Wall clock time and date at job start Tue Mar 31 2020 07:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38212 * 120.01063 * 2 1 4 4 C 1.38223 * 120.02844 * 180.02562 * 3 2 1 5 5 C 1.38274 * 120.04766 * 359.96958 * 4 3 2 6 6 C 1.38176 * 120.02138 * 359.79968 * 5 4 3 7 7 C 1.50707 * 120.00966 * 180.22565 * 6 5 4 8 8 N 1.46902 * 109.47076 * 260.23096 * 7 6 5 9 9 C 1.46897 * 110.99764 * 66.04880 * 8 7 6 10 10 C 1.50690 * 109.47250 * 63.50077 * 9 8 7 11 11 H 1.07998 * 120.00428 * 4.51975 * 10 9 8 12 12 C 1.37885 * 120.00022 * 184.51981 * 10 9 8 13 13 N 1.31513 * 120.00029 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00051 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47440 * 89.99631 * 14 12 10 16 16 H 1.48505 * 109.46966 * 210.00169 * 14 12 10 17 17 H 1.48503 * 109.47120 * 329.99597 * 14 12 10 18 18 C 1.46900 * 110.99630 * 189.99961 * 8 7 6 19 19 C 1.53007 * 109.46554 * 163.96194 * 18 8 7 20 20 C 1.53006 * 109.46595 * 178.04982 * 19 18 8 21 21 C 1.52995 * 109.47084 * 65.00500 * 20 19 18 22 22 C 1.53003 * 109.46637 * 185.00010 * 20 19 18 23 23 C 1.38439 * 120.01040 * 180.02562 * 2 1 3 24 24 F 1.35098 * 120.02837 * 359.95725 * 23 2 1 25 25 H 1.08996 * 109.46880 * 269.98028 * 1 2 3 26 26 H 1.08998 * 109.47107 * 29.97952 * 1 2 3 27 27 H 1.08999 * 109.47186 * 149.98020 * 1 2 3 28 28 H 1.08004 * 119.99081 * 0.03890 * 3 2 1 29 29 H 1.08000 * 119.98146 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.98898 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.47033 * 20.23567 * 7 6 5 32 32 H 1.08997 * 109.46923 * 140.23268 * 7 6 5 33 33 H 1.09005 * 109.46627 * 183.50297 * 9 8 7 34 34 H 1.09003 * 109.46810 * 303.49759 * 9 8 7 35 35 H 0.96994 * 119.99970 * 179.97438 * 13 12 10 36 36 H 1.08991 * 109.47470 * 283.95997 * 18 8 7 37 37 H 1.09002 * 109.47378 * 43.96834 * 18 8 7 38 38 H 1.09000 * 109.47368 * 298.05184 * 19 18 8 39 39 H 1.08996 * 109.47058 * 58.05539 * 19 18 8 40 40 H 1.08990 * 109.47355 * 305.00414 * 20 19 18 41 41 H 1.09004 * 109.47303 * 59.99534 * 21 20 19 42 42 H 1.08998 * 109.47226 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47279 * 299.99890 * 21 20 19 44 44 H 1.08999 * 109.46908 * 60.00333 * 22 20 19 45 45 H 1.08998 * 109.46879 * 180.02562 * 22 20 19 46 46 H 1.08996 * 109.47274 * 300.00580 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.2733 0.0006 -0.0004 6 6 3.5843 -1.1971 0.0044 7 6 4.3396 -2.5013 0.0096 8 7 4.3816 -3.0482 -1.3531 9 6 5.1752 -2.1884 -2.2412 10 6 6.6047 -2.1580 -1.7654 11 1 6.9109 -2.7776 -0.9354 12 6 7.5219 -1.3393 -2.3896 13 7 7.1492 -0.5852 -3.4005 14 14 9.2940 -1.3022 -1.8002 15 1 10.0811 -2.3260 -2.5332 16 1 9.8721 0.0420 -2.0540 17 1 9.3378 -1.5929 -0.3445 18 6 4.8979 -4.4235 -1.3526 19 6 4.5618 -5.0949 -2.6858 20 6 5.1416 -6.5107 -2.7042 21 6 4.4478 -7.3598 -1.6372 22 6 4.9143 -7.1369 -4.0816 23 6 2.1995 -1.1988 -0.0005 24 9 1.5248 -2.3692 -0.0002 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6584 2.1322 0.0006 29 1 4.1200 2.1329 -0.0001 30 1 5.3533 0.0020 -0.0004 31 1 5.3560 -2.3310 0.3644 32 1 3.8381 -3.2088 0.6698 33 1 5.1385 -2.5828 -3.2567 34 1 4.7666 -1.1779 -2.2289 35 1 7.7943 -0.0090 -3.8394 36 1 5.9792 -4.4057 -1.2172 37 1 4.4389 -4.9837 -0.5379 38 1 3.4794 -5.1439 -2.8053 39 1 4.9917 -4.5156 -3.5028 40 1 6.2106 -6.4683 -2.4962 41 1 3.3786 -7.4023 -1.8452 42 1 4.8605 -8.3686 -1.6506 43 1 4.6096 -6.9137 -0.6560 44 1 5.4086 -6.5319 -4.8417 45 1 5.3270 -8.1456 -4.0946 46 1 3.8452 -7.1792 -4.2895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474339220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:38 Heat of formation + Delta-G solvation = -45.338983 kcal Electronic energy + Delta-G solvation = -24364.588939 eV Core-core repulsion = 20974.528244 eV Total energy + Delta-G solvation = -3390.060695 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.32142 -38.88945 -37.34569 -35.41511 -32.77914 -32.28455 -30.67919 -28.40682 -27.04577 -26.84035 -26.62884 -24.52785 -23.18165 -21.52633 -20.85534 -19.61073 -19.34221 -16.94197 -16.38290 -16.06403 -15.40605 -15.14499 -14.80803 -14.67317 -14.43298 -13.81439 -13.71958 -13.26116 -13.16560 -13.07009 -12.82601 -12.69350 -12.46082 -12.27326 -12.05328 -11.88673 -11.50401 -11.42505 -11.22139 -11.09183 -10.97364 -10.75800 -10.68050 -10.56383 -10.31264 -10.25175 -10.00593 -9.91953 -9.75392 -9.52624 -8.43207 -8.26481 -8.09747 -7.12531 -6.02479 -4.11428 1.66741 1.67464 3.24497 3.32304 3.34036 4.01963 4.38458 4.76091 4.98622 5.03653 5.16226 5.26568 5.27611 5.33068 5.37869 5.49909 5.58487 5.69856 5.79093 5.82191 5.84609 5.92577 5.97504 6.02018 6.05838 6.12254 6.17927 6.24941 6.33565 6.34868 6.46028 6.47215 6.60885 6.63460 6.65446 6.69665 6.86827 6.93392 7.01336 7.02713 7.30627 7.42075 7.56473 7.92222 8.09506 8.28639 8.34390 8.99386 9.54348 11.01796 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.006602 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.974121 B = 4240.297465 C = 6532.262324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C -0.103 4.103 4 C -0.132 4.132 5 C -0.069 4.069 6 C -0.088 4.088 7 C 0.100 3.900 8 N -0.537 5.537 9 C 0.184 3.816 10 C -0.545 4.545 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.882 3.118 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.061 3.939 19 C -0.103 4.103 20 C -0.097 4.097 21 C -0.145 4.145 22 C -0.144 4.144 23 C 0.111 3.889 24 F -0.137 7.137 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -2.861 5.812 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C -0.122 4.122 4 C -0.150 4.150 5 C -0.087 4.087 6 C -0.089 4.089 7 C -0.028 4.028 8 N -0.260 5.260 9 C 0.059 3.941 10 C -0.584 4.584 11 H 0.074 0.926 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.710 3.290 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.067 4.067 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.202 4.202 22 C -0.201 4.201 23 C 0.091 3.909 24 F -0.116 7.116 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.238 -2.797 5.493 11.105 hybrid contribution 1.937 0.011 0.397 1.978 sum -7.300 -2.786 5.890 9.785 Atomic orbital electron populations 1.20633 0.90903 1.02830 1.02003 1.19786 0.96404 0.92170 1.05395 1.20754 0.94169 0.96454 1.00792 1.21122 0.93982 0.98290 1.01654 1.21144 1.00995 0.90788 0.95808 1.19911 0.91433 0.96886 1.00718 1.20780 0.98194 0.91515 0.92346 1.62545 1.53804 1.02312 1.07331 1.19802 0.89864 0.92626 0.91833 1.21689 0.95621 1.24412 1.16722 0.92625 1.24914 0.98309 0.95368 0.94908 1.69946 1.34585 1.26123 1.21888 0.86758 0.85730 0.77384 0.79132 1.20691 1.21190 1.20010 1.21983 0.98774 0.89474 0.96480 1.21521 1.00260 0.93634 0.98658 1.21098 1.00225 0.95510 0.94735 1.21863 1.00289 0.98861 0.99178 1.21810 1.01302 0.99851 0.97147 1.17334 0.89527 0.80609 1.03387 1.91431 1.80105 1.46241 1.93787 0.91555 0.91518 0.91506 0.85991 0.85971 0.84516 0.92636 0.92135 0.95383 0.94497 0.92891 0.93550 0.93252 0.92438 0.91351 0.91431 0.93006 0.93592 0.92582 0.92693 0.93419 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.84 36.01 0.35 -0.96 16 2 C -0.14 -2.13 5.89 -104.55 -0.62 -2.74 16 3 C -0.10 -1.51 9.70 -39.60 -0.38 -1.90 16 4 C -0.13 -2.11 10.05 -39.57 -0.40 -2.51 16 5 C -0.07 -1.28 8.61 -39.59 -0.34 -1.62 16 6 C -0.09 -1.69 4.59 -104.55 -0.48 -2.17 16 7 C 0.10 1.98 4.64 -4.97 -0.02 1.95 16 8 N -0.54 -11.51 4.66 -237.52 -1.11 -12.62 16 9 C 0.18 4.62 4.73 -4.98 -0.02 4.60 16 10 C -0.55 -14.28 7.34 -34.44 -0.25 -14.53 16 11 H 0.06 1.45 5.95 -52.49 -0.31 1.14 16 12 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 14 Si 0.88 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.06 1.18 4.51 -3.82 -0.02 1.16 16 19 C -0.10 -1.83 4.76 -26.72 -0.13 -1.96 16 20 C -0.10 -1.44 2.92 -90.62 -0.26 -1.70 16 21 C -0.14 -1.88 8.95 37.16 0.33 -1.55 16 22 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 23 C 0.11 2.01 7.19 -39.42 -0.28 1.72 16 24 F -0.14 -2.52 15.88 2.25 0.04 -2.48 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.07 0.84 7.64 -51.93 -0.40 0.45 16 28 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.14 2.72 8.04 -52.49 -0.42 2.29 16 31 H 0.06 1.16 6.49 -51.93 -0.34 0.83 16 32 H 0.06 1.11 7.66 -51.93 -0.40 0.71 16 33 H 0.03 0.77 6.66 -51.93 -0.35 0.42 16 34 H 0.04 1.01 6.43 -51.93 -0.33 0.67 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.05 0.98 6.11 -51.93 -0.32 0.67 16 37 H 0.05 0.87 6.32 -51.93 -0.33 0.54 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.38 6.69 -51.93 -0.35 1.04 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.74 6.61 -51.93 -0.34 0.40 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -28.17 365.28 -9.79 -37.96 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.66 Total: 2.42 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -2.28 Total: -22.03 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.37 Total: -37.18 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.17 -9.79 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474339220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.377 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds