Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20766 * 119.99694 * 2 1 4 4 C 1.50698 * 120.00330 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47532 * 175.17662 * 4 2 1 6 6 C 1.50704 * 112.84653 * 305.67843 * 5 4 2 7 7 O 1.21283 * 120.00211 * 110.09026 * 6 5 4 8 8 N 1.34777 * 119.99710 * 290.08623 * 6 5 4 9 9 C 1.46917 * 120.63208 * 4.42816 * 8 6 5 10 10 C 1.52763 * 109.00771 * 233.57841 * 9 8 6 11 11 C 1.53032 * 109.38676 * 305.58694 * 10 9 8 12 12 C 1.53043 * 109.53548 * 61.23592 * 11 10 9 13 13 H 1.09004 * 109.49704 * 58.59242 * 12 11 10 14 14 C 1.50711 * 109.49908 * 178.68291 * 12 11 10 15 15 H 1.07998 * 119.99443 * 119.83931 * 14 12 11 16 16 C 1.37878 * 119.99858 * 299.84340 * 14 12 11 17 17 N 1.31512 * 120.00335 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99791 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.47005 * 89.99748 * 18 16 14 20 20 H 1.48499 * 109.47249 * 209.99832 * 18 16 14 21 21 H 1.48500 * 109.47442 * 330.00113 * 18 16 14 22 22 C 1.46927 * 120.62730 * 184.70017 * 8 6 5 23 23 C 1.53779 * 113.61783 * 174.48101 * 5 4 2 24 24 C 1.53786 * 87.07762 * 219.93426 * 23 5 4 25 25 C 1.53776 * 87.17578 * 25.38935 * 24 23 5 26 26 H 1.09004 * 109.47357 * 274.30012 * 1 2 3 27 27 H 1.08994 * 109.47246 * 34.30899 * 1 2 3 28 28 H 1.09003 * 109.46876 * 154.30809 * 1 2 3 29 29 H 1.09004 * 109.46978 * 55.18234 * 4 2 1 30 30 H 1.08998 * 109.47741 * 295.18224 * 4 2 1 31 31 H 1.09001 * 109.58910 * 353.41072 * 9 8 6 32 32 H 1.08998 * 109.59265 * 113.84056 * 9 8 6 33 33 H 1.09005 * 109.56330 * 185.54968 * 10 9 8 34 34 H 1.09001 * 109.35981 * 65.50338 * 10 9 8 35 35 H 1.08999 * 109.46362 * 301.22428 * 11 10 9 36 36 H 1.09003 * 109.46428 * 181.25644 * 11 10 9 37 37 H 0.96996 * 120.00335 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.58812 * 246.15760 * 22 8 6 39 39 H 1.08999 * 109.59038 * 6.44383 * 22 8 6 40 40 H 1.08993 * 113.61591 * 105.38804 * 23 5 4 41 41 H 1.08998 * 113.61131 * 334.47804 * 23 5 4 42 42 H 1.09001 * 113.61077 * 139.97883 * 24 23 5 43 43 H 1.09001 * 113.61476 * 270.79320 * 24 23 5 44 44 H 1.09000 * 113.61901 * 89.15391 * 25 24 23 45 45 H 1.08998 * 113.61678 * 220.06037 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7603 -1.0281 -0.1208 6 6 4.1029 -0.1742 -1.3144 7 8 4.4847 0.9658 -1.1550 8 7 3.9852 -0.6776 -2.5591 9 6 3.4330 -2.0221 -2.7737 10 6 4.4176 -2.8365 -3.6110 11 6 4.7393 -2.0759 -4.8993 12 6 5.3908 -0.7350 -4.5529 13 1 6.2981 -0.9100 -3.9747 14 6 5.7367 -0.0008 -5.8228 15 1 5.3027 0.9679 -6.0217 16 6 6.6072 -0.5659 -6.7305 17 7 7.1360 -1.7454 -6.4880 18 14 7.0354 0.3438 -8.3048 19 1 8.2256 1.2012 -8.0729 20 1 7.3340 -0.6379 -9.3782 21 1 5.8871 1.1915 -8.7146 22 6 4.4121 0.1054 -3.7267 23 6 4.6318 -2.2888 0.0052 24 6 5.6096 -1.4348 0.8297 25 6 4.4091 -0.5432 1.1884 26 1 -0.3634 0.0771 1.0248 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4455 29 1 1.9340 -1.9135 -0.8429 30 1 2.0636 -1.8380 0.9308 31 1 3.2805 -2.5123 -1.8122 32 1 2.4829 -1.9469 -3.3026 33 1 3.9750 -3.8013 -3.8590 34 1 5.3340 -2.9918 -3.0416 35 1 3.8192 -1.8992 -5.4562 36 1 5.4245 -2.6659 -5.5080 37 1 7.7481 -2.1431 -7.1268 38 1 3.5434 0.3577 -4.3350 39 1 4.9031 1.0199 -3.3938 40 1 5.0443 -2.6311 -0.9438 41 1 4.1619 -3.0890 0.5770 42 1 6.0340 -1.9605 1.6851 43 1 6.3639 -0.9297 0.2264 44 1 3.8781 -0.8653 2.0842 45 1 4.6421 0.5216 1.1932 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557461820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = -78.574621 kcal Electronic energy + Delta-G solvation = -25417.416443 eV Core-core repulsion = 22013.541752 eV Total energy + Delta-G solvation = -3403.874690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23257 -40.03174 -38.94334 -37.92080 -35.37532 -33.11215 -32.51521 -31.95566 -30.02121 -27.31212 -26.64402 -26.44711 -24.67504 -23.35592 -22.39284 -20.79131 -20.49725 -19.30871 -18.38328 -17.56934 -17.13835 -16.88772 -16.64041 -16.29527 -16.02297 -15.74868 -15.38640 -14.97784 -14.88879 -14.55366 -14.48196 -14.14388 -13.62168 -13.54338 -13.46822 -13.24798 -13.05944 -12.91146 -12.87268 -12.68904 -12.58916 -12.47291 -11.95150 -11.86152 -11.82026 -11.62324 -11.46709 -11.25370 -11.15859 -10.85633 -10.54085 -10.40373 -10.35304 -9.44939 -8.13233 -6.28483 1.16464 1.37992 1.39353 1.49412 1.76477 2.13306 2.41827 3.10801 3.12892 3.44087 3.61553 3.73296 3.79961 3.93717 4.11861 4.25258 4.27751 4.36692 4.42814 4.48436 4.58205 4.61654 4.73663 4.77257 4.79379 4.81456 4.85381 4.85839 4.88653 4.98325 5.02280 5.12665 5.17007 5.20014 5.27480 5.34113 5.44854 5.52448 5.58789 5.61418 5.91391 6.12476 6.33013 6.64945 6.75431 6.80123 7.36737 7.39630 8.90422 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.004579 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.586282 B = 6113.299658 C = 6368.967244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.329 3.671 3 O -0.492 6.492 4 C -0.156 4.156 5 C -0.098 4.098 6 C 0.526 3.474 7 O -0.585 6.585 8 N -0.610 5.610 9 C 0.102 3.898 10 C -0.127 4.127 11 C -0.104 4.104 12 C 0.045 3.955 13 H -0.016 1.016 14 C -0.542 4.542 15 H 0.046 0.954 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.954 3.046 19 H -0.281 1.281 20 H -0.276 1.276 21 H -0.269 1.269 22 C 0.133 3.867 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.111 4.111 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.037 0.963 44 H 0.122 0.878 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -9.435 15.593 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.207 3.793 3 O -0.368 6.368 4 C -0.193 4.193 5 C -0.102 4.102 6 C 0.315 3.685 7 O -0.465 6.465 8 N -0.342 5.342 9 C -0.019 4.019 10 C -0.165 4.165 11 C -0.142 4.142 12 C 0.026 3.974 13 H 0.002 0.998 14 C -0.580 4.580 15 H 0.065 0.935 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.779 3.221 19 H -0.207 1.207 20 H -0.201 1.201 21 H -0.194 1.194 22 C 0.010 3.990 23 C -0.154 4.154 24 C -0.185 4.185 25 C -0.149 4.149 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.176 0.824 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.161 0.839 42 H 0.118 0.882 43 H 0.056 0.944 44 H 0.140 0.860 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.845 -8.415 15.583 22.479 hybrid contribution 0.982 1.231 -1.434 2.130 sum -12.862 -7.184 14.149 20.426 Atomic orbital electron populations 1.22294 0.91581 1.05687 1.05790 1.25453 0.93835 0.90474 0.69535 1.90602 1.72921 1.36823 1.36450 1.22508 0.90392 0.97806 1.08600 1.21817 0.97317 0.97684 0.93345 1.20713 0.76401 0.86953 0.84401 1.90614 1.48687 1.21145 1.86049 1.48282 1.62396 1.18040 1.05445 1.22141 0.96622 0.80949 1.02206 1.21857 0.98933 0.99227 0.96458 1.21402 0.98792 0.97266 0.96769 1.18846 0.91945 0.93732 0.92917 0.99813 1.21422 1.27477 1.04035 1.05088 0.93528 1.25648 0.95412 0.95712 1.01139 1.69993 1.31023 1.16794 1.37113 0.85623 0.78465 0.78531 0.79432 1.20675 1.20069 1.19383 1.21450 0.97451 0.94256 0.85824 1.23240 0.95614 0.95219 1.01286 1.22804 0.96425 0.98419 1.00828 1.22893 0.96824 0.99188 0.96003 0.86742 0.91360 0.86637 0.85421 0.82420 0.86080 0.90250 0.88606 0.93524 0.94509 0.91799 0.92816 0.92886 0.94244 0.91709 0.83859 0.88220 0.94390 0.85997 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 10.27 71.23 0.73 -1.77 16 2 C 0.33 7.28 6.92 29.10 0.20 7.48 16 3 O -0.49 -17.58 14.47 16.71 0.24 -17.34 16 4 C -0.16 -2.41 4.73 29.85 0.14 -2.27 16 5 C -0.10 -2.49 0.09 -52.34 0.00 -2.49 16 6 C 0.53 20.57 5.00 87.66 0.44 21.01 16 7 O -0.59 -29.64 14.35 15.14 0.22 -29.42 16 8 N -0.61 -23.47 2.98 -819.74 -2.44 -25.91 16 9 C 0.10 2.82 4.65 86.22 0.40 3.22 16 10 C -0.13 -4.15 5.94 30.53 0.18 -3.97 16 11 C -0.10 -4.71 4.96 30.62 0.15 -4.56 16 12 C 0.04 2.36 2.25 -11.46 -0.03 2.33 16 13 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 14 C -0.54 -31.24 8.56 25.60 0.22 -31.02 16 15 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 16 C 0.02 1.15 5.30 84.66 0.45 1.60 16 17 N -0.91 -52.65 11.32 21.45 0.24 -52.40 16 18 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C 0.13 6.38 5.65 86.36 0.49 6.86 16 23 C -0.12 -2.29 5.89 31.12 0.18 -2.11 16 24 C -0.15 -3.60 7.80 31.12 0.24 -3.35 16 25 C -0.11 -2.83 6.68 31.18 0.21 -2.62 16 26 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.12 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.13 1.38 5.91 -2.38 -0.01 1.37 16 30 H 0.16 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.12 2.30 3.50 -2.39 -0.01 2.29 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.05 1.64 7.33 -2.39 -0.02 1.63 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 3.30 6.05 -2.39 -0.01 3.29 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 2.13 7.03 -2.39 -0.02 2.12 16 40 H 0.06 1.55 5.85 -2.39 -0.01 1.53 16 41 H 0.14 1.37 8.10 -2.39 -0.02 1.35 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 2.04 8.06 -2.39 -0.02 2.02 16 45 H 0.04 1.34 7.36 -2.39 -0.02 1.33 16 Total: -1.00 -83.78 343.37 5.27 -78.52 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.97 Total: 11.54 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.01 Total: -11.66 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -2.20 Total: -78.32 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: 0.46 Total: -46.75 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -83.78 5.27 -78.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557461820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.059 kcal (2) G-P(sol) polarization free energy of solvation -83.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds