Wall clock time and date at job start Tue Mar 31 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38670 * 120.41857 * 2 1 4 4 C 1.38627 * 118.42142 * 179.70971 * 3 2 1 5 5 C 1.38225 * 119.16127 * 0.50295 * 4 3 2 6 6 C 1.50702 * 119.62222 * 179.75361 * 5 4 3 7 7 N 1.46900 * 109.46790 * 94.73070 * 6 5 4 8 8 C 1.46903 * 111.00131 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47302 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47135 * 59.99463 * 9 8 7 11 11 O 1.42897 * 109.46674 * 299.99470 * 9 8 7 12 12 C 1.53004 * 109.46799 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.46619 * 184.99872 * 12 9 8 14 14 C 1.46901 * 111.00443 * 66.04574 * 13 12 9 15 15 C 1.46906 * 110.99820 * 189.99887 * 13 12 9 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31515 * 119.99253 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47279 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47075 * 119.99817 * 20 18 16 23 23 H 1.48496 * 109.46942 * 240.00005 * 20 18 16 24 24 N 1.31858 * 120.76203 * 359.48545 * 5 4 3 25 25 C 1.31880 * 121.72511 * 0.26590 * 24 5 4 26 26 H 1.09003 * 109.47119 * 270.02846 * 1 2 3 27 27 H 1.09003 * 109.46755 * 30.02823 * 1 2 3 28 28 H 1.09008 * 109.47063 * 150.02459 * 1 2 3 29 29 H 1.08006 * 120.79128 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.42122 * 180.27654 * 4 3 2 31 31 H 1.09000 * 109.46904 * 334.73211 * 6 5 4 32 32 H 1.08998 * 109.47520 * 214.72768 * 6 5 4 33 33 H 1.00901 * 111.00381 * 303.95622 * 7 6 5 34 34 H 1.08996 * 109.47237 * 59.99345 * 8 7 6 35 35 H 1.09009 * 109.46499 * 299.99967 * 8 7 6 36 36 H 0.96701 * 114.00549 * 300.00026 * 11 9 8 37 37 H 1.08994 * 109.47270 * 64.99737 * 12 9 8 38 38 H 1.08999 * 109.47017 * 304.99614 * 12 9 8 39 39 H 1.09002 * 109.47401 * 183.95136 * 14 13 12 40 40 H 1.09001 * 109.46874 * 63.95149 * 14 13 12 41 41 H 1.09004 * 109.46970 * 303.95282 * 14 13 12 42 42 H 1.08997 * 109.46995 * 289.99871 * 15 13 12 43 43 H 1.09001 * 109.46848 * 49.99877 * 15 13 12 44 44 H 0.96999 * 119.99606 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.62106 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 0.0062 5 6 4.2256 -0.0823 0.0015 6 6 5.7312 -0.1469 0.0025 7 7 6.2143 -0.2878 1.3826 8 6 7.6813 -0.3536 1.4228 9 6 8.1457 -0.5005 2.8732 10 1 7.7293 -1.4141 3.2972 11 8 7.6984 0.6242 3.6327 12 6 9.6736 -0.5696 2.9149 13 7 10.1145 -0.8304 4.2916 14 6 9.6920 -2.1653 4.7359 15 6 11.5693 -0.6694 4.4180 16 6 11.9536 -0.7008 5.8748 17 1 11.1932 -0.8280 6.6312 18 6 13.2758 -0.5671 6.2421 19 7 14.2016 -0.4127 5.3209 20 14 13.7522 -0.6067 8.0478 21 1 12.5341 -0.7905 8.8772 22 1 14.6896 -1.7331 8.2878 23 1 14.4113 0.6726 8.4140 24 7 3.5255 -1.1996 0.0015 25 6 2.2067 -1.1916 0.0006 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6889 2.1424 -0.0004 30 1 4.1735 2.0592 0.0109 31 1 6.1344 0.7679 -0.4319 32 1 6.0586 -1.0037 -0.5863 33 1 5.8702 0.4612 1.9645 34 1 8.0977 0.5599 0.9983 35 1 8.0225 -1.2117 0.8437 36 1 8.0310 1.4734 3.3113 37 1 10.0897 0.3782 2.5735 38 1 10.0188 -1.3733 2.2644 39 1 9.9698 -2.3054 5.7806 40 1 10.1819 -2.9235 4.1249 41 1 8.6109 -2.2576 4.6319 42 1 12.0716 -1.4813 3.8921 43 1 11.8683 0.2846 3.9837 44 1 15.1318 -0.3183 5.5793 45 1 1.6672 -2.1272 0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356586530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:31 Heat of formation + Delta-G solvation = -41.927662 kcal Electronic energy + Delta-G solvation = -22541.906044 eV Core-core repulsion = 19171.913236 eV Total energy + Delta-G solvation = -3369.992808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22259 -39.61882 -37.55932 -36.33176 -34.62844 -34.35189 -32.96301 -31.30566 -29.48879 -28.71027 -27.29859 -25.82439 -24.62235 -24.15997 -22.66003 -22.25851 -21.74598 -18.58311 -17.97906 -17.65731 -17.19557 -16.84897 -16.69166 -16.10473 -16.02439 -15.96831 -15.63301 -15.28332 -15.00208 -14.71024 -14.37998 -14.05195 -13.94511 -13.77008 -13.41304 -13.30557 -13.18164 -13.11968 -12.92898 -12.69931 -12.57937 -12.52250 -12.39459 -12.33131 -12.01276 -11.62463 -11.40261 -10.77271 -10.69819 -10.62926 -10.30884 -9.76583 -9.36434 -8.96907 -8.21491 -6.31160 0.12516 0.38327 1.40446 1.40928 1.55162 2.39849 2.67397 3.07301 3.11312 3.35754 3.51349 3.68320 3.82099 3.95750 4.00681 4.08302 4.10057 4.12674 4.26299 4.40315 4.42372 4.52812 4.55638 4.67175 4.69644 4.72818 4.79745 4.81768 4.84494 4.93604 5.05160 5.15411 5.16652 5.18636 5.21715 5.31629 5.37937 5.64680 5.80731 5.95248 6.04972 6.31277 6.38841 6.63257 6.85035 6.96576 7.11413 7.38515 8.89689 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041074 B = 0.002141 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.540787 B =13077.675286 C =13209.197211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.141 4.141 3 C -0.083 4.083 4 C -0.164 4.164 5 C 0.104 3.896 6 C 0.113 3.887 7 N -0.686 5.686 8 C 0.041 3.959 9 C 0.129 3.871 10 H 0.090 0.910 11 O -0.560 6.560 12 C 0.025 3.975 13 N -0.541 5.541 14 C 0.040 3.960 15 C 0.207 3.793 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.277 1.277 24 N -0.498 5.498 25 C 0.079 3.921 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.348 0.652 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.380 0.620 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.055 0.945 40 H 0.010 0.990 41 H 0.075 0.925 42 H -0.039 1.039 43 H 0.006 0.994 44 H 0.265 0.735 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.253 4.015 -14.456 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C -0.108 4.108 4 C -0.184 4.184 5 C -0.034 4.034 6 C -0.016 4.016 7 N -0.319 5.319 8 C -0.089 4.089 9 C 0.069 3.931 10 H 0.108 0.892 11 O -0.366 6.366 12 C -0.104 4.104 13 N -0.265 5.265 14 C -0.108 4.108 15 C 0.081 3.919 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.202 1.202 24 N -0.207 5.207 25 C -0.078 4.078 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.178 0.822 30 H 0.170 0.830 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.228 0.772 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.093 0.907 42 H -0.021 1.021 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -26.215 2.433 -13.832 29.740 hybrid contribution 1.393 1.264 -0.297 1.904 sum -24.821 3.696 -14.129 28.799 Atomic orbital electron populations 1.20780 0.88063 1.04226 1.03382 1.21304 0.99194 0.93840 0.99964 1.21858 0.93790 0.99346 0.95835 1.22238 0.96069 0.98939 1.01192 1.21247 0.96340 0.88957 0.96832 1.20758 0.88453 1.01927 0.90468 1.60235 1.08919 1.53050 1.09653 1.22504 0.87772 1.02101 0.96517 1.21771 0.90644 0.90227 0.90489 0.89227 1.86580 1.74241 1.17169 1.58631 1.22817 0.96858 1.00989 0.89749 1.61944 1.14721 1.28530 1.21274 1.22222 0.99737 0.88422 1.00402 1.19410 0.82755 0.93673 0.96065 1.21505 0.92640 1.49016 0.92986 0.92171 1.25923 0.96392 0.94842 1.02628 1.70087 1.01354 1.51087 1.34958 0.85316 0.78241 0.77820 0.79131 1.18946 1.20327 1.20232 1.67430 1.09256 1.32206 1.11791 1.23046 0.89414 0.98964 0.96381 0.90194 0.90019 0.90256 0.82210 0.83015 0.91688 0.90339 0.83310 0.93093 0.89963 0.77207 0.90988 0.94874 0.92657 0.97132 0.90697 1.02108 0.97587 0.92666 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.04 71.24 0.72 -0.06 16 2 C -0.14 -1.95 5.90 -19.77 -0.12 -2.07 16 3 C -0.08 -1.08 9.86 22.47 0.22 -0.86 16 4 C -0.16 -2.55 9.72 22.36 0.22 -2.33 16 5 C 0.10 2.14 6.29 42.55 0.27 2.41 16 6 C 0.11 2.18 5.99 85.56 0.51 2.69 16 7 N -0.69 -15.22 6.49 -517.92 -3.36 -18.58 16 8 C 0.04 0.90 5.39 86.30 0.47 1.37 16 9 C 0.13 3.66 3.20 30.60 0.10 3.76 16 10 H 0.09 2.84 6.26 -2.39 -0.01 2.83 16 11 O -0.56 -16.48 12.62 -148.98 -1.88 -18.36 16 12 C 0.03 0.87 4.60 86.30 0.40 1.27 16 13 N -0.54 -24.10 4.70 -927.04 -4.36 -28.46 16 14 C 0.04 1.66 9.17 127.69 1.17 2.83 16 15 C 0.21 11.31 4.72 85.55 0.40 11.71 16 16 C -0.52 -30.52 8.52 25.60 0.22 -30.30 16 17 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 18 C 0.00 0.00 5.46 84.65 0.46 0.46 16 19 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 20 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 N -0.50 -11.81 10.27 -183.88 -1.89 -13.69 16 25 C 0.08 1.45 10.86 84.67 0.92 2.37 16 26 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 0.38 8.10 -2.39 -0.02 0.36 16 28 H 0.08 0.44 8.09 -2.38 -0.02 0.42 16 29 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 30 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.07 0.96 8.04 -2.39 -0.02 0.94 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.35 7.62 8.11 -89.69 -0.73 6.90 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.38 8.64 9.05 -74.06 -0.67 7.97 16 37 H 0.07 2.44 7.93 -2.39 -0.02 2.42 16 38 H 0.03 1.13 8.12 -2.39 -0.02 1.12 16 39 H 0.05 2.44 6.86 -2.39 -0.02 2.42 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 41 H 0.07 2.65 6.21 -2.38 -0.01 2.64 16 42 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 43 H 0.01 0.35 7.93 -2.39 -0.02 0.33 16 44 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -72.44 371.07 -3.64 -76.08 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.42 Total: 19.13 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.95 Total: -6.77 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -9.32 Total: -117.31 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.88 Total: -18.36 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.44 -3.64 -76.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356586530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.155 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds