Wall clock time and date at job start Tue Mar 31 2020 07:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38669 * 120.42108 * 2 1 4 4 C 1.38627 * 118.42533 * 179.70701 * 3 2 1 5 5 C 1.38232 * 119.15816 * 0.51312 * 4 3 2 6 6 C 1.50693 * 119.61963 * 179.75192 * 5 4 3 7 7 N 1.46901 * 109.47360 * 94.72888 * 6 5 4 8 8 C 1.46899 * 111.00076 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46798 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47555 * 304.99556 * 9 8 7 11 11 O 1.42901 * 109.47612 * 65.00079 * 9 8 7 12 12 C 1.53000 * 109.47000 * 185.00066 * 9 8 7 13 13 N 1.46905 * 109.47114 * 180.02562 * 12 9 8 14 14 C 1.46900 * 110.99850 * 293.94896 * 13 12 9 15 15 C 1.46906 * 111.00051 * 169.99929 * 13 12 9 16 16 C 1.50699 * 109.47140 * 189.99841 * 15 13 12 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 13 19 19 N 1.31522 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46950 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47074 * 119.99839 * 20 18 16 23 23 H 1.48505 * 109.46997 * 239.99833 * 20 18 16 24 24 N 1.31861 * 120.76095 * 359.47801 * 5 4 3 25 25 C 1.31881 * 121.72437 * 0.27405 * 24 5 4 26 26 H 1.09003 * 109.47288 * 270.02253 * 1 2 3 27 27 H 1.08998 * 109.47517 * 30.01978 * 1 2 3 28 28 H 1.09001 * 109.47522 * 150.01833 * 1 2 3 29 29 H 1.08005 * 120.78910 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.42511 * 180.28425 * 4 3 2 31 31 H 1.09005 * 109.47183 * 334.72682 * 6 5 4 32 32 H 1.09001 * 109.47380 * 214.73032 * 6 5 4 33 33 H 1.00896 * 110.99720 * 56.04006 * 7 6 5 34 34 H 1.08995 * 109.47186 * 60.00137 * 8 7 6 35 35 H 1.08998 * 109.47052 * 299.99451 * 8 7 6 36 36 H 0.96697 * 113.99735 * 59.99435 * 11 9 8 37 37 H 1.08997 * 109.47704 * 60.00204 * 12 9 8 38 38 H 1.09000 * 109.47058 * 299.99530 * 12 9 8 39 39 H 1.08996 * 109.47030 * 296.04770 * 14 13 12 40 40 H 1.08999 * 109.46702 * 56.04909 * 14 13 12 41 41 H 1.08996 * 109.46890 * 176.04778 * 14 13 12 42 42 H 1.09004 * 109.47040 * 309.99779 * 15 13 12 43 43 H 1.09000 * 109.47033 * 69.99731 * 15 13 12 44 44 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.61371 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 0.0062 5 6 4.2256 -0.0823 0.0014 6 6 5.7311 -0.1469 0.0024 7 7 6.2143 -0.2880 1.3825 8 6 7.6813 -0.3537 1.4225 9 6 8.1458 -0.4995 2.8730 10 1 7.7307 0.3119 3.4708 11 8 7.6969 -1.7525 3.3933 12 6 9.6738 -0.4427 2.9273 13 7 10.1198 -0.5834 4.3199 14 6 9.6984 0.5697 5.1266 15 6 11.5751 -0.7713 4.3902 16 6 11.9648 -1.1546 5.7946 17 1 11.2073 -1.2488 6.5586 18 6 13.2886 -1.3841 6.1043 19 7 14.2112 -1.2690 5.1740 20 14 13.7717 -1.8599 7.8449 21 1 12.5566 -1.9223 8.6963 22 1 14.4342 -3.1889 7.8289 23 1 14.7084 -0.8464 8.3932 24 7 3.5254 -1.1997 0.0013 25 6 2.2066 -1.1916 0.0004 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6889 2.1423 0.0004 30 1 4.1735 2.0591 0.0110 31 1 6.1344 0.7679 -0.4320 32 1 6.0585 -1.0037 -0.5865 33 1 5.8035 -1.0943 1.8287 34 1 8.0976 0.5599 0.9982 35 1 8.0225 -1.2118 0.8434 36 1 8.0284 -2.5209 2.9089 37 1 10.0163 0.5129 2.5306 38 1 10.0890 -1.2542 2.3296 39 1 10.1856 1.4709 4.7545 40 1 8.6169 0.6861 5.0569 41 1 9.9800 0.4076 6.1670 42 1 11.8730 -1.5622 3.7018 43 1 12.0751 0.1573 4.1150 44 1 15.1424 -1.4300 5.3920 45 1 1.6672 -2.1272 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356586532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:33 Heat of formation + Delta-G solvation = -16.892529 kcal Electronic energy + Delta-G solvation = -22540.094003 eV Core-core repulsion = 19171.186800 eV Total energy + Delta-G solvation = -3368.907203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57589 -38.30198 -36.18429 -35.15921 -33.66516 -32.49952 -32.27241 -30.13937 -28.30994 -27.02156 -25.99165 -24.67458 -23.73974 -22.97737 -21.64298 -21.20107 -20.11525 -17.26482 -16.71903 -16.44840 -16.05306 -15.78684 -15.36208 -15.27923 -14.84764 -14.65508 -14.29111 -14.08591 -13.80171 -13.54768 -13.32714 -13.08542 -12.94582 -12.83284 -12.48195 -12.34349 -11.97980 -11.85159 -11.69297 -11.29916 -11.08590 -10.85963 -10.70623 -10.63060 -10.25427 -10.05821 -9.98091 -9.73392 -9.57758 -9.15573 -9.04767 -8.53791 -8.41513 -7.15717 -6.00482 -4.01171 0.78163 1.00648 3.33181 3.39438 3.40407 3.46417 3.92730 4.21012 4.42056 4.46641 4.46837 4.60843 4.67643 4.71808 4.93880 5.02926 5.16115 5.17729 5.21982 5.28990 5.33533 5.38555 5.40163 5.47920 5.55792 5.61451 5.69337 5.77899 5.87651 5.94385 6.09726 6.24304 6.36245 6.41409 6.45741 6.81279 6.82045 7.25892 7.30193 7.35898 7.73025 7.83554 8.01340 8.13674 8.24151 8.58817 9.07423 9.63042 11.10556 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041455 B = 0.002141 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.265331 B =13076.360573 C =13226.290249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.142 4.142 3 C -0.079 4.079 4 C -0.146 4.146 5 C 0.127 3.873 6 C 0.108 3.892 7 N -0.679 5.679 8 C 0.028 3.972 9 C 0.114 3.886 10 H 0.103 0.897 11 O -0.546 6.546 12 C 0.025 3.975 13 N -0.529 5.529 14 C 0.037 3.963 15 C 0.192 3.808 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.053 3.947 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 N -0.477 5.477 25 C 0.099 3.901 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.353 0.647 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.368 0.632 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.009 0.991 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.028 0.972 43 H -0.011 1.011 44 H 0.260 0.740 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.657 4.600 -14.142 28.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C -0.105 4.105 4 C -0.167 4.167 5 C -0.011 4.011 6 C -0.021 4.021 7 N -0.312 5.312 8 C -0.102 4.102 9 C 0.054 3.946 10 H 0.121 0.879 11 O -0.350 6.350 12 C -0.105 4.105 13 N -0.254 5.254 14 C -0.111 4.111 15 C 0.067 3.933 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.148 4.148 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.212 1.212 24 N -0.186 5.186 25 C -0.058 4.058 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.173 0.827 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.214 0.786 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.007 0.993 44 H 0.070 0.930 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.537 4.423 -13.412 28.311 hybrid contribution 0.879 0.149 -0.287 0.936 sum -23.658 4.572 -13.699 27.718 Atomic orbital electron populations 1.20716 0.90242 1.03034 1.02682 1.20943 0.97597 0.94337 1.01578 1.21497 0.94062 0.98177 0.96764 1.21958 0.94959 0.99154 1.00597 1.21119 0.96170 0.88522 0.95312 1.20785 0.88231 1.01968 0.91136 1.60439 1.06847 1.48715 1.15183 1.22717 0.87697 1.01309 0.98469 1.21978 0.93189 0.87617 0.91827 0.87931 1.86601 1.74116 1.14821 1.59424 1.22698 0.94718 1.00076 0.93002 1.62023 1.17571 1.39254 1.06508 1.22239 0.98159 0.90896 0.99823 1.19757 0.80083 0.95506 0.97961 1.21220 0.92238 1.45653 0.95099 0.91725 1.25006 0.96523 0.95777 0.97501 1.69972 1.00928 1.50312 1.32860 0.86432 0.78458 0.77993 0.84493 1.19608 1.21037 1.21167 1.67470 1.08318 1.31191 1.11590 1.22624 0.89653 0.97499 0.96050 0.90821 0.91398 0.91191 0.84890 0.84618 0.89566 0.93394 0.82730 0.90219 0.94690 0.78608 0.95293 0.91310 0.97265 0.93393 0.90878 0.95408 0.99297 0.93046 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.00 0.36 -0.16 16 2 C -0.14 -1.10 5.90 -104.49 -0.62 -1.72 16 3 C -0.08 -0.62 9.86 -39.28 -0.39 -1.00 16 4 C -0.15 -1.32 9.72 -39.44 -0.38 -1.70 16 5 C 0.13 1.35 6.29 -82.59 -0.52 0.83 16 6 C 0.11 1.10 5.99 -4.98 -0.03 1.07 16 7 N -0.68 -7.92 6.49 -115.06 -0.75 -8.67 16 8 C 0.03 0.33 5.36 -3.83 -0.02 0.31 16 9 C 0.11 1.68 3.08 -26.73 -0.08 1.59 16 10 H 0.10 1.63 6.47 -51.93 -0.34 1.29 16 11 O -0.55 -8.64 12.72 -35.23 -0.45 -9.09 16 12 C 0.02 0.44 4.62 -3.82 -0.02 0.42 16 13 N -0.53 -11.68 4.62 -244.36 -1.13 -12.81 16 14 C 0.04 0.76 9.16 60.06 0.55 1.31 16 15 C 0.19 5.10 4.72 -4.97 -0.02 5.07 16 16 C -0.50 -14.47 8.52 -34.44 -0.29 -14.76 16 17 H 0.06 1.86 7.10 -52.48 -0.37 1.49 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 20 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 N -0.48 -5.44 10.27 -9.47 -0.10 -5.54 16 25 C 0.10 0.91 10.86 -17.55 -0.19 0.72 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 28 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 29 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.09 0.74 8.04 -51.93 -0.42 0.33 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.35 4.53 8.28 -39.29 -0.33 4.21 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.37 4.81 9.04 45.56 0.41 5.22 16 37 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.05 0.86 6.30 -51.93 -0.33 0.53 16 41 H 0.07 1.59 6.86 -51.93 -0.36 1.24 16 42 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 43 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -32.89 371.43 -9.61 -42.49 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.75 Total: 3.98 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.75 Total: -6.60 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -1.24 Total: -53.39 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.45 Total: -9.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.89 -9.61 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356586532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.600 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds