Wall clock time and date at job start Tue Mar 31 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47619 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47014 * 299.99440 * 3 2 1 6 6 H 1.48500 * 109.47176 * 59.99107 * 3 2 1 7 7 C 1.37880 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00230 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47451 * 184.49776 * 9 7 2 11 11 C 1.46897 * 110.99762 * 64.60220 * 10 9 7 12 12 C 1.53244 * 109.33945 * 172.74916 * 11 10 9 13 13 N 1.47077 * 108.68032 * 53.73364 * 12 11 10 14 14 C 1.34774 * 120.87968 * 128.91756 * 13 12 11 15 15 O 1.21284 * 120.00167 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00070 * 180.02562 * 14 13 12 17 17 H 1.09008 * 110.54086 * 319.92247 * 16 14 13 18 18 C 1.54834 * 110.61267 * 196.88741 * 16 14 13 19 19 C 1.55844 * 103.52005 * 241.48951 * 18 16 14 20 20 H 1.09001 * 115.58365 * 201.11210 * 19 18 16 21 21 C 1.55845 * 105.03062 * 71.72685 * 19 18 16 22 22 C 1.54829 * 103.52404 * 288.27269 * 21 19 18 23 23 C 1.55840 * 110.61277 * 82.78623 * 16 14 13 24 24 H 1.09000 * 115.58653 * 277.39585 * 23 16 14 25 25 N 1.50653 * 101.02952 * 151.50239 * 23 16 14 26 26 C 1.47143 * 118.19242 * 309.15211 * 13 12 11 27 27 C 1.46897 * 110.99848 * 300.30422 * 10 9 7 28 28 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47264 * 64.49559 * 9 7 2 30 30 H 1.09006 * 109.46789 * 304.49748 * 9 7 2 31 31 H 1.08998 * 109.49331 * 52.79293 * 11 10 9 32 32 H 1.08998 * 109.50057 * 292.70924 * 11 10 9 33 33 H 1.08997 * 109.63022 * 173.54305 * 12 11 10 34 34 H 1.09004 * 109.62520 * 293.92663 * 12 11 10 35 35 H 1.08998 * 110.61493 * 0.02562 * 18 16 14 36 36 H 1.09009 * 110.61377 * 122.97949 * 18 16 14 37 37 H 1.09006 * 110.61323 * 46.78521 * 21 19 18 38 38 H 1.08997 * 110.61122 * 169.76342 * 21 19 18 39 39 H 1.09002 * 110.61380 * 241.49693 * 22 21 19 40 40 H 1.08998 * 110.61845 * 118.50817 * 22 21 19 41 41 H 1.00908 * 110.99648 * 62.34749 * 25 23 16 42 42 H 1.08998 * 109.46855 * 291.14086 * 26 13 12 43 43 H 1.09008 * 109.80433 * 170.74971 * 26 13 12 44 44 H 1.08997 * 109.49463 * 307.21141 * 27 10 9 45 45 H 1.09004 * 109.49389 * 67.28915 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2019 -3.6136 0.1098 11 6 2.9046 -3.5816 1.3994 12 6 3.7479 -4.8522 1.5495 13 7 4.6178 -4.9823 0.3707 14 6 5.9433 -5.1837 0.5080 15 8 6.4338 -5.2594 1.6146 16 6 6.8162 -5.3135 -0.7136 17 1 6.3134 -5.9004 -1.4824 18 6 8.1799 -5.9470 -0.3442 19 6 9.2098 -4.8392 -0.7194 20 1 10.2318 -5.1819 -0.8811 21 6 9.0199 -3.7292 0.3579 22 6 7.6563 -3.0957 -0.0114 23 6 7.2043 -3.9076 -1.2626 24 1 6.4617 -3.4307 -1.9023 25 7 8.5327 -4.2066 -1.9073 26 6 4.0022 -4.8813 -0.9620 27 6 3.1489 -3.6096 -1.0132 28 1 -0.4850 0.8400 -0.0004 29 1 0.6866 -2.5928 -0.9272 30 1 0.5650 -2.5226 0.8473 31 1 2.1766 -3.5304 2.2090 32 1 3.5542 -2.7072 1.4381 33 1 4.3589 -4.7820 2.4494 34 1 3.0926 -5.7205 1.6187 35 1 8.2244 -6.1674 0.7223 36 1 8.3556 -6.8489 -0.9308 37 1 8.9826 -4.1656 1.3561 38 1 9.8174 -2.9892 0.2911 39 1 7.7779 -2.0417 -0.2614 40 1 6.9429 -3.2181 0.8036 41 1 8.4281 -4.8706 -2.6599 42 1 3.3715 -5.7528 -1.1378 43 1 4.7792 -4.8319 -1.7249 44 1 2.5981 -3.5788 -1.9533 45 1 3.7951 -2.7348 -0.9410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341530746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:26 Heat of formation + Delta-G solvation = -25.209592 kcal Electronic energy + Delta-G solvation = -25268.001400 eV Core-core repulsion = 21898.733542 eV Total energy + Delta-G solvation = -3369.267858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.31333 -40.25705 -38.72285 -36.03465 -34.34348 -32.57231 -31.59904 -30.85406 -30.42673 -29.67748 -27.18244 -24.88194 -24.37205 -23.41843 -22.13254 -21.78219 -20.68278 -19.46012 -18.52411 -18.34803 -17.78914 -17.16473 -16.92393 -16.66981 -16.00689 -15.78247 -15.56220 -15.09627 -15.04148 -14.39841 -13.92429 -13.82559 -13.64584 -13.52943 -13.34368 -13.04026 -13.01626 -12.91828 -12.80724 -12.63014 -12.50516 -12.43547 -12.20069 -11.99742 -11.93783 -11.83672 -11.79556 -11.62508 -11.06925 -10.85360 -10.63372 -9.80676 -9.71866 -9.06047 -8.18965 -6.37648 1.31975 1.35009 1.44964 1.56366 1.96107 2.33870 3.01146 3.06818 3.29472 3.44181 3.55412 3.67165 3.84804 4.00232 4.07077 4.08214 4.18956 4.24393 4.30408 4.32292 4.35075 4.46583 4.53058 4.59658 4.69304 4.73926 4.76215 4.88788 4.99161 5.02891 5.04374 5.12979 5.16570 5.17732 5.21516 5.23668 5.31313 5.47090 5.52526 5.71634 5.98163 6.15881 6.38972 6.43733 6.45827 6.82703 7.14406 7.34084 8.83656 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.004812 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.674947 B = 5817.851755 C = 6590.022512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.200 3.800 10 N -0.535 5.535 11 C 0.057 3.943 12 C 0.125 3.875 13 N -0.609 5.609 14 C 0.525 3.475 15 O -0.578 6.578 16 C -0.141 4.141 17 H 0.123 0.877 18 C -0.139 4.139 19 C 0.058 3.942 20 H 0.140 0.860 21 C -0.111 4.111 22 C -0.129 4.129 23 C 0.068 3.932 24 H 0.124 0.876 25 N -0.645 5.645 26 C 0.118 3.882 27 C 0.048 3.952 28 H 0.265 0.735 29 H 0.012 0.988 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.012 0.988 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.346 0.654 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.929 -13.032 -4.943 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.069 0.931 9 C 0.073 3.927 10 N -0.258 5.258 11 C -0.072 4.072 12 C 0.002 3.998 13 N -0.341 5.341 14 C 0.315 3.685 15 O -0.459 6.459 16 C -0.163 4.163 17 H 0.141 0.859 18 C -0.178 4.178 19 C -0.051 4.051 20 H 0.158 0.842 21 C -0.149 4.149 22 C -0.167 4.167 23 C -0.042 4.042 24 H 0.142 0.858 25 N -0.272 5.272 26 C -0.004 4.004 27 C -0.081 4.081 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.162 0.838 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 16.112 -12.681 -4.455 20.982 hybrid contribution -0.451 1.316 0.608 1.518 sum 15.660 -11.365 -3.847 19.728 Atomic orbital electron populations 1.70045 1.07362 1.27788 1.51067 1.25709 0.95512 1.02479 0.94588 0.85629 0.78811 0.80030 0.77949 1.19702 1.19990 1.20595 1.21955 0.93089 0.93048 1.51181 0.93071 1.19440 0.91064 0.86386 0.95782 1.62426 1.17076 1.44488 1.01831 1.22172 0.96191 0.95770 0.93079 1.21607 0.92009 0.97519 0.88627 1.48286 1.06905 1.70638 1.08275 1.20782 0.81763 0.74677 0.91317 1.90627 1.73605 1.52835 1.28821 1.23229 0.96804 1.00433 0.95883 0.85910 1.23318 0.91975 0.99177 1.03341 1.24374 0.98748 0.92147 0.89846 0.84223 1.22524 0.96249 0.97999 0.98145 1.22663 0.97866 0.99523 0.96617 1.24215 0.92608 0.92687 0.94733 0.85843 1.65962 1.11698 1.42022 1.07521 1.22062 0.97067 0.98054 0.83222 1.22317 0.94277 0.96305 0.95185 0.92559 0.96951 0.97434 0.91034 0.96925 0.90134 0.89828 0.91045 0.88582 0.92235 0.91101 0.92163 0.93658 0.83753 0.89219 0.87022 0.89866 0.96120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 13.29 21.45 0.28 -53.65 16 2 C 0.02 0.94 5.46 84.66 0.46 1.40 16 3 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.55 -29.98 7.76 25.60 0.20 -29.79 16 8 H 0.05 2.79 5.87 -2.91 -0.02 2.77 16 9 C 0.20 10.10 5.11 85.55 0.44 10.54 16 10 N -0.53 -21.52 4.83 -899.83 -4.35 -25.87 16 11 C 0.06 2.20 5.24 86.39 0.45 2.66 16 12 C 0.13 3.95 6.59 86.35 0.57 4.52 16 13 N -0.61 -17.30 3.02 -817.76 -2.47 -19.77 16 14 C 0.53 14.77 5.29 87.66 0.46 15.23 16 15 O -0.58 -20.09 13.97 -3.04 -0.04 -20.13 16 16 C -0.14 -2.79 2.15 -9.93 -0.02 -2.82 16 17 H 0.12 1.76 6.94 -2.38 -0.02 1.75 16 18 C -0.14 -2.48 5.87 32.20 0.19 -2.29 16 19 C 0.06 0.99 5.59 46.14 0.26 1.25 16 20 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.11 -2.54 6.43 32.20 0.21 -2.34 16 22 C -0.13 -3.47 6.13 32.20 0.20 -3.27 16 23 C 0.07 1.44 4.99 46.14 0.23 1.67 16 24 H 0.12 2.53 7.65 -2.39 -0.02 2.51 16 25 N -0.64 -11.24 7.71 -433.05 -3.34 -14.58 16 26 C 0.12 2.88 6.36 86.34 0.55 3.43 16 27 C 0.05 1.64 5.16 86.38 0.45 2.08 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.01 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.01 0.42 8.07 -2.38 -0.02 0.40 16 31 H 0.07 2.79 8.06 -2.39 -0.02 2.77 16 32 H 0.01 0.55 7.09 -2.39 -0.02 0.53 16 33 H 0.08 2.65 7.06 -2.39 -0.02 2.63 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 1.67 6.36 -2.39 -0.02 1.66 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.52 7.82 -2.38 -0.02 1.51 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.50 5.64 -2.39 -0.01 1.48 16 41 H 0.35 4.36 8.66 -89.69 -0.78 3.58 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.11 1.99 5.13 -2.38 -0.01 1.98 16 44 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 45 H 0.02 0.80 6.64 -2.38 -0.02 0.79 16 Total: -1.00 -66.19 336.23 -3.03 -69.21 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.22 Total: 16.67 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.64 Total: 2.28 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -9.87 Total: -113.87 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.04 Total: -20.13 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.19 -3.03 -69.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341530746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds