Wall clock time and date at job start Tue Mar 31 2020 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47160 * 270.00028 * 3 2 1 5 5 H 1.48507 * 109.46919 * 29.99415 * 3 2 1 6 6 H 1.48496 * 109.47199 * 149.99811 * 3 2 1 7 7 C 1.38812 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00240 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00016 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46962 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.91754 * 308.90262 * 11 10 9 13 13 C 1.55156 * 111.00556 * 72.80873 * 11 10 9 14 14 C 1.54334 * 103.02232 * 153.37663 * 13 11 10 15 15 N 1.47024 * 107.26419 * 338.13993 * 14 13 11 16 16 C 1.34781 * 125.64583 * 178.84867 * 15 14 13 17 17 O 1.21280 * 119.99884 * 179.69318 * 16 15 14 18 18 C 1.50696 * 119.99697 * 359.69220 * 16 15 14 19 19 C 1.56245 * 116.69238 * 62.43095 * 18 16 15 20 20 C 1.54979 * 103.18216 * 158.94135 * 19 18 16 21 21 N 1.49516 * 105.24081 * 0.65214 * 20 19 18 22 22 C 1.51402 * 106.79381 * 70.59483 * 21 20 19 23 23 C 1.54660 * 105.15516 * 289.44190 * 22 21 20 24 24 C 1.50465 * 102.03833 * 324.87051 * 21 20 19 25 25 C 1.47428 * 108.70486 * 358.58735 * 15 14 13 26 26 H 0.96990 * 120.00024 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00066 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46772 * 59.99756 * 10 9 7 29 29 H 1.08994 * 109.47294 * 300.00572 * 10 9 7 30 30 H 1.09001 * 110.71866 * 271.94110 * 13 11 10 31 31 H 1.09002 * 110.71900 * 35.20669 * 13 11 10 32 32 H 1.09000 * 109.99057 * 218.66745 * 14 13 11 33 33 H 1.08994 * 109.77583 * 97.49437 * 14 13 11 34 34 H 1.08996 * 110.66678 * 277.38483 * 19 18 16 35 35 H 1.08997 * 110.66616 * 40.51599 * 19 18 16 36 36 H 1.09001 * 110.28195 * 241.72451 * 20 19 18 37 37 H 1.08993 * 110.39609 * 119.64366 * 20 19 18 38 38 H 1.09000 * 110.72553 * 170.33388 * 22 21 20 39 39 H 1.09005 * 110.04483 * 48.19304 * 22 21 20 40 40 H 1.08996 * 110.67187 * 240.45641 * 23 22 21 41 41 H 1.09001 * 110.67276 * 117.32060 * 23 22 21 42 42 H 1.09002 * 111.91048 * 297.80757 * 24 21 20 43 43 H 1.08995 * 111.91065 * 171.66711 * 24 21 20 44 44 H 1.08994 * 110.36782 * 143.19623 * 25 15 14 45 45 H 1.09001 * 110.36053 * 265.51865 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3253 -4.6998 0.7938 13 6 0.3765 -4.9645 -1.3823 14 6 0.0045 -6.4616 -1.4308 15 7 0.8817 -7.1602 -0.4799 16 6 0.8561 -8.4808 -0.2121 17 8 1.6338 -8.9520 0.5905 18 6 -0.1388 -9.3720 -0.9099 19 6 -0.0180 -9.4766 -2.4642 20 6 -0.7478 -10.8052 -2.7868 21 7 -1.2207 -11.3244 -1.4668 22 6 -2.3403 -10.4116 -1.0133 23 6 -1.6505 -9.0766 -0.6476 24 6 -0.1086 -10.9005 -0.5462 25 6 1.7981 -6.1779 0.1274 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6848 -3.7145 0.8906 29 1 2.6848 -3.7146 -0.8893 30 1 -0.5159 -4.3410 -1.4366 31 1 1.0705 -4.7171 -2.1855 32 1 0.1619 -6.8522 -2.4361 33 1 -1.0374 -6.5923 -1.1388 34 1 -0.5171 -8.6360 -2.9463 35 1 1.0280 -9.5289 -2.7661 36 1 -0.0581 -11.5132 -3.2462 37 1 -1.5958 -10.6222 -3.4466 38 1 -2.8470 -10.8262 -0.1419 39 1 -3.0507 -10.2595 -1.8260 40 1 -1.8182 -8.8314 0.4011 41 1 -2.0028 -8.2719 -1.2929 42 1 0.8408 -11.3639 -0.8149 43 1 -0.3583 -11.0745 0.5004 44 1 1.9722 -6.4191 1.1759 45 1 2.7414 -6.1513 -0.4183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690752036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:10 Heat of formation + Delta-G solvation = 3.671198 kcal Electronic energy + Delta-G solvation = -24127.800498 eV Core-core repulsion = 20759.785005 eV Total energy + Delta-G solvation = -3368.015493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40803 -39.44975 -37.53562 -34.74287 -32.45863 -31.11328 -30.99590 -30.12386 -28.95087 -28.36826 -25.59084 -23.64529 -22.90143 -22.42692 -21.61952 -20.69815 -20.10837 -18.93109 -17.15977 -16.86544 -16.44030 -16.22719 -15.75987 -15.63031 -14.76131 -14.30995 -13.84890 -13.67934 -13.56776 -13.46647 -13.22014 -13.10388 -12.66742 -12.63465 -12.47773 -12.46725 -12.01630 -11.75623 -11.71560 -11.54403 -11.22237 -10.95853 -10.88990 -10.71361 -10.66343 -10.53461 -10.42572 -10.09242 -9.88266 -9.72744 -9.40460 -8.91529 -8.68175 -6.96886 -5.80810 -3.09596 2.43140 2.84290 3.41146 3.45161 3.46693 3.48208 4.05933 4.15050 4.36020 4.51508 4.57278 4.66205 4.69147 4.74197 4.82994 4.86319 5.02891 5.12624 5.17628 5.19297 5.26892 5.38397 5.41900 5.47419 5.50114 5.52951 5.57679 5.64212 5.65555 5.75307 5.84243 5.96369 5.98613 6.06958 6.07832 6.17083 6.24716 6.33510 6.37637 6.67988 6.79232 7.44510 7.66725 8.05190 8.38096 9.49570 10.06108 10.40995 11.42084 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.002878 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.045871 B = 9725.399559 C =10025.029351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.122 4.122 14 C 0.097 3.903 15 N -0.610 5.610 16 C 0.564 3.436 17 O -0.539 6.539 18 C -0.126 4.126 19 C -0.136 4.136 20 C 0.014 3.986 21 N -0.467 5.467 22 C 0.013 3.987 23 C -0.136 4.136 24 C 0.039 3.961 25 C 0.112 3.888 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -21.272 -5.753 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.124 4.124 12 H 0.103 0.897 13 C -0.160 4.160 14 C -0.026 4.026 15 N -0.343 5.343 16 C 0.351 3.649 17 O -0.416 6.416 18 C -0.130 4.130 19 C -0.175 4.175 20 C -0.115 4.115 21 N -0.186 5.186 22 C -0.116 4.116 23 C -0.174 4.174 24 C -0.091 4.091 25 C -0.010 4.010 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.074 -22.248 -5.340 23.240 hybrid contribution 0.295 2.061 -0.105 2.085 sum -3.779 -20.187 -5.445 21.247 Atomic orbital electron populations 1.69653 1.05111 1.25696 1.57782 1.24738 0.95538 0.97712 1.02960 0.86183 0.78683 0.83767 0.77519 1.21712 1.21755 1.20740 1.19227 0.91068 0.84101 1.42708 0.91152 1.42307 1.05835 0.99822 1.89558 1.20549 0.92743 0.84870 0.98194 1.22565 0.98620 0.93686 0.97533 0.89667 1.22675 1.02194 0.92944 0.98139 1.22290 0.94207 0.93601 0.92528 1.48468 1.36671 1.06502 1.42704 1.19058 0.83528 0.80584 0.81721 1.90712 1.41572 1.73990 1.35327 1.23709 0.95256 0.97329 0.96747 1.23299 1.02173 0.99321 0.92739 1.23643 0.99817 0.94656 0.93361 1.70449 1.04647 1.41309 1.02244 1.23919 0.95090 0.90945 1.01624 1.23219 0.92174 0.99080 1.02977 1.24336 0.96155 0.89878 0.98694 1.22287 0.92736 0.86952 0.99036 0.93501 0.78257 0.95990 0.95951 0.89444 0.90267 0.91515 0.91409 0.90211 0.90697 0.89595 0.90184 0.89467 0.90262 0.90580 0.90170 0.89069 0.88975 0.90356 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.83 5.55 -59.91 -0.33 -18.17 16 10 C 0.16 3.14 5.71 -4.04 -0.02 3.12 16 11 C -0.10 -1.59 3.05 -88.47 -0.27 -1.86 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 13 C -0.12 -1.61 6.37 -24.89 -0.16 -1.76 16 14 C 0.10 1.04 5.77 -3.06 -0.02 1.02 16 15 N -0.61 -7.82 3.33 -170.51 -0.57 -8.39 16 16 C 0.56 7.60 7.32 -10.99 -0.08 7.51 16 17 O -0.54 -9.16 16.82 5.56 0.09 -9.07 16 18 C -0.13 -1.26 0.93 -149.92 -0.14 -1.40 16 19 C -0.14 -1.11 5.31 -23.95 -0.13 -1.24 16 20 C 0.01 0.11 6.66 -1.32 -0.01 0.10 16 21 N -0.47 -4.17 6.98 -220.14 -1.54 -5.70 16 22 C 0.01 0.10 6.69 -0.40 0.00 0.09 16 23 C -0.14 -1.14 5.30 -24.12 -0.13 -1.27 16 24 C 0.04 0.39 6.03 0.44 0.00 0.39 16 25 C 0.11 1.57 6.37 -2.53 -0.02 1.56 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.38 9.76 7.67 -40.82 -0.31 9.45 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 32 H 0.07 0.62 6.45 -51.93 -0.34 0.28 16 33 H 0.07 0.66 6.28 -51.93 -0.33 0.33 16 34 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.60 6.38 -51.93 -0.33 0.27 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.96 8.13 -51.93 -0.42 0.53 16 44 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 45 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -31.61 347.77 -10.08 -41.69 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.46 Total: 5.19 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.22 Total: -0.94 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -1.71 Total: -59.21 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.61 -10.08 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690752036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.360 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds