Wall clock time and date at job start Tue Mar 31 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.30999 * 120.00002 * 125.00219 * 11 10 9 13 13 C 1.50703 * 120.00002 * 180.02562 * 12 11 10 14 14 N 1.46503 * 109.47120 * 124.99517 * 13 12 11 15 15 C 1.34773 * 119.99928 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99971 * 180.02562 * 15 14 13 18 18 C 1.54992 * 113.20146 * 61.44970 * 17 15 14 19 19 C 1.54057 * 104.76010 * 146.47429 * 18 17 15 20 20 N 1.48241 * 106.70315 * 1.01210 * 19 18 17 21 21 C 1.48808 * 105.17230 * 332.51617 * 20 19 18 22 22 C 1.47673 * 108.91441 * 88.16762 * 20 19 18 23 23 C 1.52995 * 109.28229 * 312.92054 * 22 20 19 24 24 C 1.54011 * 113.03231 * 299.51783 * 17 15 14 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 1.07996 * 119.99901 * 304.99623 * 11 10 9 30 30 H 1.07996 * 120.00097 * 359.97438 * 12 11 10 31 31 H 1.08997 * 109.47209 * 244.99700 * 13 12 11 32 32 H 1.09002 * 109.46637 * 4.99745 * 13 12 11 33 33 H 0.97003 * 119.99849 * 0.02562 * 14 13 12 34 34 H 1.08993 * 110.38261 * 265.29737 * 18 17 15 35 35 H 1.09004 * 110.38028 * 27.54678 * 18 17 15 36 36 H 1.09003 * 110.01330 * 120.32074 * 19 18 17 37 37 H 1.08995 * 110.01811 * 241.65442 * 19 18 17 38 38 H 1.08998 * 110.93323 * 284.56226 * 21 20 19 39 39 H 1.09000 * 110.93268 * 160.89114 * 21 20 19 40 40 H 1.09006 * 109.50143 * 72.86328 * 22 20 19 41 41 H 1.08996 * 109.50363 * 192.97628 * 22 20 19 42 42 H 1.09002 * 109.36692 * 64.97727 * 23 22 20 43 43 H 1.09003 * 109.36628 * 184.71564 * 23 22 20 44 44 H 1.09004 * 109.63217 * 291.84109 * 24 17 15 45 45 H 1.09000 * 109.62838 * 52.42744 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0789 -4.8022 -0.0022 12 6 1.1483 -5.7227 -0.9317 13 6 0.1687 -6.8679 -0.9327 14 7 -0.5069 -6.9315 -2.2311 15 6 -1.4324 -7.8833 -2.4632 16 8 -1.7057 -8.6874 -1.5974 17 6 -2.1270 -7.9491 -3.7990 18 6 -1.1560 -8.2027 -4.9802 19 6 -1.9663 -9.0503 -5.9794 20 7 -3.3149 -9.2295 -5.3906 21 6 -3.1120 -9.1437 -3.9189 22 6 -4.1709 -8.0986 -5.8020 23 6 -3.4110 -6.7874 -5.5924 24 6 -2.9175 -6.6697 -4.1309 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.3200 -4.8642 0.7636 30 1 1.9070 -5.6605 -1.6978 31 1 0.7014 -7.8019 -0.7541 32 1 -0.5700 -6.7147 -0.1459 33 1 -0.2880 -6.2886 -2.9237 34 1 -0.8589 -7.2586 -5.4368 35 1 -0.2781 -8.7513 -4.6389 36 1 -2.0423 -8.5302 -6.9343 37 1 -1.4882 -10.0197 -6.1200 38 1 -2.6627 -10.0590 -3.5338 39 1 -4.0504 -8.9273 -3.4084 40 1 -4.4315 -8.2038 -6.8552 41 1 -5.0798 -8.0926 -5.2005 42 1 -2.5495 -6.7583 -6.2595 43 1 -4.0697 -5.9482 -5.8159 44 1 -3.7698 -6.5808 -3.4572 45 1 -2.2691 -5.8003 -4.0225 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497734560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:30 Heat of formation + Delta-G solvation = -1.975796 kcal Electronic energy + Delta-G solvation = -23330.997923 eV Core-core repulsion = 19962.737558 eV Total energy + Delta-G solvation = -3368.260365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53952 -39.08717 -36.30828 -34.76103 -33.18054 -32.42224 -32.25574 -30.53218 -29.56745 -27.29855 -25.08305 -24.39021 -23.23496 -22.11417 -21.71761 -20.57964 -19.92218 -19.10282 -17.44499 -17.13300 -16.58495 -16.13670 -15.54476 -15.16436 -14.81556 -14.46439 -14.26979 -13.93842 -13.69789 -13.31792 -13.29791 -13.18958 -13.04736 -12.94998 -12.71690 -12.07236 -12.01642 -11.95342 -11.80255 -11.39335 -11.12473 -11.07160 -11.05570 -10.84174 -10.83628 -10.66959 -10.14796 -9.92111 -9.83004 -9.29695 -9.02820 -8.88084 -8.74660 -6.99255 -5.81759 -3.11644 2.22688 2.47776 3.25033 3.40666 3.45009 3.46229 3.62506 4.13377 4.27400 4.39774 4.55755 4.63228 4.66572 4.71251 4.77414 4.94743 5.04184 5.10404 5.17872 5.21638 5.27984 5.40323 5.50379 5.51054 5.52230 5.57673 5.63349 5.68672 5.71004 5.76289 5.81553 5.87012 5.95685 6.09138 6.29355 6.40673 6.42850 6.52933 6.58408 6.85654 7.09981 7.41257 7.63824 8.10431 8.36474 9.47733 10.03689 10.39054 11.40850 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002722 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.549092 B =10285.178799 C =11084.978986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.105 4.105 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.720 5.720 15 C 0.536 3.464 16 O -0.540 6.540 17 C -0.120 4.120 18 C -0.137 4.137 19 C 0.031 3.969 20 N -0.496 5.496 21 C 0.058 3.942 22 C 0.032 3.968 23 C -0.155 4.155 24 C -0.107 4.107 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -18.445 -12.760 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.125 4.125 12 C -0.222 4.222 13 C 0.032 3.968 14 N -0.371 5.371 15 C 0.322 3.678 16 O -0.417 6.417 17 C -0.125 4.125 18 C -0.176 4.176 19 C -0.098 4.098 20 N -0.216 5.216 21 C -0.070 4.070 22 C -0.097 4.097 23 C -0.194 4.194 24 C -0.145 4.145 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.822 -19.451 -12.328 23.754 hybrid contribution 0.742 2.245 0.000 2.364 sum -5.080 -17.206 -12.328 21.768 Atomic orbital electron populations 1.69653 1.05150 1.25895 1.57422 1.24763 0.95558 0.97768 1.02792 0.86235 0.78514 0.83333 0.77903 1.21210 1.21613 1.21166 1.19198 0.91050 0.84021 1.43201 0.91121 1.42288 1.05931 0.99551 1.89626 1.19828 0.92609 0.84578 0.98446 1.23342 0.98225 0.93962 0.96963 1.22683 1.01002 0.97068 1.01424 1.20331 0.93900 0.97630 0.84937 1.46062 1.40935 1.33052 1.17007 1.19943 0.79113 0.80505 0.88285 1.90699 1.64149 1.40515 1.46373 1.22655 0.97199 0.99605 0.92992 1.22953 0.98392 1.01351 0.94907 1.23072 0.89104 0.99999 0.97605 1.66439 1.10012 1.39248 1.05904 1.23363 0.98192 0.96651 0.88844 1.22623 0.96730 0.88548 1.01810 1.22520 1.01201 0.99240 0.96435 1.22109 0.99903 0.95515 0.96932 0.93375 0.78146 0.95684 0.95121 0.87266 0.86791 0.91097 0.91192 0.76305 0.90215 0.90831 0.90594 0.89947 0.88965 0.89739 0.90202 0.90457 0.90995 0.90857 0.90937 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.47 5.59 -61.08 -0.34 -18.81 16 10 C 0.17 3.42 6.70 -5.19 -0.03 3.38 16 11 C -0.11 -1.69 9.24 -36.02 -0.33 -2.02 16 12 C -0.20 -2.70 9.24 -36.02 -0.33 -3.04 16 13 C 0.15 1.94 6.11 -5.19 -0.03 1.91 16 14 N -0.72 -8.26 5.52 -61.47 -0.34 -8.60 16 15 C 0.54 6.67 6.78 -10.98 -0.07 6.59 16 16 O -0.54 -8.64 16.17 5.56 0.09 -8.55 16 17 C -0.12 -1.14 0.94 -152.87 -0.14 -1.29 16 18 C -0.14 -1.07 5.49 -25.13 -0.14 -1.20 16 19 C 0.03 0.23 6.20 -2.53 -0.02 0.21 16 20 N -0.50 -4.33 6.07 -228.99 -1.39 -5.72 16 21 C 0.06 0.58 5.45 -1.55 -0.01 0.57 16 22 C 0.03 0.23 5.86 -3.40 -0.02 0.21 16 23 C -0.16 -1.10 5.53 -25.84 -0.14 -1.25 16 24 C -0.11 -0.93 5.13 -25.31 -0.13 -1.06 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.38 10.25 7.66 -40.82 -0.31 9.94 16 27 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.73 7.84 -52.49 -0.41 1.32 16 30 H 0.11 1.44 7.84 -52.49 -0.41 1.02 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 33 H 0.40 4.00 8.15 -40.82 -0.33 3.67 16 34 H 0.08 0.54 6.92 -51.93 -0.36 0.18 16 35 H 0.07 0.60 8.00 -51.93 -0.42 0.18 16 36 H 0.08 0.48 6.94 -51.93 -0.36 0.12 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 39 H 0.08 0.85 7.74 -51.93 -0.40 0.45 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.56 7.87 -51.93 -0.41 0.16 16 42 H 0.07 0.48 5.37 -51.93 -0.28 0.20 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 45 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -31.95 356.10 -9.97 -41.92 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.40 Total: 8.98 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.65 Total: -4.39 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -1.35 Total: -60.49 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.95 -9.97 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497734560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.942 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds