Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46676 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00187 * 294.29963 * 10 9 7 12 12 C 1.53237 * 109.34198 * 172.75073 * 11 10 9 13 13 N 1.47073 * 108.52100 * 53.82814 * 12 11 10 14 14 C 1.34783 * 120.88095 * 128.79394 * 13 12 11 15 15 O 1.21278 * 119.99990 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99892 * 0.02562 * 14 13 12 17 17 C 1.53598 * 115.80813 * 281.75073 * 16 14 13 18 18 C 1.53720 * 87.31643 * 267.27135 * 17 16 14 19 19 C 1.53793 * 87.33286 * 334.58206 * 18 17 16 20 20 H 1.08996 * 116.39419 * 144.01642 * 19 18 17 21 21 C 1.54040 * 113.06954 * 281.64762 * 19 18 17 22 22 N 1.47162 * 106.68791 * 119.85787 * 21 19 18 23 23 C 1.49292 * 109.46236 * 341.65963 * 22 21 19 24 24 C 1.47077 * 118.24076 * 308.81681 * 13 12 11 25 25 C 1.46896 * 110.99521 * 170.00078 * 10 9 7 26 26 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 28 28 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 29 29 H 1.09004 * 109.49584 * 292.70902 * 11 10 9 30 30 H 1.08998 * 109.49327 * 52.78505 * 11 10 9 31 31 H 1.09002 * 109.62634 * 294.12218 * 12 11 10 32 32 H 1.09000 * 109.63256 * 173.54002 * 12 11 10 33 33 H 1.08993 * 113.57817 * 21.88045 * 17 16 14 34 34 H 1.09006 * 113.57429 * 152.58251 * 17 16 14 35 35 H 1.08993 * 113.57387 * 89.19265 * 18 17 16 36 36 H 1.08997 * 113.57408 * 219.97347 * 18 17 16 37 37 H 1.09000 * 110.01670 * 239.16403 * 21 19 18 38 38 H 1.09004 * 110.01792 * 0.54984 * 21 19 18 39 39 H 1.00903 * 111.00084 * 219.18420 * 22 21 19 40 40 H 1.09007 * 109.93399 * 242.40581 * 23 22 21 41 41 H 1.08999 * 110.71896 * 120.94324 * 23 22 21 42 42 H 1.09003 * 109.63007 * 291.47628 * 24 13 12 43 43 H 1.08998 * 109.63222 * 170.89400 * 24 13 12 44 44 H 1.09002 * 109.49808 * 307.20791 * 25 10 9 45 45 H 1.09005 * 109.49810 * 67.29189 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9777 -3.6496 -1.2475 12 6 4.0799 -4.7082 -1.1344 13 7 3.4622 -5.9864 -0.7501 14 6 3.7128 -7.1129 -1.4466 15 8 3.1944 -8.1582 -1.1159 16 6 4.6369 -7.0733 -2.6363 17 6 4.0338 -6.5137 -3.9333 18 6 3.6735 -7.9611 -4.3050 19 6 4.8340 -8.4065 -3.3994 20 1 4.6834 -9.3278 -2.8367 21 6 6.2142 -8.2460 -4.0642 22 7 6.9852 -7.3202 -3.2192 23 6 6.0526 -6.5582 -2.3369 24 6 2.5636 -6.0029 0.4141 25 6 1.5211 -4.8933 0.2399 26 1 -0.4850 -0.8401 0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.3165 -3.9002 -2.0771 30 1 3.4282 -2.6728 -1.4233 31 1 4.8006 -4.4066 -0.3743 32 1 4.5818 -4.8184 -2.0956 33 1 3.1648 -5.8762 -3.7705 34 1 4.7708 -6.0622 -4.5975 35 1 2.6938 -8.2731 -3.9432 36 1 3.8294 -8.1923 -5.3587 37 1 6.7180 -9.2112 -4.1160 38 1 6.1001 -7.8302 -5.0654 39 1 7.5372 -6.6908 -3.7825 40 1 6.1132 -5.4936 -2.5634 41 1 6.2917 -6.7260 -1.2868 42 1 3.1385 -5.8258 1.3230 43 1 2.0629 -6.9691 0.4766 44 1 0.9152 -4.8186 1.1430 45 1 0.8801 -5.1266 -0.6103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354523442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = -17.016292 kcal Electronic energy + Delta-G solvation = -24906.602961 eV Core-core repulsion = 21537.690391 eV Total energy + Delta-G solvation = -3368.912570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.58582 -40.35391 -38.85723 -36.27969 -34.81492 -34.59315 -32.56962 -30.65850 -29.64946 -27.60673 -26.90841 -25.01507 -24.85237 -24.23595 -23.21188 -22.10430 -20.82348 -19.25440 -18.87892 -17.98198 -17.58643 -17.23752 -16.56545 -16.35330 -16.11897 -16.00404 -15.66610 -15.42690 -15.27625 -14.75742 -14.48384 -14.12725 -14.09319 -13.74276 -13.56764 -13.43790 -13.16585 -13.08351 -12.94247 -12.81196 -12.54864 -12.39213 -12.22342 -12.06524 -11.91362 -11.87267 -11.40357 -11.24761 -10.89961 -10.83505 -10.58744 -9.89773 -9.39818 -9.21610 -8.68141 -6.39565 1.39017 1.56092 1.64943 1.77393 1.81418 2.56432 2.97883 3.04094 3.09713 3.16540 3.27531 3.50751 3.64266 3.75339 3.85205 3.90252 4.08217 4.11891 4.13832 4.28221 4.31339 4.38491 4.45540 4.53309 4.59034 4.61422 4.70021 4.72115 4.75110 4.80405 4.88024 4.95109 4.95784 4.97831 5.02472 5.22184 5.22888 5.32954 5.71344 5.74842 5.91424 6.24290 6.29114 6.38784 6.46616 6.57481 6.96368 7.41766 8.70865 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.003883 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.828875 B = 7209.005515 C = 7764.340113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.037 4.037 3 Si 1.126 2.874 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.595 4.595 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.052 3.948 12 C 0.119 3.881 13 N -0.605 5.605 14 C 0.545 3.455 15 O -0.579 6.579 16 C -0.134 4.134 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.097 4.097 20 H 0.079 0.921 21 C 0.071 3.929 22 N -0.687 5.687 23 C 0.070 3.930 24 C 0.126 3.874 25 C 0.043 3.957 26 H 0.253 0.747 27 H 0.000 1.000 28 H -0.046 1.046 29 H 0.014 0.986 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.357 0.643 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 -13.513 -9.891 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.235 4.235 3 Si 0.947 3.053 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.633 4.633 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.257 5.257 11 C -0.077 4.077 12 C -0.003 4.003 13 N -0.337 5.337 14 C 0.333 3.667 15 O -0.459 6.459 16 C -0.138 4.138 17 C -0.151 4.151 18 C -0.162 4.162 19 C -0.117 4.117 20 H 0.098 0.902 21 C -0.057 4.057 22 N -0.319 5.319 23 C -0.059 4.059 24 C 0.003 3.997 25 C -0.086 4.086 26 H 0.062 0.938 27 H 0.018 0.982 28 H -0.028 1.028 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.175 0.825 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 14.160 -12.848 -8.845 21.067 hybrid contribution -1.843 -1.196 -0.734 2.316 sum 12.317 -14.044 -9.579 20.993 Atomic orbital electron populations 1.70880 1.08143 1.29658 1.49172 1.27421 0.96433 1.06807 0.92790 0.82821 0.74501 0.70704 0.77265 1.18829 1.20665 1.20871 1.22297 0.95112 0.91650 1.54207 0.91892 1.19551 0.90763 0.90320 0.92637 1.61935 1.26543 1.02182 1.35017 1.22371 0.95595 1.00150 0.89573 1.22156 0.94723 0.80670 1.02777 1.48220 1.46546 1.09009 1.29928 1.20170 0.80877 0.82466 0.83150 1.90640 1.53500 1.31529 1.70192 1.22948 0.96079 1.01652 0.93090 1.22952 1.01156 0.97369 0.93648 1.22789 0.97382 0.95196 1.00811 1.23349 0.96054 0.95834 0.96428 0.90235 1.22344 0.90077 0.98089 0.95228 1.61906 1.23835 1.21525 1.24590 1.22734 0.87029 0.97498 0.98621 1.21626 0.91368 0.98250 0.88442 1.22452 0.95644 0.90039 1.00434 0.93817 0.98216 1.02819 0.96747 0.89386 0.89503 0.86748 0.92103 0.86448 0.91809 0.88349 0.89664 0.90901 0.82516 0.89586 0.91649 0.89781 0.89269 0.89965 0.96714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.65 21.45 0.29 -56.94 16 2 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 3 Si 1.13 48.53 29.90 68.60 2.05 50.59 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.59 -32.46 8.41 25.60 0.22 -32.25 16 8 H 0.06 3.33 7.13 -2.91 -0.02 3.31 16 9 C 0.19 9.99 4.04 85.56 0.35 10.33 16 10 N -0.53 -22.03 4.62 -899.81 -4.16 -26.18 16 11 C 0.05 1.83 5.46 86.38 0.47 2.30 16 12 C 0.12 3.11 5.83 86.35 0.50 3.62 16 13 N -0.61 -17.55 3.01 -817.94 -2.46 -20.01 16 14 C 0.54 15.98 6.78 87.66 0.59 16.58 16 15 O -0.58 -20.96 15.78 -3.02 -0.05 -21.01 16 16 C -0.13 -2.84 0.53 -51.88 -0.03 -2.87 16 17 C -0.11 -2.01 6.09 31.04 0.19 -1.82 16 18 C -0.12 -2.25 7.38 31.10 0.23 -2.02 16 19 C -0.10 -1.91 4.58 -9.53 -0.04 -1.96 16 20 H 0.08 1.95 7.87 -2.39 -0.02 1.93 16 21 C 0.07 0.99 6.78 86.60 0.59 1.58 16 22 N -0.69 -10.24 7.40 -504.45 -3.73 -13.98 16 23 C 0.07 1.23 5.70 86.04 0.49 1.72 16 24 C 0.13 3.89 6.60 86.35 0.57 4.46 16 25 C 0.04 1.56 5.62 86.39 0.49 2.05 16 26 H 0.25 15.67 7.22 -92.71 -0.67 15.00 16 27 H 0.00 -0.01 7.83 -2.39 -0.02 -0.03 16 28 H -0.05 -2.56 7.99 -2.39 -0.02 -2.58 16 29 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.09 3.30 6.67 -2.39 -0.02 3.28 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 2.30 3.88 -2.39 -0.01 2.29 16 33 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 34 H 0.12 1.44 7.59 -2.38 -0.02 1.42 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.70 7.41 -2.38 -0.02 0.68 16 39 H 0.36 3.58 8.91 -89.69 -0.80 2.78 16 40 H 0.09 1.16 6.53 -2.38 -0.02 1.15 16 41 H 0.07 1.38 7.99 -2.39 -0.02 1.36 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.09 2.78 7.06 -2.39 -0.02 2.76 16 44 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 45 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -69.59 342.05 -2.70 -72.28 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.29 Total: 15.17 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.07 Total: 0.09 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -10.06 Total: -117.12 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.59 kcal Total: -69.59 -2.70 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354523442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.269 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds