Wall clock time and date at job start Tue Mar 31 2020 07:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38669 * 120.42108 * 2 1 4 4 C 1.38627 * 118.42533 * 179.70701 * 3 2 1 5 5 C 1.38232 * 119.15816 * 0.51312 * 4 3 2 6 6 C 1.50693 * 119.61963 * 179.75192 * 5 4 3 7 7 N 1.46901 * 109.47360 * 94.72888 * 6 5 4 8 8 C 1.46899 * 111.00076 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46798 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47555 * 304.99556 * 9 8 7 11 11 O 1.42901 * 109.47612 * 65.00079 * 9 8 7 12 12 C 1.53000 * 109.47000 * 185.00066 * 9 8 7 13 13 N 1.46905 * 109.47114 * 180.02562 * 12 9 8 14 14 C 1.46900 * 110.99850 * 293.94896 * 13 12 9 15 15 C 1.46906 * 111.00051 * 169.99929 * 13 12 9 16 16 C 1.50699 * 109.47140 * 189.99841 * 15 13 12 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 13 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 13 19 19 N 1.31522 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99980 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46950 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47074 * 119.99839 * 20 18 16 23 23 H 1.48505 * 109.46997 * 239.99833 * 20 18 16 24 24 N 1.31861 * 120.76095 * 359.47801 * 5 4 3 25 25 C 1.31881 * 121.72437 * 0.27405 * 24 5 4 26 26 H 1.09003 * 109.47288 * 270.02253 * 1 2 3 27 27 H 1.08998 * 109.47517 * 30.01978 * 1 2 3 28 28 H 1.09001 * 109.47522 * 150.01833 * 1 2 3 29 29 H 1.08005 * 120.78910 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.42511 * 180.28425 * 4 3 2 31 31 H 1.09005 * 109.47183 * 334.72682 * 6 5 4 32 32 H 1.09001 * 109.47380 * 214.73032 * 6 5 4 33 33 H 1.00896 * 110.99720 * 56.04006 * 7 6 5 34 34 H 1.08995 * 109.47186 * 60.00137 * 8 7 6 35 35 H 1.08998 * 109.47052 * 299.99451 * 8 7 6 36 36 H 0.96697 * 113.99735 * 59.99435 * 11 9 8 37 37 H 1.08997 * 109.47704 * 60.00204 * 12 9 8 38 38 H 1.09000 * 109.47058 * 299.99530 * 12 9 8 39 39 H 1.08996 * 109.47030 * 296.04770 * 14 13 12 40 40 H 1.08999 * 109.46702 * 56.04909 * 14 13 12 41 41 H 1.08996 * 109.46890 * 176.04778 * 14 13 12 42 42 H 1.09004 * 109.47040 * 309.99779 * 15 13 12 43 43 H 1.09000 * 109.47033 * 69.99731 * 15 13 12 44 44 H 0.96992 * 120.00038 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.61371 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 0.0062 5 6 4.2256 -0.0823 0.0014 6 6 5.7311 -0.1469 0.0024 7 7 6.2143 -0.2880 1.3825 8 6 7.6813 -0.3537 1.4225 9 6 8.1458 -0.4995 2.8730 10 1 7.7307 0.3119 3.4708 11 8 7.6969 -1.7525 3.3933 12 6 9.6738 -0.4427 2.9273 13 7 10.1198 -0.5834 4.3199 14 6 9.6984 0.5697 5.1266 15 6 11.5751 -0.7713 4.3902 16 6 11.9648 -1.1546 5.7946 17 1 11.2073 -1.2488 6.5586 18 6 13.2886 -1.3841 6.1043 19 7 14.2112 -1.2690 5.1740 20 14 13.7717 -1.8599 7.8449 21 1 12.5566 -1.9223 8.6963 22 1 14.4342 -3.1889 7.8289 23 1 14.7084 -0.8464 8.3932 24 7 3.5254 -1.1997 0.0013 25 6 2.2066 -1.1916 0.0004 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6889 2.1423 0.0004 30 1 4.1735 2.0591 0.0110 31 1 6.1344 0.7679 -0.4320 32 1 6.0585 -1.0037 -0.5865 33 1 5.8035 -1.0943 1.8287 34 1 8.0976 0.5599 0.9982 35 1 8.0225 -1.2118 0.8434 36 1 8.0284 -2.5209 2.9089 37 1 10.0163 0.5129 2.5306 38 1 10.0890 -1.2542 2.3296 39 1 10.1856 1.4709 4.7545 40 1 8.6169 0.6861 5.0569 41 1 9.9800 0.4076 6.1670 42 1 11.8730 -1.5622 3.7018 43 1 12.0751 0.1573 4.1150 44 1 15.1424 -1.4300 5.3920 45 1 1.6672 -2.1272 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356586532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:32 Heat of formation + Delta-G solvation = -42.805105 kcal Electronic energy + Delta-G solvation = -22541.217657 eV Core-core repulsion = 19171.186800 eV Total energy + Delta-G solvation = -3370.030857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22526 -39.60382 -37.53548 -36.32962 -34.62033 -34.34650 -32.96954 -31.31016 -29.48853 -28.70279 -27.27242 -25.83562 -24.71004 -24.02649 -22.66913 -22.26871 -21.72446 -18.57949 -18.04714 -17.48492 -17.18345 -16.90659 -16.69250 -16.24850 -16.00138 -15.92332 -15.62510 -15.27073 -15.01071 -14.71322 -14.37189 -14.01140 -13.84402 -13.77026 -13.45520 -13.33644 -13.20808 -13.09869 -12.91805 -12.70638 -12.57587 -12.53318 -12.37126 -12.32500 -12.01504 -11.60537 -11.39546 -10.76938 -10.69392 -10.62836 -10.37688 -9.77430 -9.40895 -8.95697 -8.21343 -6.31058 0.13478 0.37528 1.40282 1.40988 1.55116 2.39847 2.67093 3.06994 3.11294 3.34579 3.54955 3.70800 3.77836 3.96221 4.00049 4.08101 4.11369 4.14268 4.25215 4.38144 4.46927 4.55070 4.58919 4.69087 4.69886 4.73818 4.78529 4.80460 4.84370 4.93168 5.06461 5.14895 5.17123 5.21443 5.23794 5.32050 5.38381 5.64789 5.80698 5.93919 6.05163 6.29164 6.32652 6.63585 6.85296 6.94683 7.05692 7.38675 8.89788 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041455 B = 0.002141 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.265331 B =13076.360573 C =13226.290249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.153 4.153 5 C 0.103 3.897 6 C 0.113 3.887 7 N -0.682 5.682 8 C 0.039 3.961 9 C 0.128 3.872 10 H 0.095 0.905 11 O -0.562 6.562 12 C 0.025 3.975 13 N -0.540 5.540 14 C 0.042 3.958 15 C 0.207 3.793 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 N -0.507 5.507 25 C 0.080 3.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.345 0.655 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.379 0.621 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.005 0.995 43 H -0.038 1.038 44 H 0.264 0.736 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.385 5.200 -14.074 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.173 4.173 5 C -0.035 4.035 6 C -0.017 4.017 7 N -0.314 5.314 8 C -0.091 4.091 9 C 0.068 3.932 10 H 0.113 0.887 11 O -0.368 6.368 12 C -0.104 4.104 13 N -0.264 5.264 14 C -0.107 4.107 15 C 0.081 3.919 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 N -0.216 5.216 25 C -0.077 4.077 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.177 0.823 30 H 0.168 0.832 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.163 0.837 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.227 0.773 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.023 0.977 43 H -0.020 1.020 44 H 0.073 0.927 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -26.286 5.029 -13.362 29.913 hybrid contribution 1.328 -0.028 -0.369 1.379 sum -24.958 5.001 -13.731 28.921 Atomic orbital electron populations 1.20776 0.88050 1.04230 1.03385 1.21289 0.99190 0.93808 0.99968 1.21877 0.93809 0.99387 0.95929 1.22182 0.95833 0.99070 1.00231 1.21234 0.96310 0.89125 0.96801 1.20796 0.88437 1.02403 0.90020 1.60436 1.06451 1.48228 1.16292 1.22544 0.88025 1.02268 0.96240 1.21799 0.90682 0.87084 0.93655 0.88725 1.86563 1.74288 1.15634 1.60305 1.22804 0.96849 1.00411 0.90373 1.61928 1.14498 1.40528 1.09489 1.22204 0.99772 0.90267 0.98409 1.19411 0.82814 0.93221 0.96472 1.21504 0.92602 1.46021 0.95975 0.92169 1.25923 0.96432 0.95468 1.01970 1.70086 1.01406 1.50922 1.35094 0.85321 0.78245 0.77879 0.79082 1.18942 1.20299 1.20278 1.67419 1.09535 1.32032 1.12646 1.23007 0.89315 0.98968 0.96427 0.90193 0.90066 0.90204 0.82302 0.83231 0.88046 0.93988 0.83660 0.89031 0.93902 0.77327 0.94610 0.91322 0.97054 0.90649 0.92774 0.97725 1.02031 0.92673 0.81435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.04 71.23 0.71 -0.05 16 2 C -0.14 -1.94 5.90 -19.78 -0.12 -2.06 16 3 C -0.08 -1.15 9.86 22.47 0.22 -0.93 16 4 C -0.15 -2.54 9.72 22.36 0.22 -2.32 16 5 C 0.10 2.12 6.29 42.55 0.27 2.39 16 6 C 0.11 2.18 5.99 85.55 0.51 2.69 16 7 N -0.68 -15.22 6.49 -517.95 -3.36 -18.58 16 8 C 0.04 0.86 5.36 86.30 0.46 1.33 16 9 C 0.13 3.62 3.08 30.59 0.09 3.72 16 10 H 0.09 2.86 6.47 -2.39 -0.02 2.85 16 11 O -0.56 -17.38 12.72 -148.98 -1.90 -19.27 16 12 C 0.02 0.86 4.62 86.30 0.40 1.26 16 13 N -0.54 -24.01 4.62 -927.03 -4.28 -28.29 16 14 C 0.04 1.69 9.16 127.69 1.17 2.86 16 15 C 0.21 11.30 4.72 85.56 0.40 11.70 16 16 C -0.52 -30.50 8.52 25.60 0.22 -30.28 16 17 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 20 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 N -0.51 -11.47 10.27 -183.89 -1.89 -13.35 16 25 C 0.08 1.41 10.86 84.67 0.92 2.33 16 26 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.39 8.10 -2.39 -0.02 0.37 16 28 H 0.08 0.43 8.09 -2.39 -0.02 0.41 16 29 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.10 1.60 8.04 -2.38 -0.02 1.58 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.35 8.68 8.28 -89.70 -0.74 7.94 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.38 9.68 9.04 -74.06 -0.67 9.01 16 37 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 38 H 0.07 2.36 7.93 -2.39 -0.02 2.35 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.07 2.62 6.30 -2.39 -0.02 2.60 16 41 H 0.05 2.37 6.86 -2.39 -0.02 2.35 16 42 H 0.00 0.27 7.93 -2.38 -0.02 0.25 16 43 H -0.04 -2.23 8.12 -2.39 -0.02 -2.25 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -71.02 371.43 -3.60 -74.62 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.43 Total: 21.16 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.95 Total: -6.91 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -9.25 Total: -116.87 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.90 Total: -19.27 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.02 -3.60 -74.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356586532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.818 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds