Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20766 * 119.99694 * 2 1 4 4 C 1.50698 * 120.00330 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47532 * 175.17662 * 4 2 1 6 6 C 1.50704 * 112.84653 * 305.67843 * 5 4 2 7 7 O 1.21283 * 120.00211 * 110.09026 * 6 5 4 8 8 N 1.34777 * 119.99710 * 290.08623 * 6 5 4 9 9 C 1.46917 * 120.63208 * 4.42816 * 8 6 5 10 10 C 1.52763 * 109.00771 * 233.57841 * 9 8 6 11 11 C 1.53032 * 109.38676 * 305.58694 * 10 9 8 12 12 C 1.53043 * 109.53548 * 61.23592 * 11 10 9 13 13 H 1.09004 * 109.49704 * 58.59242 * 12 11 10 14 14 C 1.50711 * 109.49908 * 178.68291 * 12 11 10 15 15 H 1.07998 * 119.99443 * 119.83931 * 14 12 11 16 16 C 1.37878 * 119.99858 * 299.84340 * 14 12 11 17 17 N 1.31512 * 120.00335 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99791 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.47005 * 89.99748 * 18 16 14 20 20 H 1.48499 * 109.47249 * 209.99832 * 18 16 14 21 21 H 1.48500 * 109.47442 * 330.00113 * 18 16 14 22 22 C 1.46927 * 120.62730 * 184.70017 * 8 6 5 23 23 C 1.53779 * 113.61783 * 174.48101 * 5 4 2 24 24 C 1.53786 * 87.07762 * 219.93426 * 23 5 4 25 25 C 1.53776 * 87.17578 * 25.38935 * 24 23 5 26 26 H 1.09004 * 109.47357 * 274.30012 * 1 2 3 27 27 H 1.08994 * 109.47246 * 34.30899 * 1 2 3 28 28 H 1.09003 * 109.46876 * 154.30809 * 1 2 3 29 29 H 1.09004 * 109.46978 * 55.18234 * 4 2 1 30 30 H 1.08998 * 109.47741 * 295.18224 * 4 2 1 31 31 H 1.09001 * 109.58910 * 353.41072 * 9 8 6 32 32 H 1.08998 * 109.59265 * 113.84056 * 9 8 6 33 33 H 1.09005 * 109.56330 * 185.54968 * 10 9 8 34 34 H 1.09001 * 109.35981 * 65.50338 * 10 9 8 35 35 H 1.08999 * 109.46362 * 301.22428 * 11 10 9 36 36 H 1.09003 * 109.46428 * 181.25644 * 11 10 9 37 37 H 0.96996 * 120.00335 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.58812 * 246.15760 * 22 8 6 39 39 H 1.08999 * 109.59038 * 6.44383 * 22 8 6 40 40 H 1.08993 * 113.61591 * 105.38804 * 23 5 4 41 41 H 1.08998 * 113.61131 * 334.47804 * 23 5 4 42 42 H 1.09001 * 113.61077 * 139.97883 * 24 23 5 43 43 H 1.09001 * 113.61476 * 270.79320 * 24 23 5 44 44 H 1.09000 * 113.61901 * 89.15391 * 25 24 23 45 45 H 1.08998 * 113.61678 * 220.06037 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7603 -1.0281 -0.1208 6 6 4.1029 -0.1742 -1.3144 7 8 4.4847 0.9658 -1.1550 8 7 3.9852 -0.6776 -2.5591 9 6 3.4330 -2.0221 -2.7737 10 6 4.4176 -2.8365 -3.6110 11 6 4.7393 -2.0759 -4.8993 12 6 5.3908 -0.7350 -4.5529 13 1 6.2981 -0.9100 -3.9747 14 6 5.7367 -0.0008 -5.8228 15 1 5.3027 0.9679 -6.0217 16 6 6.6072 -0.5659 -6.7305 17 7 7.1360 -1.7454 -6.4880 18 14 7.0354 0.3438 -8.3048 19 1 8.2256 1.2012 -8.0729 20 1 7.3340 -0.6379 -9.3782 21 1 5.8871 1.1915 -8.7146 22 6 4.4121 0.1054 -3.7267 23 6 4.6318 -2.2888 0.0052 24 6 5.6096 -1.4348 0.8297 25 6 4.4091 -0.5432 1.1884 26 1 -0.3634 0.0771 1.0248 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4455 29 1 1.9340 -1.9135 -0.8429 30 1 2.0636 -1.8380 0.9308 31 1 3.2805 -2.5123 -1.8122 32 1 2.4829 -1.9469 -3.3026 33 1 3.9750 -3.8013 -3.8590 34 1 5.3340 -2.9918 -3.0416 35 1 3.8192 -1.8992 -5.4562 36 1 5.4245 -2.6659 -5.5080 37 1 7.7481 -2.1431 -7.1268 38 1 3.5434 0.3577 -4.3350 39 1 4.9031 1.0199 -3.3938 40 1 5.0443 -2.6311 -0.9438 41 1 4.1619 -3.0890 0.5770 42 1 6.0340 -1.9605 1.6851 43 1 6.3639 -0.9297 0.2264 44 1 3.8781 -0.8653 2.0842 45 1 4.6421 0.5216 1.1932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557461820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = -58.302165 kcal Electronic energy + Delta-G solvation = -25416.537363 eV Core-core repulsion = 22013.541752 eV Total energy + Delta-G solvation = -3402.995611 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02853 -38.85293 -37.61183 -36.36520 -33.46942 -31.71630 -31.22092 -30.29640 -29.15530 -25.79033 -25.27079 -24.93954 -23.46581 -21.68643 -21.01674 -19.65204 -19.15822 -17.83515 -16.58367 -16.16482 -15.87732 -15.77767 -15.19800 -15.06738 -14.65909 -14.48704 -13.88144 -13.61355 -13.38783 -13.21962 -12.93050 -12.71616 -12.52418 -12.35100 -12.24565 -12.01096 -11.95045 -11.85528 -11.56203 -10.97237 -10.86830 -10.77815 -10.68711 -10.49261 -10.25836 -10.19682 -9.93198 -9.74752 -9.45804 -9.40505 -9.07156 -8.78622 -8.36939 -7.80354 -6.01001 -4.07698 2.02498 3.18013 3.30861 3.37306 3.40671 3.58070 3.94110 4.43650 4.48906 4.65894 4.70149 4.81448 4.93090 5.05541 5.14915 5.26449 5.29142 5.33954 5.39120 5.48711 5.60120 5.63759 5.67337 5.77795 5.82976 5.89329 5.97279 6.12653 6.23149 6.27271 6.35265 6.41000 6.49687 6.52365 6.70653 6.85011 7.04426 7.20552 7.35629 7.58352 7.70304 7.94201 8.08490 8.12363 8.39924 8.83168 8.96525 9.57108 11.04557 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.004579 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.586282 B = 6113.299658 C = 6368.967244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.335 3.665 3 O -0.424 6.424 4 C -0.158 4.158 5 C -0.095 4.095 6 C 0.536 3.464 7 O -0.527 6.527 8 N -0.605 5.605 9 C 0.103 3.897 10 C -0.135 4.135 11 C -0.111 4.111 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.513 4.513 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.120 3.880 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.114 4.114 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.260 0.740 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 -6.052 14.173 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.208 3.792 3 O -0.294 6.294 4 C -0.196 4.196 5 C -0.099 4.099 6 C 0.322 3.678 7 O -0.403 6.403 8 N -0.338 5.338 9 C -0.021 4.021 10 C -0.173 4.173 11 C -0.149 4.149 12 C 0.022 3.978 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.001 4.001 23 C -0.170 4.170 24 C -0.178 4.178 25 C -0.151 4.151 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.072 -4.978 14.160 18.651 hybrid contribution 0.076 0.125 -1.008 1.019 sum -10.996 -4.852 13.151 17.816 Atomic orbital electron populations 1.22270 0.94764 1.04609 1.04279 1.24584 0.91813 0.90616 0.72157 1.90580 1.71366 1.34472 1.33028 1.22311 0.94079 0.98253 1.04930 1.21819 0.93999 0.97699 0.96335 1.19593 0.78009 0.86966 0.83202 1.90648 1.46334 1.18122 1.85167 1.48189 1.62404 1.16814 1.06384 1.21831 0.96884 0.83354 0.99981 1.21944 0.98366 0.97882 0.99147 1.21613 0.99983 0.98965 0.94367 1.18965 0.92951 0.91756 0.94149 0.95343 1.21089 1.26559 1.03928 1.03591 0.92538 1.24923 0.95680 0.94935 0.98217 1.69870 1.30925 1.15850 1.36186 0.86590 0.78848 0.79539 0.83006 1.20666 1.21258 1.19898 1.21944 0.98290 0.95355 0.84522 1.23152 0.96936 0.95268 1.01661 1.22825 0.96983 0.98043 0.99991 1.22831 0.96097 1.01804 0.94414 0.89042 0.89773 0.90002 0.87905 0.87665 0.90480 0.92414 0.92533 0.92358 0.94662 0.88689 0.93019 0.93069 0.90523 0.90017 0.89324 0.91286 0.89898 0.90180 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 10.27 36.00 0.37 -1.28 16 2 C 0.34 4.12 6.92 -29.04 -0.20 3.92 16 3 O -0.42 -7.42 14.47 -13.01 -0.19 -7.61 16 4 C -0.16 -1.63 4.73 -27.88 -0.13 -1.76 16 5 C -0.10 -1.31 0.09 -154.76 -0.01 -1.33 16 6 C 0.54 10.20 5.00 -10.98 -0.05 10.14 16 7 O -0.53 -12.30 14.35 -13.45 -0.19 -12.49 16 8 N -0.60 -11.51 2.98 -173.03 -0.52 -12.02 16 9 C 0.10 1.57 4.65 -3.94 -0.02 1.55 16 10 C -0.14 -2.35 5.94 -26.84 -0.16 -2.51 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 12 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.51 -14.07 8.56 -34.43 -0.29 -14.37 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.12 2.70 5.65 -3.71 -0.02 2.68 16 23 C -0.13 -1.57 5.89 -25.92 -0.15 -1.72 16 24 C -0.14 -1.81 7.80 -25.92 -0.20 -2.01 16 25 C -0.11 -1.52 6.68 -25.83 -0.17 -1.69 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.10 0.91 5.91 -51.93 -0.31 0.61 16 30 H 0.11 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.08 0.94 3.50 -51.93 -0.18 0.76 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.06 7.33 -51.93 -0.38 0.68 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.89 7.03 -51.93 -0.37 1.52 16 40 H 0.08 1.10 5.85 -51.93 -0.30 0.80 16 41 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 45 H 0.08 1.41 7.36 -51.93 -0.38 1.02 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -33.13 343.37 -8.86 -41.99 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.26 Total: 1.56 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.49 Total: -8.52 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.11 Total: -36.39 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.38 Total: -20.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.13 -8.86 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557461820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.309 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds