Wall clock time and date at job start Tue Mar 31 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38670 * 120.41857 * 2 1 4 4 C 1.38627 * 118.42142 * 179.70971 * 3 2 1 5 5 C 1.38225 * 119.16127 * 0.50295 * 4 3 2 6 6 C 1.50702 * 119.62222 * 179.75361 * 5 4 3 7 7 N 1.46900 * 109.46790 * 94.73070 * 6 5 4 8 8 C 1.46903 * 111.00131 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47302 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47135 * 59.99463 * 9 8 7 11 11 O 1.42897 * 109.46674 * 299.99470 * 9 8 7 12 12 C 1.53004 * 109.46799 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.46619 * 184.99872 * 12 9 8 14 14 C 1.46901 * 111.00443 * 66.04574 * 13 12 9 15 15 C 1.46906 * 110.99820 * 189.99887 * 13 12 9 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99253 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47279 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47075 * 119.99817 * 20 18 16 23 23 H 1.48496 * 109.46942 * 240.00005 * 20 18 16 24 24 N 1.31858 * 120.76203 * 359.48545 * 5 4 3 25 25 C 1.31880 * 121.72511 * 0.26590 * 24 5 4 26 26 H 1.09003 * 109.47119 * 270.02846 * 1 2 3 27 27 H 1.09003 * 109.46755 * 30.02823 * 1 2 3 28 28 H 1.09008 * 109.47063 * 150.02459 * 1 2 3 29 29 H 1.08006 * 120.79128 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.42122 * 180.27654 * 4 3 2 31 31 H 1.09000 * 109.46904 * 334.73211 * 6 5 4 32 32 H 1.08998 * 109.47520 * 214.72768 * 6 5 4 33 33 H 1.00901 * 111.00381 * 303.95622 * 7 6 5 34 34 H 1.08996 * 109.47237 * 59.99345 * 8 7 6 35 35 H 1.09009 * 109.46499 * 299.99967 * 8 7 6 36 36 H 0.96701 * 114.00549 * 300.00026 * 11 9 8 37 37 H 1.08994 * 109.47270 * 64.99737 * 12 9 8 38 38 H 1.08999 * 109.47017 * 304.99614 * 12 9 8 39 39 H 1.09002 * 109.47401 * 183.95136 * 14 13 12 40 40 H 1.09001 * 109.46874 * 63.95149 * 14 13 12 41 41 H 1.09004 * 109.46970 * 303.95282 * 14 13 12 42 42 H 1.08997 * 109.46995 * 289.99871 * 15 13 12 43 43 H 1.09001 * 109.46848 * 49.99877 * 15 13 12 44 44 H 0.96999 * 119.99606 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.62106 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 0.0062 5 6 4.2256 -0.0823 0.0015 6 6 5.7312 -0.1469 0.0025 7 7 6.2143 -0.2878 1.3826 8 6 7.6813 -0.3536 1.4228 9 6 8.1457 -0.5005 2.8732 10 1 7.7293 -1.4141 3.2972 11 8 7.6984 0.6242 3.6327 12 6 9.6736 -0.5696 2.9149 13 7 10.1145 -0.8304 4.2916 14 6 9.6920 -2.1653 4.7359 15 6 11.5693 -0.6694 4.4180 16 6 11.9536 -0.7008 5.8748 17 1 11.1932 -0.8280 6.6312 18 6 13.2758 -0.5671 6.2421 19 7 14.2016 -0.4127 5.3209 20 14 13.7522 -0.6067 8.0478 21 1 12.5341 -0.7905 8.8772 22 1 14.6896 -1.7331 8.2878 23 1 14.4113 0.6726 8.4140 24 7 3.5255 -1.1996 0.0015 25 6 2.2067 -1.1916 0.0006 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6889 2.1424 -0.0004 30 1 4.1735 2.0592 0.0109 31 1 6.1344 0.7679 -0.4319 32 1 6.0586 -1.0037 -0.5863 33 1 5.8702 0.4612 1.9645 34 1 8.0977 0.5599 0.9983 35 1 8.0225 -1.2117 0.8437 36 1 8.0310 1.4734 3.3113 37 1 10.0897 0.3782 2.5735 38 1 10.0188 -1.3733 2.2644 39 1 9.9698 -2.3054 5.7806 40 1 10.1819 -2.9235 4.1249 41 1 8.6109 -2.2576 4.6319 42 1 12.0716 -1.4813 3.8921 43 1 11.8683 0.2846 3.9837 44 1 15.1318 -0.3183 5.5793 45 1 1.6672 -2.1272 0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356586530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:31 Heat of formation + Delta-G solvation = -15.415782 kcal Electronic energy + Delta-G solvation = -22540.756403 eV Core-core repulsion = 19171.913236 eV Total energy + Delta-G solvation = -3368.843166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57707 -38.33298 -36.20006 -35.18659 -33.67979 -32.51158 -32.26720 -30.14233 -28.32367 -27.02043 -26.00968 -24.64098 -23.75605 -23.04278 -21.63139 -21.20709 -20.13369 -17.13420 -16.98970 -16.45346 -15.96815 -15.77386 -15.41605 -15.22636 -14.84493 -14.66750 -14.30282 -14.12705 -13.82117 -13.49034 -13.37987 -13.25712 -12.88555 -12.80417 -12.49401 -12.32990 -11.96596 -11.83717 -11.71743 -11.29948 -11.08472 -10.86492 -10.73517 -10.64082 -10.25286 -10.06881 -10.00108 -9.68232 -9.57325 -9.16149 -9.05550 -8.52406 -8.41763 -7.16107 -6.00743 -4.01371 0.76405 1.00389 3.33035 3.39379 3.40244 3.46256 3.94037 4.14037 4.41632 4.46076 4.47195 4.59920 4.66955 4.71815 4.90676 4.99550 5.12330 5.16063 5.21333 5.22618 5.32870 5.38108 5.42972 5.47506 5.54990 5.63189 5.69760 5.76979 5.80301 5.93523 6.09074 6.23524 6.37233 6.40379 6.46095 6.81032 6.82386 7.25393 7.29759 7.35748 7.78345 7.83259 7.97810 8.12599 8.23628 8.58490 9.07149 9.62797 11.10322 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041074 B = 0.002141 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.540787 B =13077.675286 C =13209.197211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.143 4.143 3 C -0.077 4.077 4 C -0.163 4.163 5 C 0.129 3.871 6 C 0.108 3.892 7 N -0.675 5.675 8 C 0.029 3.971 9 C 0.114 3.886 10 H 0.105 0.895 11 O -0.546 6.546 12 C 0.025 3.975 13 N -0.530 5.530 14 C 0.036 3.964 15 C 0.192 3.808 16 C -0.504 4.504 17 H 0.065 0.935 18 C 0.053 3.947 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 N -0.461 5.461 25 C 0.100 3.900 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.348 0.652 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.365 0.635 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.010 0.990 41 H 0.048 0.952 42 H -0.011 1.011 43 H 0.028 0.972 44 H 0.260 0.740 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.567 3.040 -14.546 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C -0.103 4.103 4 C -0.183 4.183 5 C -0.010 4.010 6 C -0.021 4.021 7 N -0.307 5.307 8 C -0.101 4.101 9 C 0.054 3.946 10 H 0.123 0.877 11 O -0.350 6.350 12 C -0.104 4.104 13 N -0.255 5.255 14 C -0.112 4.112 15 C 0.067 3.933 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.148 4.148 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.169 5.169 25 C -0.058 4.058 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.211 0.789 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.007 0.993 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.505 1.451 -13.903 28.212 hybrid contribution 0.955 1.554 -0.210 1.836 sum -23.550 3.005 -14.113 27.619 Atomic orbital electron populations 1.20720 0.90227 1.03043 1.02690 1.20966 0.97620 0.94355 1.01567 1.21457 0.93943 0.98198 0.96714 1.21998 0.95290 0.99001 1.02015 1.21114 0.96203 0.88319 0.95330 1.20788 0.88290 1.01464 0.91565 1.60296 1.09266 1.52668 1.08484 1.22710 0.87368 1.01136 0.98899 1.22013 0.93218 0.90739 0.88649 0.87736 1.86620 1.74121 1.16280 1.57941 1.22700 0.94681 1.00800 0.92264 1.62033 1.17770 1.27513 1.18136 1.22258 0.98170 0.89178 1.01625 1.19752 0.80075 0.95999 0.97462 1.21221 0.92271 1.48681 0.92052 0.91728 1.25006 0.96503 0.95541 0.97762 1.69973 1.00872 1.50576 1.32642 0.86428 0.78449 0.77472 0.85011 1.19607 1.21151 1.21051 1.67499 1.07905 1.31024 1.10472 1.22704 0.89794 0.97487 0.95781 0.90810 0.91415 0.91154 0.84909 0.84940 0.93713 0.89267 0.83334 0.94874 0.90089 0.78862 0.91301 0.95263 0.90832 0.97181 0.93361 0.99274 0.95419 0.93047 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.01 0.36 -0.16 16 2 C -0.14 -1.11 5.90 -104.48 -0.62 -1.72 16 3 C -0.08 -0.59 9.86 -39.28 -0.39 -0.98 16 4 C -0.16 -1.40 9.72 -39.44 -0.38 -1.78 16 5 C 0.13 1.37 6.29 -82.58 -0.52 0.85 16 6 C 0.11 1.09 5.99 -4.97 -0.03 1.06 16 7 N -0.67 -7.86 6.49 -115.05 -0.75 -8.61 16 8 C 0.03 0.34 5.39 -3.82 -0.02 0.32 16 9 C 0.11 1.67 3.20 -26.73 -0.09 1.59 16 10 H 0.10 1.70 6.26 -51.93 -0.33 1.38 16 11 O -0.55 -8.37 12.62 -35.23 -0.44 -8.82 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.43 16 13 N -0.53 -11.73 4.70 -244.37 -1.15 -12.88 16 14 C 0.04 0.74 9.17 60.07 0.55 1.29 16 15 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 16 C -0.50 -14.47 8.52 -34.44 -0.29 -14.77 16 17 H 0.06 1.86 7.10 -52.48 -0.37 1.48 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 20 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 N -0.46 -5.48 10.27 -9.47 -0.10 -5.57 16 25 C 0.10 0.94 10.86 -17.55 -0.19 0.75 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 28 H 0.07 0.27 8.09 -51.92 -0.42 -0.15 16 29 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.04 0.37 8.04 -51.93 -0.42 -0.05 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.35 4.03 8.11 -39.29 -0.32 3.71 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.37 4.43 9.05 45.56 0.41 4.84 16 37 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 39 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.05 0.87 6.21 -51.93 -0.32 0.55 16 42 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 43 H 0.03 0.78 7.93 -51.93 -0.41 0.36 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -33.39 371.07 -9.61 -43.00 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.73 Total: 3.24 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.75 Total: -6.62 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -1.26 Total: -53.41 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.44 Total: -8.82 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.39 -9.61 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356586530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.588 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds