Total: -53.61 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.66 -10.45 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341530746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.625 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds