Wall clock time and date at job start Tue Mar 31 2020 07:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86794 * 120.00347 * 2 1 4 4 H 1.48500 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47378 * 300.00289 * 3 2 1 6 6 H 1.48504 * 109.47201 * 59.99702 * 3 2 1 7 7 C 1.38817 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00512 * 163.06457 * 7 2 1 9 9 N 1.36941 * 119.99480 * 343.06690 * 7 2 1 10 10 C 1.46922 * 120.63456 * 331.84217 * 9 7 2 11 11 C 1.53194 * 108.77619 * 233.61022 * 10 9 7 12 12 C 1.53039 * 109.31286 * 305.36382 * 11 10 9 13 13 C 1.53047 * 109.53446 * 61.36649 * 12 11 10 14 14 H 1.08998 * 109.49513 * 58.62145 * 13 12 11 15 15 C 1.52996 * 109.49260 * 178.67942 * 13 12 11 16 16 N 1.46500 * 109.47147 * 184.93339 * 15 13 12 17 17 C 1.34773 * 120.00140 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00034 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00040 * 179.72371 * 17 16 15 20 20 C 1.55699 * 119.19715 * 252.77357 * 19 17 16 21 21 C 1.55978 * 81.52821 * 198.66663 * 20 19 17 22 22 C 1.54882 * 119.96517 * 155.27687 * 19 17 16 23 23 C 1.56746 * 106.43411 * 301.60488 * 21 20 19 24 24 N 1.50238 * 117.57435 * 28.06638 * 19 17 16 25 25 C 1.46938 * 120.60124 * 151.86836 * 9 7 2 26 26 H 0.97003 * 120.00367 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58534 * 113.82499 * 10 9 7 28 28 H 1.09002 * 109.70374 * 353.47092 * 10 9 7 29 29 H 1.08997 * 109.49486 * 185.41151 * 11 10 9 30 30 H 1.08997 * 109.49677 * 65.31875 * 11 10 9 31 31 H 1.08998 * 109.46266 * 301.34783 * 12 11 10 32 32 H 1.08996 * 109.44456 * 181.37530 * 12 11 10 33 33 H 1.09003 * 109.47417 * 64.93816 * 15 13 12 34 34 H 1.08997 * 109.47820 * 304.93620 * 15 13 12 35 35 H 0.97004 * 119.99860 * 0.02562 * 16 15 13 36 36 H 1.09007 * 114.52166 * 311.82607 * 20 19 17 37 37 H 1.09000 * 114.52470 * 85.50113 * 20 19 17 38 38 H 1.09000 * 120.16940 * 162.53253 * 21 20 19 39 39 H 1.09000 * 114.44034 * 274.06224 * 22 19 17 40 40 H 1.09000 * 114.44012 * 47.43466 * 22 19 17 41 41 H 1.09000 * 111.44971 * 158.69896 * 23 21 20 42 42 H 1.09004 * 111.44575 * 283.68928 * 23 21 20 43 43 H 1.00897 * 111.00171 * 296.57811 * 24 19 17 44 44 H 1.08997 * 109.61507 * 6.61338 * 25 9 7 45 45 H 1.09004 * 109.56225 * 246.19354 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2719 9 7 1.3699 -2.3622 0.3465 10 6 0.2261 -2.3397 1.2683 11 6 0.4978 -3.3183 2.4152 12 6 0.8125 -4.7002 1.8376 13 6 2.0678 -4.6168 0.9661 14 1 2.9029 -4.2532 1.5650 15 6 2.4004 -6.0051 0.4159 16 7 3.6656 -5.9483 -0.3205 17 6 4.1606 -7.0616 -0.8967 18 8 3.5584 -8.1104 -0.8059 19 6 5.4590 -7.0018 -1.6595 20 6 5.4316 -7.0914 -3.2136 21 6 6.9314 -7.4562 -2.9888 22 6 6.3181 -8.2797 -1.8259 23 6 7.5719 -6.2474 -2.2236 24 7 6.4591 -5.9583 -1.2494 25 6 1.8147 -3.6528 -0.1971 26 1 -0.4851 0.8400 -0.0004 27 1 -0.6771 -2.6408 0.7374 28 1 0.0965 -1.3343 1.6688 29 1 -0.3827 -3.3831 3.0544 30 1 1.3475 -2.9664 3.0001 31 1 -0.0277 -5.0408 1.2325 32 1 0.9822 -5.4039 2.6525 33 1 1.6046 -6.3307 -0.2540 34 1 2.4920 -6.7109 1.2414 35 1 4.1475 -5.1095 -0.3928 36 1 4.8227 -7.9043 -3.6093 37 1 5.2683 -6.1395 -3.7189 38 1 7.5017 -7.9416 -3.7807 39 1 7.0028 -8.4735 -1.0003 40 1 5.7594 -9.1607 -2.1420 41 1 8.4818 -6.5431 -1.7015 42 1 7.7546 -5.4050 -2.8909 43 1 6.0923 -5.0295 -1.3935 44 1 2.7356 -3.5136 -0.7633 45 1 1.0413 -4.0607 -0.8481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:22 Heat of formation + Delta-G solvation = 16.857911 kcal Electronic energy + Delta-G solvation = -24211.728706 eV Core-core repulsion = 20844.285032 eV Total energy + Delta-G solvation = -3367.443674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.40338 -40.23754 -39.17897 -36.30319 -34.70236 -32.35127 -32.28063 -31.90960 -29.23591 -27.26051 -26.64536 -26.32030 -23.97178 -23.55800 -22.40715 -21.20287 -20.76078 -20.22212 -18.92906 -18.52031 -17.18542 -16.85860 -16.60137 -16.10270 -15.88672 -15.70319 -15.39263 -15.33670 -15.02518 -14.52648 -14.10724 -14.03608 -13.84564 -13.72711 -13.52310 -13.01077 -12.97501 -12.89533 -12.60146 -12.53514 -12.41590 -12.24543 -12.01398 -11.95221 -11.83381 -11.59160 -11.36997 -11.20626 -11.11318 -10.81689 -10.54009 -10.13261 -9.82621 -8.67776 -7.86556 -5.32628 1.43151 1.46605 1.49148 1.58997 2.15480 2.51371 2.82863 3.21924 3.28637 3.35611 3.45284 3.57230 3.67898 3.97377 3.99672 4.02039 4.11141 4.39627 4.43263 4.55262 4.56777 4.62708 4.70066 4.73929 4.80485 4.82934 4.86274 4.88367 4.90286 4.97220 5.00217 5.08679 5.09796 5.20704 5.26242 5.31898 5.36959 5.45735 5.56966 5.66930 5.78056 6.08753 6.39100 6.48915 7.12809 7.15210 7.86210 8.38599 9.19912 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.003990 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.502354 B = 7015.556654 C = 8271.802497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.100 4.100 14 H 0.075 0.925 15 C 0.136 3.864 16 N -0.711 5.711 17 C 0.550 3.450 18 O -0.579 6.579 19 C 0.008 3.992 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.112 4.112 23 C 0.040 3.960 24 N -0.636 5.636 25 C 0.154 3.846 26 H 0.249 0.751 27 H -0.008 1.008 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.141 0.859 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.339 0.661 44 H 0.056 0.944 45 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.570 -13.750 -3.271 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.048 3.952 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.011 3.989 16 N -0.361 5.361 17 C 0.336 3.664 18 O -0.458 6.458 19 C -0.086 4.086 20 C -0.178 4.178 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.089 4.089 24 N -0.266 5.266 25 C 0.029 3.971 26 H 0.058 0.942 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.154 0.846 44 H 0.074 0.926 45 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 13.317 -14.639 -2.508 19.948 hybrid contribution -0.491 1.899 -0.883 2.151 sum 12.826 -12.740 -3.391 18.393 Atomic orbital electron populations 1.70201 1.06802 1.25706 1.55546 1.25798 0.95966 1.01529 1.01331 0.85238 0.78839 0.79939 0.76620 1.18711 1.22131 1.21913 1.19577 0.92935 0.85871 1.40703 0.91123 1.44304 1.35873 1.02229 1.50793 1.20621 0.87676 0.97741 0.89194 1.22001 1.00965 0.95886 0.98058 1.21340 0.96489 0.96848 0.98853 1.21708 0.99079 0.93345 0.97865 0.90657 1.21308 0.85034 0.96921 0.95588 1.46031 1.24253 1.12039 1.53763 1.19859 0.85444 0.83088 0.77979 1.90665 1.61851 1.31249 1.62077 1.24111 0.90693 0.98196 0.95630 1.24432 0.98073 1.03202 0.92105 1.24662 0.94096 0.97194 0.98037 1.23710 0.97417 0.94654 0.99196 1.23912 0.94860 0.97252 0.92835 1.65688 1.06391 1.05659 1.48819 1.20998 0.97010 0.85780 0.93362 0.94220 0.98964 0.93011 0.91219 0.92831 0.92597 0.90238 0.92351 0.91139 0.75497 0.88022 0.90469 0.84163 0.90826 0.88973 0.87982 0.89540 0.84598 0.92579 0.97655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.18 11.19 21.65 0.24 -54.94 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 3 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.26 -13.94 9.58 84.03 0.81 -13.13 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -29.83 2.99 -699.07 -2.09 -31.93 16 10 C 0.17 8.31 5.30 86.36 0.46 8.77 16 11 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 12 C -0.10 -3.01 5.17 30.62 0.16 -2.85 16 13 C -0.10 -3.13 2.37 -10.72 -0.03 -3.16 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 C 0.14 3.86 5.07 86.38 0.44 4.29 16 16 N -0.71 -19.00 5.31 -463.07 -2.46 -21.45 16 17 C 0.55 15.62 7.62 87.66 0.67 16.29 16 18 O -0.58 -20.36 16.86 -3.03 -0.05 -20.41 16 19 C 0.01 0.18 2.27 -0.18 0.00 0.18 16 20 C -0.14 -2.39 7.66 28.21 0.22 -2.17 16 21 C -0.12 -1.58 6.39 -11.60 -0.07 -1.66 16 22 C -0.11 -2.09 7.10 27.62 0.20 -1.89 16 23 C 0.04 0.52 7.74 86.87 0.67 1.19 16 24 N -0.64 -11.77 7.63 -461.98 -3.52 -15.30 16 25 C 0.15 6.09 5.60 86.36 0.48 6.57 16 26 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 27 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 28 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.41 9.94 6.80 -92.71 -0.63 9.31 16 36 H 0.10 1.81 7.87 -2.38 -0.02 1.79 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.42 8.11 -2.39 -0.02 1.41 16 40 H 0.09 1.80 7.86 -2.39 -0.02 1.78 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.34 5.84 8.26 -89.70 -0.74 5.10 16 44 H 0.06 2.09 7.14 -2.39 -0.02 2.08 16 45 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -67.32 351.90 -1.64 -68.96 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.39 Total: 23.53 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.60 Total: 5.48 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -7.83 Total: -123.62 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.32 -1.64 -68.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.823 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds