Wall clock time and date at job start Tue Mar 31 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38212 * 120.01063 * 2 1 4 4 C 1.38223 * 120.02844 * 180.02562 * 3 2 1 5 5 C 1.38274 * 120.04766 * 359.96958 * 4 3 2 6 6 C 1.38176 * 120.02138 * 359.79968 * 5 4 3 7 7 C 1.50707 * 120.00966 * 180.22565 * 6 5 4 8 8 N 1.46902 * 109.47076 * 260.23096 * 7 6 5 9 9 C 1.46897 * 110.99764 * 66.04880 * 8 7 6 10 10 C 1.50690 * 109.47250 * 63.50077 * 9 8 7 11 11 H 1.07998 * 120.00428 * 4.51975 * 10 9 8 12 12 C 1.37885 * 120.00022 * 184.51981 * 10 9 8 13 13 N 1.31513 * 120.00029 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00051 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47440 * 89.99631 * 14 12 10 16 16 H 1.48505 * 109.46966 * 210.00169 * 14 12 10 17 17 H 1.48503 * 109.47120 * 329.99597 * 14 12 10 18 18 C 1.46900 * 110.99630 * 189.99961 * 8 7 6 19 19 C 1.53007 * 109.46554 * 163.96194 * 18 8 7 20 20 C 1.53006 * 109.46595 * 178.04982 * 19 18 8 21 21 C 1.52995 * 109.47084 * 65.00500 * 20 19 18 22 22 C 1.53003 * 109.46637 * 185.00010 * 20 19 18 23 23 C 1.38439 * 120.01040 * 180.02562 * 2 1 3 24 24 F 1.35098 * 120.02837 * 359.95725 * 23 2 1 25 25 H 1.08996 * 109.46880 * 269.98028 * 1 2 3 26 26 H 1.08998 * 109.47107 * 29.97952 * 1 2 3 27 27 H 1.08999 * 109.47186 * 149.98020 * 1 2 3 28 28 H 1.08004 * 119.99081 * 0.03890 * 3 2 1 29 29 H 1.08000 * 119.98146 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.98898 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.47033 * 20.23567 * 7 6 5 32 32 H 1.08997 * 109.46923 * 140.23268 * 7 6 5 33 33 H 1.09005 * 109.46627 * 183.50297 * 9 8 7 34 34 H 1.09003 * 109.46810 * 303.49759 * 9 8 7 35 35 H 0.96994 * 119.99970 * 179.97438 * 13 12 10 36 36 H 1.08991 * 109.47470 * 283.95997 * 18 8 7 37 37 H 1.09002 * 109.47378 * 43.96834 * 18 8 7 38 38 H 1.09000 * 109.47368 * 298.05184 * 19 18 8 39 39 H 1.08996 * 109.47058 * 58.05539 * 19 18 8 40 40 H 1.08990 * 109.47355 * 305.00414 * 20 19 18 41 41 H 1.09004 * 109.47303 * 59.99534 * 21 20 19 42 42 H 1.08998 * 109.47226 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47279 * 299.99890 * 21 20 19 44 44 H 1.08999 * 109.46908 * 60.00333 * 22 20 19 45 45 H 1.08998 * 109.46879 * 180.02562 * 22 20 19 46 46 H 1.08996 * 109.47274 * 300.00580 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.2733 0.0006 -0.0004 6 6 3.5843 -1.1971 0.0044 7 6 4.3396 -2.5013 0.0096 8 7 4.3816 -3.0482 -1.3531 9 6 5.1752 -2.1884 -2.2412 10 6 6.6047 -2.1580 -1.7654 11 1 6.9109 -2.7776 -0.9354 12 6 7.5219 -1.3393 -2.3896 13 7 7.1492 -0.5852 -3.4005 14 14 9.2940 -1.3022 -1.8002 15 1 10.0811 -2.3260 -2.5332 16 1 9.8721 0.0420 -2.0540 17 1 9.3378 -1.5929 -0.3445 18 6 4.8979 -4.4235 -1.3526 19 6 4.5618 -5.0949 -2.6858 20 6 5.1416 -6.5107 -2.7042 21 6 4.4478 -7.3598 -1.6372 22 6 4.9143 -7.1369 -4.0816 23 6 2.1995 -1.1988 -0.0005 24 9 1.5248 -2.3692 -0.0002 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6584 2.1322 0.0006 29 1 4.1200 2.1329 -0.0001 30 1 5.3533 0.0020 -0.0004 31 1 5.3560 -2.3310 0.3644 32 1 3.8381 -3.2088 0.6698 33 1 5.1385 -2.5828 -3.2567 34 1 4.7666 -1.1779 -2.2289 35 1 7.7943 -0.0090 -3.8394 36 1 5.9792 -4.4057 -1.2172 37 1 4.4389 -4.9837 -0.5379 38 1 3.4794 -5.1439 -2.8053 39 1 4.9917 -4.5156 -3.5028 40 1 6.2106 -6.4683 -2.4962 41 1 3.3786 -7.4023 -1.8452 42 1 4.8605 -8.3686 -1.6506 43 1 4.6096 -6.9137 -0.6560 44 1 5.4086 -6.5319 -4.8417 45 1 5.3270 -8.1456 -4.0946 46 1 3.8452 -7.1792 -4.2895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474339220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:37 Heat of formation + Delta-G solvation = -58.971965 kcal Electronic energy + Delta-G solvation = -24365.180110 eV Core-core repulsion = 20974.528244 eV Total energy + Delta-G solvation = -3390.651866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.71844 -40.28688 -38.87436 -36.80863 -34.63079 -33.76895 -32.02768 -29.99388 -28.81143 -27.96636 -27.78646 -26.22251 -24.92679 -22.86190 -22.21372 -21.24591 -20.74185 -18.46355 -18.27326 -17.46708 -16.95528 -16.73582 -16.28659 -16.16570 -15.91809 -15.44031 -15.11100 -14.58872 -14.51950 -14.32837 -14.17755 -14.11491 -13.89136 -13.66119 -13.28879 -13.12920 -13.01647 -12.86263 -12.71475 -12.65962 -12.57914 -12.24534 -12.15105 -12.13340 -11.94241 -11.76358 -11.70859 -11.43611 -11.30350 -11.20891 -10.55913 -9.60920 -9.42428 -8.97120 -8.11066 -6.29048 0.32991 0.36086 1.34878 1.36644 1.45506 2.37530 2.68268 3.13470 3.42619 3.46621 3.82672 3.87606 4.04480 4.05463 4.13319 4.18209 4.39937 4.42024 4.48587 4.52347 4.67582 4.75086 4.79163 4.82149 4.82634 4.84337 4.91973 4.96415 5.02461 5.09601 5.18359 5.21756 5.24939 5.31425 5.32491 5.35710 5.42014 5.43484 5.52074 5.54183 5.57985 5.64684 5.80270 6.09844 6.10315 6.29552 6.55113 6.90736 7.40603 8.90927 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.006602 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.974121 B = 4240.297465 C = 6532.262324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.133 4.133 3 C -0.094 4.094 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.110 4.110 7 C 0.104 3.896 8 N -0.539 5.539 9 C 0.207 3.793 10 C -0.545 4.545 11 H 0.053 0.947 12 C 0.020 3.980 13 N -0.921 5.921 14 Si 0.946 3.054 15 H -0.278 1.278 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.063 3.937 19 C -0.095 4.095 20 C -0.094 4.094 21 C -0.139 4.139 22 C -0.141 4.141 23 C 0.090 3.910 24 F -0.143 7.143 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.112 0.888 31 H 0.037 0.963 32 H 0.075 0.925 33 H -0.003 1.003 34 H 0.011 0.989 35 H 0.263 0.737 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 -2.863 6.821 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.023 4.023 8 N -0.262 5.262 9 C 0.081 3.919 10 C -0.584 4.584 11 H 0.072 0.928 12 C -0.180 4.180 13 N -0.561 5.561 14 Si 0.772 3.228 15 H -0.204 1.204 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.064 4.064 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.197 4.197 22 C -0.198 4.198 23 C 0.071 3.929 24 F -0.122 7.122 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.162 0.838 30 H 0.130 0.870 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.015 0.985 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.393 -2.815 6.516 12.585 hybrid contribution 2.220 0.041 0.101 2.223 sum -8.172 -2.774 6.617 10.875 Atomic orbital electron populations 1.20728 0.88187 1.03745 1.03536 1.20257 0.98417 0.91375 1.03321 1.21204 0.93547 0.97800 0.98653 1.21416 0.95058 0.98000 1.00475 1.21053 1.00002 0.92112 0.98008 1.19893 0.92304 0.96470 1.02491 1.20747 0.97607 0.92687 0.91308 1.62500 1.52918 1.02794 1.07974 1.19338 0.89882 0.91648 0.91037 1.21837 0.96240 1.23996 1.16306 0.92842 1.25654 1.02314 0.95041 0.94989 1.70067 1.35960 1.26965 1.23106 0.85744 0.80782 0.77445 0.78864 1.20372 1.20687 1.19282 1.22041 0.97509 0.88684 0.98199 1.21447 1.00242 0.95132 0.96454 1.21073 0.99580 0.93955 0.96742 1.21812 1.00537 0.99396 0.97907 1.21781 1.01878 1.00585 0.95543 1.17543 0.89216 0.81479 1.04709 1.91405 1.80029 1.46731 1.93997 0.89579 0.89033 0.92189 0.81843 0.83816 0.87035 0.94451 0.90680 0.98498 0.97047 0.92817 0.95690 0.90984 0.92192 0.94726 0.92482 0.92348 0.91529 0.93026 0.93942 0.91256 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.84 71.24 0.70 -1.55 16 2 C -0.13 -3.87 5.89 -19.82 -0.12 -3.99 16 3 C -0.09 -2.50 9.70 22.26 0.22 -2.28 16 4 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 5 C -0.09 -3.58 8.61 22.26 0.19 -3.39 16 6 C -0.11 -4.35 4.59 -19.82 -0.09 -4.44 16 7 C 0.10 4.30 4.64 85.56 0.40 4.69 16 8 N -0.54 -24.09 4.66 -905.37 -4.22 -28.31 16 9 C 0.21 10.99 4.73 85.55 0.40 11.40 16 10 C -0.54 -29.73 7.34 25.60 0.19 -29.54 16 11 H 0.05 2.90 5.95 -2.91 -0.02 2.88 16 12 C 0.02 1.09 5.46 84.66 0.46 1.55 16 13 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 14 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.06 2.52 4.51 86.31 0.39 2.91 16 19 C -0.09 -3.47 4.76 30.60 0.15 -3.33 16 20 C -0.09 -2.77 2.92 -10.79 -0.03 -2.80 16 21 C -0.14 -3.37 8.95 71.98 0.64 -2.72 16 22 C -0.14 -3.59 9.19 71.98 0.66 -2.92 16 23 C 0.09 3.23 7.19 22.38 0.16 3.39 16 24 F -0.14 -5.21 15.88 44.97 0.71 -4.49 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 27 H 0.06 1.38 7.64 -2.39 -0.02 1.36 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 30 H 0.11 4.75 8.04 -2.91 -0.02 4.73 16 31 H 0.04 1.65 6.49 -2.39 -0.02 1.63 16 32 H 0.07 2.81 7.66 -2.39 -0.02 2.79 16 33 H 0.00 -0.18 6.66 -2.38 -0.02 -0.19 16 34 H 0.01 0.66 6.43 -2.39 -0.02 0.64 16 35 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.02 1.10 6.11 -2.39 -0.01 1.08 16 37 H 0.07 2.53 6.32 -2.39 -0.02 2.51 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.03 1.48 6.69 -2.39 -0.02 1.46 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.28 6.61 -2.39 -0.02 1.27 16 44 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.18 365.28 4.30 -58.88 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.94 Total: 19.12 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 4.55 Total: -36.86 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.93 Total: -82.25 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.71 Total: -4.49 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -63.18 4.30 -58.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474339220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.087 kcal (2) G-P(sol) polarization free energy of solvation -63.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds