Wall clock time and date at job start Tue Mar 31 2020 07:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86794 * 120.00347 * 2 1 4 4 H 1.48500 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47378 * 300.00289 * 3 2 1 6 6 H 1.48504 * 109.47201 * 59.99702 * 3 2 1 7 7 C 1.38817 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00512 * 163.06457 * 7 2 1 9 9 N 1.36941 * 119.99480 * 343.06690 * 7 2 1 10 10 C 1.46922 * 120.63456 * 331.84217 * 9 7 2 11 11 C 1.53194 * 108.77619 * 233.61022 * 10 9 7 12 12 C 1.53039 * 109.31286 * 305.36382 * 11 10 9 13 13 C 1.53047 * 109.53446 * 61.36649 * 12 11 10 14 14 H 1.08998 * 109.49513 * 58.62145 * 13 12 11 15 15 C 1.52996 * 109.49260 * 178.67942 * 13 12 11 16 16 N 1.46500 * 109.47147 * 184.93339 * 15 13 12 17 17 C 1.34773 * 120.00140 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00034 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00040 * 179.72371 * 17 16 15 20 20 C 1.55699 * 119.19715 * 252.77357 * 19 17 16 21 21 C 1.55978 * 81.52821 * 198.66663 * 20 19 17 22 22 C 1.54882 * 119.96517 * 155.27687 * 19 17 16 23 23 C 1.56746 * 106.43411 * 301.60488 * 21 20 19 24 24 N 1.50238 * 117.57435 * 28.06638 * 19 17 16 25 25 C 1.46938 * 120.60124 * 151.86836 * 9 7 2 26 26 H 0.97003 * 120.00367 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58534 * 113.82499 * 10 9 7 28 28 H 1.09002 * 109.70374 * 353.47092 * 10 9 7 29 29 H 1.08997 * 109.49486 * 185.41151 * 11 10 9 30 30 H 1.08997 * 109.49677 * 65.31875 * 11 10 9 31 31 H 1.08998 * 109.46266 * 301.34783 * 12 11 10 32 32 H 1.08996 * 109.44456 * 181.37530 * 12 11 10 33 33 H 1.09003 * 109.47417 * 64.93816 * 15 13 12 34 34 H 1.08997 * 109.47820 * 304.93620 * 15 13 12 35 35 H 0.97004 * 119.99860 * 0.02562 * 16 15 13 36 36 H 1.09007 * 114.52166 * 311.82607 * 20 19 17 37 37 H 1.09000 * 114.52470 * 85.50113 * 20 19 17 38 38 H 1.09000 * 120.16940 * 162.53253 * 21 20 19 39 39 H 1.09000 * 114.44034 * 274.06224 * 22 19 17 40 40 H 1.09000 * 114.44012 * 47.43466 * 22 19 17 41 41 H 1.09000 * 111.44971 * 158.69896 * 23 21 20 42 42 H 1.09004 * 111.44575 * 283.68928 * 23 21 20 43 43 H 1.00897 * 111.00171 * 296.57811 * 24 19 17 44 44 H 1.08997 * 109.61507 * 6.61338 * 25 9 7 45 45 H 1.09004 * 109.56225 * 246.19354 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2719 9 7 1.3699 -2.3622 0.3465 10 6 0.2261 -2.3397 1.2683 11 6 0.4978 -3.3183 2.4152 12 6 0.8125 -4.7002 1.8376 13 6 2.0678 -4.6168 0.9661 14 1 2.9029 -4.2532 1.5650 15 6 2.4004 -6.0051 0.4159 16 7 3.6656 -5.9483 -0.3205 17 6 4.1606 -7.0616 -0.8967 18 8 3.5584 -8.1104 -0.8059 19 6 5.4590 -7.0018 -1.6595 20 6 5.4316 -7.0914 -3.2136 21 6 6.9314 -7.4562 -2.9888 22 6 6.3181 -8.2797 -1.8259 23 6 7.5719 -6.2474 -2.2236 24 7 6.4591 -5.9583 -1.2494 25 6 1.8147 -3.6528 -0.1971 26 1 -0.4851 0.8400 -0.0004 27 1 -0.6771 -2.6408 0.7374 28 1 0.0965 -1.3343 1.6688 29 1 -0.3827 -3.3831 3.0544 30 1 1.3475 -2.9664 3.0001 31 1 -0.0277 -5.0408 1.2325 32 1 0.9822 -5.4039 2.6525 33 1 1.6046 -6.3307 -0.2540 34 1 2.4920 -6.7109 1.2414 35 1 4.1475 -5.1095 -0.3928 36 1 4.8227 -7.9043 -3.6093 37 1 5.2683 -6.1395 -3.7189 38 1 7.5017 -7.9416 -3.7807 39 1 7.0028 -8.4735 -1.0003 40 1 5.7594 -9.1607 -2.1420 41 1 8.4818 -6.5431 -1.7015 42 1 7.7546 -5.4050 -2.8909 43 1 6.0923 -5.0295 -1.3935 44 1 2.7356 -3.5136 -0.7633 45 1 1.0413 -4.0607 -0.8481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:22 Heat of formation + Delta-G solvation = 38.132205 kcal Electronic energy + Delta-G solvation = -24210.806184 eV Core-core repulsion = 20844.285032 eV Total energy + Delta-G solvation = -3366.521152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59014 -39.02937 -37.67811 -34.84571 -33.03129 -31.47639 -30.53285 -30.43300 -28.32698 -25.56647 -25.48067 -25.22233 -22.72887 -22.02393 -20.96986 -20.28417 -19.60682 -18.99905 -17.88565 -16.66721 -16.06213 -15.56212 -15.12006 -14.92330 -14.83166 -14.49576 -14.19646 -13.70553 -13.44133 -13.30029 -12.84712 -12.81210 -12.37428 -12.34294 -12.18664 -12.13662 -11.84165 -11.65251 -11.34089 -11.27032 -11.03874 -10.74751 -10.50378 -10.47264 -10.23143 -10.19297 -9.97355 -9.83836 -9.53716 -9.43219 -9.11208 -8.91529 -8.49438 -6.69654 -5.81687 -3.24837 2.52014 3.24110 3.34205 3.42359 3.43968 3.60274 3.93604 4.09444 4.26258 4.44156 4.46132 4.87253 5.07062 5.09918 5.28705 5.32772 5.37477 5.42886 5.44088 5.46406 5.52365 5.60749 5.63485 5.70903 5.74456 5.82312 5.95126 5.97114 6.00568 6.22747 6.32014 6.36745 6.50470 6.57521 6.69269 6.75748 6.81165 6.85028 6.94867 7.38265 7.59650 7.65667 7.76106 8.25283 8.41747 9.18101 9.81579 10.38582 11.26561 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.003990 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.502354 B = 7015.556654 C = 8271.802497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.117 4.117 14 H 0.074 0.926 15 C 0.126 3.874 16 N -0.714 5.714 17 C 0.554 3.446 18 O -0.543 6.543 19 C 0.021 3.979 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.107 4.107 23 C 0.040 3.960 24 N -0.627 5.627 25 C 0.155 3.845 26 H 0.253 0.747 27 H 0.017 0.983 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.337 0.663 44 H 0.049 0.951 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.330 -13.035 -3.175 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.092 0.908 15 C 0.002 3.998 16 N -0.365 5.365 17 C 0.339 3.661 18 O -0.419 6.419 19 C -0.074 4.074 20 C -0.178 4.178 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.089 4.089 24 N -0.255 5.255 25 C 0.028 3.972 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.238 0.762 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.152 0.848 44 H 0.067 0.933 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.042 -13.913 -2.410 17.925 hybrid contribution 0.227 1.706 -0.895 1.939 sum 11.269 -12.207 -3.305 16.939 Atomic orbital electron populations 1.70043 1.05290 1.25403 1.53792 1.25042 0.95263 0.98403 1.00840 0.86250 0.79349 0.84015 0.77298 1.20259 1.21748 1.21538 1.19198 0.92489 0.84823 1.41833 0.91732 1.44038 1.35904 1.01296 1.50124 1.20789 0.88518 0.98299 0.88026 1.22172 1.00121 0.95965 0.99837 1.21340 0.96696 0.97762 0.97969 1.21952 0.98907 0.93544 0.99414 0.90791 1.21495 0.84686 0.98119 0.95471 1.46051 1.24634 1.11698 1.54076 1.19286 0.84629 0.83761 0.78419 1.90691 1.60506 1.30042 1.60675 1.24063 0.91692 0.96829 0.94831 1.24416 0.96618 1.02993 0.93819 1.24659 0.95045 0.98056 0.98638 1.23671 0.97537 0.95103 0.98168 1.23775 0.95469 0.96669 0.92975 1.65683 1.06246 1.05877 1.47708 1.20886 0.97345 0.86868 0.92100 0.93668 0.96481 0.89576 0.93173 0.92727 0.92489 0.93404 0.91565 0.91896 0.76209 0.87726 0.90903 0.86741 0.90406 0.88461 0.88829 0.91195 0.84796 0.93299 0.96407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -14.38 2.99 -172.31 -0.52 -14.89 16 10 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 12 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 13 C -0.12 -1.94 2.37 -90.50 -0.21 -2.15 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 16 N -0.71 -9.94 5.31 -60.29 -0.32 -10.26 16 17 C 0.55 8.07 7.62 -10.98 -0.08 7.99 16 18 O -0.54 -9.60 16.86 5.56 0.09 -9.50 16 19 C 0.02 0.24 2.27 -134.43 -0.30 -0.07 16 20 C -0.14 -1.32 7.66 -30.41 -0.23 -1.55 16 21 C -0.15 -1.15 6.39 -91.86 -0.59 -1.74 16 22 C -0.11 -1.08 7.10 -31.32 -0.22 -1.30 16 23 C 0.04 0.32 7.74 0.34 0.00 0.32 16 24 N -0.63 -6.40 7.63 -97.37 -0.74 -7.14 16 25 C 0.15 3.09 5.60 -3.71 -0.02 3.07 16 26 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 5.16 6.80 -40.82 -0.28 4.88 16 36 H 0.10 0.99 7.87 -51.92 -0.41 0.59 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 40 H 0.10 0.99 7.86 -51.93 -0.41 0.58 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.34 3.21 8.26 -39.29 -0.32 2.89 16 44 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -30.78 351.90 -10.39 -41.17 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.57 Total: 5.42 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.23 Total: -1.13 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.96 Total: -57.49 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.78 -10.39 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.302 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds