Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46676 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00187 * 294.29963 * 10 9 7 12 12 C 1.53237 * 109.34198 * 172.75073 * 11 10 9 13 13 N 1.47073 * 108.52100 * 53.82814 * 12 11 10 14 14 C 1.34783 * 120.88095 * 128.79394 * 13 12 11 15 15 O 1.21278 * 119.99990 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99892 * 0.02562 * 14 13 12 17 17 C 1.53598 * 115.80813 * 281.75073 * 16 14 13 18 18 C 1.53720 * 87.31643 * 267.27135 * 17 16 14 19 19 C 1.53793 * 87.33286 * 334.58206 * 18 17 16 20 20 H 1.08996 * 116.39419 * 144.01642 * 19 18 17 21 21 C 1.54040 * 113.06954 * 281.64762 * 19 18 17 22 22 N 1.47162 * 106.68791 * 119.85787 * 21 19 18 23 23 C 1.49292 * 109.46236 * 341.65963 * 22 21 19 24 24 C 1.47077 * 118.24076 * 308.81681 * 13 12 11 25 25 C 1.46896 * 110.99521 * 170.00078 * 10 9 7 26 26 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 28 28 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 29 29 H 1.09004 * 109.49584 * 292.70902 * 11 10 9 30 30 H 1.08998 * 109.49327 * 52.78505 * 11 10 9 31 31 H 1.09002 * 109.62634 * 294.12218 * 12 11 10 32 32 H 1.09000 * 109.63256 * 173.54002 * 12 11 10 33 33 H 1.08993 * 113.57817 * 21.88045 * 17 16 14 34 34 H 1.09006 * 113.57429 * 152.58251 * 17 16 14 35 35 H 1.08993 * 113.57387 * 89.19265 * 18 17 16 36 36 H 1.08997 * 113.57408 * 219.97347 * 18 17 16 37 37 H 1.09000 * 110.01670 * 239.16403 * 21 19 18 38 38 H 1.09004 * 110.01792 * 0.54984 * 21 19 18 39 39 H 1.00903 * 111.00084 * 219.18420 * 22 21 19 40 40 H 1.09007 * 109.93399 * 242.40581 * 23 22 21 41 41 H 1.08999 * 110.71896 * 120.94324 * 23 22 21 42 42 H 1.09003 * 109.63007 * 291.47628 * 24 13 12 43 43 H 1.08998 * 109.63222 * 170.89400 * 24 13 12 44 44 H 1.09002 * 109.49808 * 307.20791 * 25 10 9 45 45 H 1.09005 * 109.49810 * 67.29189 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9777 -3.6496 -1.2475 12 6 4.0799 -4.7082 -1.1344 13 7 3.4622 -5.9864 -0.7501 14 6 3.7128 -7.1129 -1.4466 15 8 3.1944 -8.1582 -1.1159 16 6 4.6369 -7.0733 -2.6363 17 6 4.0338 -6.5137 -3.9333 18 6 3.6735 -7.9611 -4.3050 19 6 4.8340 -8.4065 -3.3994 20 1 4.6834 -9.3278 -2.8367 21 6 6.2142 -8.2460 -4.0642 22 7 6.9852 -7.3202 -3.2192 23 6 6.0526 -6.5582 -2.3369 24 6 2.5636 -6.0029 0.4141 25 6 1.5211 -4.8933 0.2399 26 1 -0.4850 -0.8401 0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.3165 -3.9002 -2.0771 30 1 3.4282 -2.6728 -1.4233 31 1 4.8006 -4.4066 -0.3743 32 1 4.5818 -4.8184 -2.0956 33 1 3.1648 -5.8762 -3.7705 34 1 4.7708 -6.0622 -4.5975 35 1 2.6938 -8.2731 -3.9432 36 1 3.8294 -8.1923 -5.3587 37 1 6.7180 -9.2112 -4.1160 38 1 6.1001 -7.8302 -5.0654 39 1 7.5372 -6.6908 -3.7825 40 1 6.1132 -5.4936 -2.5634 41 1 6.2917 -6.7260 -1.2868 42 1 3.1385 -5.8258 1.3230 43 1 2.0629 -6.9691 0.4766 44 1 0.9152 -4.8186 1.1430 45 1 0.8801 -5.1266 -0.6103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354523442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = 6.249847 kcal Electronic energy + Delta-G solvation = -24905.594066 eV Core-core repulsion = 21537.690391 eV Total energy + Delta-G solvation = -3367.903674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62926 -39.13380 -37.44996 -34.67250 -34.05434 -32.68224 -31.24894 -29.63361 -28.08153 -26.64573 -25.28598 -24.09474 -23.43237 -22.80028 -21.82476 -20.99393 -19.62627 -18.11670 -17.01722 -16.78707 -16.60382 -16.26919 -15.44725 -14.95567 -14.74126 -14.57755 -14.25571 -13.95346 -13.75091 -13.65290 -13.40415 -13.09860 -12.87987 -12.65635 -12.34642 -12.23206 -11.96391 -11.75488 -11.42141 -11.34748 -11.14965 -11.02748 -10.77728 -10.64323 -10.58175 -10.46398 -10.35764 -10.16361 -9.72001 -8.86786 -8.72371 -8.50903 -8.44906 -7.48803 -6.44559 -4.14602 2.56144 2.94950 3.39365 3.43205 3.56283 3.83340 3.89575 4.12493 4.36959 4.43874 4.53163 4.56496 4.63914 4.89269 5.06925 5.13484 5.18788 5.23281 5.29965 5.33303 5.37717 5.40607 5.44971 5.52718 5.63229 5.64764 5.68681 5.76800 5.79101 5.92293 5.99218 6.06993 6.13162 6.30075 6.32978 6.45253 6.56563 6.88263 6.96689 7.00979 7.43749 7.65236 7.82988 8.16476 8.20143 8.48436 8.78172 9.56714 10.94592 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.003883 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.828875 B = 7209.005515 C = 7764.340113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.077 2.923 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.590 4.590 8 H 0.059 0.941 9 C 0.183 3.817 10 N -0.528 5.528 11 C 0.051 3.949 12 C 0.105 3.895 13 N -0.602 5.602 14 C 0.548 3.452 15 O -0.544 6.544 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.095 4.095 20 H 0.103 0.897 21 C 0.065 3.935 22 N -0.682 5.682 23 C 0.065 3.935 24 C 0.118 3.882 25 C 0.040 3.960 26 H 0.267 0.733 27 H 0.022 0.978 28 H -0.020 1.020 29 H 0.023 0.977 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.342 0.658 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -13.804 -8.460 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.906 3.094 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.057 3.943 10 N -0.253 5.253 11 C -0.078 4.078 12 C -0.017 4.017 13 N -0.335 5.335 14 C 0.335 3.665 15 O -0.422 6.422 16 C -0.131 4.131 17 C -0.160 4.160 18 C -0.165 4.165 19 C -0.115 4.115 20 H 0.121 0.879 21 C -0.064 4.064 22 N -0.311 5.311 23 C -0.063 4.063 24 C -0.004 4.004 25 C -0.090 4.090 26 H 0.078 0.922 27 H 0.040 0.960 28 H -0.002 1.002 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.304 -13.113 -7.401 18.828 hybrid contribution -0.920 -0.997 -1.194 1.807 sum 10.384 -14.110 -8.594 19.514 Atomic orbital electron populations 1.70742 1.06947 1.30495 1.46813 1.25861 0.96465 1.02763 0.93816 0.83424 0.74429 0.74620 0.76971 1.21392 1.21446 1.21286 1.21994 0.94816 0.90811 1.55265 0.92305 1.19842 0.90647 0.88828 0.94940 1.61990 1.27536 1.02339 1.33414 1.22333 0.95107 0.99201 0.91122 1.22185 0.96305 0.82508 1.00751 1.48141 1.46702 1.08483 1.30148 1.19534 0.81027 0.83235 0.82687 1.90659 1.52040 1.30315 1.69151 1.22911 0.95935 1.00224 0.94043 1.22915 1.01192 0.97586 0.94309 1.22841 0.98768 0.95331 0.99542 1.23321 0.94329 0.97344 0.96486 0.87857 1.22349 0.91789 0.97675 0.94575 1.61970 1.23976 1.21161 1.24010 1.22810 0.88086 0.96375 0.99046 1.21761 0.91653 0.99419 0.87565 1.22437 0.95053 0.90617 1.00858 0.92240 0.95996 1.00196 0.95880 0.88316 0.90476 0.89802 0.90543 0.89334 0.89463 0.90887 0.90073 0.93313 0.84212 0.91498 0.90063 0.90744 0.89324 0.90064 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.24 13.65 55.43 0.76 -26.48 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.08 24.56 29.90 -169.99 -5.08 19.48 16 4 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.59 -16.02 8.41 -34.44 -0.29 -16.31 16 8 H 0.06 1.58 7.13 -52.48 -0.37 1.21 16 9 C 0.18 4.56 4.04 -4.97 -0.02 4.54 16 10 N -0.53 -10.82 4.62 -235.76 -1.09 -11.91 16 11 C 0.05 0.92 5.46 -3.70 -0.02 0.90 16 12 C 0.11 1.48 5.83 -3.61 -0.02 1.46 16 13 N -0.60 -9.00 3.01 -172.46 -0.52 -9.52 16 14 C 0.55 8.22 6.78 -10.98 -0.07 8.14 16 15 O -0.54 -9.75 15.78 5.56 0.09 -9.66 16 16 C -0.13 -1.47 0.53 -154.05 -0.08 -1.55 16 17 C -0.12 -1.24 6.09 -26.05 -0.16 -1.40 16 18 C -0.13 -1.27 7.38 -25.94 -0.19 -1.46 16 19 C -0.10 -1.02 4.58 -88.67 -0.41 -1.43 16 20 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 21 C 0.06 0.56 6.78 -3.14 -0.02 0.54 16 22 N -0.68 -6.25 7.40 -110.80 -0.82 -7.07 16 23 C 0.07 0.67 5.70 -2.18 -0.01 0.66 16 24 C 0.12 1.84 6.60 -3.60 -0.02 1.82 16 25 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 26 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 27 H 0.02 0.58 7.83 -51.93 -0.41 0.18 16 28 H -0.02 -0.52 7.99 -51.93 -0.42 -0.94 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 1.89 6.67 -51.93 -0.35 1.55 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.97 3.88 -51.93 -0.20 0.77 16 33 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.09 0.75 7.59 -51.93 -0.39 0.35 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.35 7.41 -51.93 -0.39 -0.03 16 39 H 0.34 2.44 8.91 -39.29 -0.35 2.09 16 40 H 0.07 0.59 6.53 -51.93 -0.34 0.25 16 41 H 0.08 0.95 7.99 -51.93 -0.42 0.53 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 44 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -31.44 342.05 -10.24 -41.67 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.28 Total: 1.43 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.44 Total: -3.09 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -1.67 Total: -54.98 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.44 -10.24 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354523442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.924 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds