Wall clock time and date at job start Tue Mar 31 2020 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47160 * 270.00028 * 3 2 1 5 5 H 1.48507 * 109.46919 * 29.99415 * 3 2 1 6 6 H 1.48496 * 109.47199 * 149.99811 * 3 2 1 7 7 C 1.38812 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00240 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00016 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46962 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.91754 * 308.90262 * 11 10 9 13 13 C 1.55156 * 111.00556 * 72.80873 * 11 10 9 14 14 C 1.54334 * 103.02232 * 153.37663 * 13 11 10 15 15 N 1.47024 * 107.26419 * 338.13993 * 14 13 11 16 16 C 1.34781 * 125.64583 * 178.84867 * 15 14 13 17 17 O 1.21280 * 119.99884 * 179.69318 * 16 15 14 18 18 C 1.50696 * 119.99697 * 359.69220 * 16 15 14 19 19 C 1.56245 * 116.69238 * 62.43095 * 18 16 15 20 20 C 1.54979 * 103.18216 * 158.94135 * 19 18 16 21 21 N 1.49516 * 105.24081 * 0.65214 * 20 19 18 22 22 C 1.51402 * 106.79381 * 70.59483 * 21 20 19 23 23 C 1.54660 * 105.15516 * 289.44190 * 22 21 20 24 24 C 1.50465 * 102.03833 * 324.87051 * 21 20 19 25 25 C 1.47428 * 108.70486 * 358.58735 * 15 14 13 26 26 H 0.96990 * 120.00024 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00066 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46772 * 59.99756 * 10 9 7 29 29 H 1.08994 * 109.47294 * 300.00572 * 10 9 7 30 30 H 1.09001 * 110.71866 * 271.94110 * 13 11 10 31 31 H 1.09002 * 110.71900 * 35.20669 * 13 11 10 32 32 H 1.09000 * 109.99057 * 218.66745 * 14 13 11 33 33 H 1.08994 * 109.77583 * 97.49437 * 14 13 11 34 34 H 1.08996 * 110.66678 * 277.38483 * 19 18 16 35 35 H 1.08997 * 110.66616 * 40.51599 * 19 18 16 36 36 H 1.09001 * 110.28195 * 241.72451 * 20 19 18 37 37 H 1.08993 * 110.39609 * 119.64366 * 20 19 18 38 38 H 1.09000 * 110.72553 * 170.33388 * 22 21 20 39 39 H 1.09005 * 110.04483 * 48.19304 * 22 21 20 40 40 H 1.08996 * 110.67187 * 240.45641 * 23 22 21 41 41 H 1.09001 * 110.67276 * 117.32060 * 23 22 21 42 42 H 1.09002 * 111.91048 * 297.80757 * 24 21 20 43 43 H 1.08995 * 111.91065 * 171.66711 * 24 21 20 44 44 H 1.08994 * 110.36782 * 143.19623 * 25 15 14 45 45 H 1.09001 * 110.36053 * 265.51865 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3253 -4.6998 0.7938 13 6 0.3765 -4.9645 -1.3823 14 6 0.0045 -6.4616 -1.4308 15 7 0.8817 -7.1602 -0.4799 16 6 0.8561 -8.4808 -0.2121 17 8 1.6338 -8.9520 0.5905 18 6 -0.1388 -9.3720 -0.9099 19 6 -0.0180 -9.4766 -2.4642 20 6 -0.7478 -10.8052 -2.7868 21 7 -1.2207 -11.3244 -1.4668 22 6 -2.3403 -10.4116 -1.0133 23 6 -1.6505 -9.0766 -0.6476 24 6 -0.1086 -10.9005 -0.5462 25 6 1.7981 -6.1779 0.1274 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6848 -3.7145 0.8906 29 1 2.6848 -3.7146 -0.8893 30 1 -0.5159 -4.3410 -1.4366 31 1 1.0705 -4.7171 -2.1855 32 1 0.1619 -6.8522 -2.4361 33 1 -1.0374 -6.5923 -1.1388 34 1 -0.5171 -8.6360 -2.9463 35 1 1.0280 -9.5289 -2.7661 36 1 -0.0581 -11.5132 -3.2462 37 1 -1.5958 -10.6222 -3.4466 38 1 -2.8470 -10.8262 -0.1419 39 1 -3.0507 -10.2595 -1.8260 40 1 -1.8182 -8.8314 0.4011 41 1 -2.0028 -8.2719 -1.2929 42 1 0.8408 -11.3639 -0.8149 43 1 -0.3583 -11.0745 0.5004 44 1 1.9722 -6.4191 1.1759 45 1 2.7414 -6.1513 -0.4183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690752036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:10 Heat of formation + Delta-G solvation = -19.222891 kcal Electronic energy + Delta-G solvation = -24128.793260 eV Core-core repulsion = 20759.785005 eV Total energy + Delta-G solvation = -3369.008255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.20147 -40.45093 -38.72967 -36.46890 -34.02948 -32.30219 -31.69625 -31.29023 -30.18758 -29.06654 -27.18746 -25.02970 -23.98397 -23.50588 -22.51491 -21.43721 -21.40820 -19.87769 -19.12226 -17.81405 -17.46303 -17.11183 -16.82089 -16.46072 -16.25365 -15.66932 -15.33057 -14.95477 -14.81282 -14.59433 -14.25499 -13.99172 -13.90207 -13.82748 -13.48680 -13.24315 -13.01681 -12.90862 -12.73852 -12.70920 -12.40471 -12.29228 -12.23462 -12.12476 -11.83854 -11.69956 -11.64560 -11.57156 -11.28417 -10.95178 -10.92673 -10.06108 -9.74385 -8.99516 -7.95218 -5.23556 1.41351 1.48611 1.49484 1.57988 1.82547 2.56257 2.76015 3.25105 3.38807 3.44039 3.49940 3.60780 3.70459 3.84623 3.88769 4.04885 4.13028 4.20618 4.26726 4.31289 4.37179 4.46332 4.50386 4.52570 4.59162 4.63245 4.72511 4.74041 4.80897 4.84298 4.92791 4.93857 4.98899 5.03071 5.04831 5.12406 5.21603 5.23022 5.38055 5.45297 5.50609 5.64785 6.27295 6.42211 7.00116 7.34509 8.08895 8.33331 9.28110 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.002878 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.045871 B = 9725.399559 C =10025.029351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.165 3.835 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.117 4.117 14 C 0.103 3.897 15 N -0.610 5.610 16 C 0.560 3.440 17 O -0.583 6.583 18 C -0.128 4.128 19 C -0.130 4.130 20 C 0.017 3.983 21 N -0.476 5.476 22 C 0.016 3.984 23 C -0.130 4.130 24 C 0.038 3.962 25 C 0.118 3.882 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.017 0.983 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -21.854 -7.328 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.155 4.155 14 C -0.019 4.019 15 N -0.342 5.342 16 C 0.349 3.651 17 O -0.463 6.463 18 C -0.133 4.133 19 C -0.169 4.169 20 C -0.112 4.112 21 N -0.196 5.196 22 C -0.113 4.113 23 C -0.169 4.169 24 C -0.092 4.092 25 C -0.005 4.005 26 H 0.060 0.940 27 H 0.208 0.792 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.662 -22.853 -6.935 24.333 hybrid contribution 0.530 2.187 0.414 2.288 sum -4.132 -20.667 -6.521 22.062 Atomic orbital electron populations 1.69795 1.06457 1.26088 1.59397 1.25518 0.96402 1.00924 1.03648 0.85176 0.77673 0.79646 0.77476 1.21264 1.22223 1.19712 1.19608 0.91485 0.85368 1.41324 0.90821 1.42469 1.05680 1.00847 1.89422 1.20648 0.93353 0.84283 0.97933 1.22334 0.97689 0.92701 0.98784 0.90622 1.22616 1.01672 0.94753 0.96464 1.22369 0.94612 0.91520 0.93361 1.48513 1.36573 1.06352 1.42735 1.19650 0.83491 0.80748 0.81174 1.90687 1.43500 1.74742 1.37350 1.23638 0.95352 0.96380 0.97958 1.23302 1.02250 1.00435 0.90866 1.23704 1.00533 0.94153 0.92826 1.70434 1.04483 1.41996 1.02670 1.23967 0.94833 0.90013 1.02456 1.23222 0.90753 1.00144 1.02780 1.24266 0.96334 0.90095 0.98499 1.22110 0.93112 0.86620 0.98697 0.93961 0.79151 0.96476 0.95379 0.89916 0.90436 0.88981 0.89623 0.88513 0.91302 0.89337 0.88244 0.89358 0.88298 0.91623 0.88563 0.89970 0.90073 0.91517 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.25 -13.48 9.99 84.03 0.84 -12.64 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.27 5.55 -343.46 -1.91 -38.17 16 10 C 0.16 6.26 5.71 86.38 0.49 6.76 16 11 C -0.10 -2.85 3.05 -9.40 -0.03 -2.88 16 12 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 13 C -0.12 -2.91 6.37 31.79 0.20 -2.71 16 14 C 0.10 1.95 5.77 86.73 0.50 2.45 16 15 N -0.61 -14.82 3.33 -811.77 -2.70 -17.52 16 16 C 0.56 14.70 7.32 87.66 0.64 15.34 16 17 O -0.58 -20.12 16.82 -3.03 -0.05 -20.17 16 18 C -0.13 -2.37 0.93 -49.21 -0.05 -2.42 16 19 C -0.13 -1.75 5.31 32.40 0.17 -1.57 16 20 C 0.02 0.20 6.66 86.47 0.58 0.77 16 21 N -0.48 -7.53 6.98 -850.40 -5.94 -13.47 16 22 C 0.02 0.19 6.69 85.98 0.57 0.77 16 23 C -0.13 -1.87 5.30 32.29 0.17 -1.70 16 24 C 0.04 0.73 6.03 87.06 0.52 1.25 16 25 C 0.12 3.24 6.37 86.86 0.55 3.80 16 26 H 0.25 14.57 8.31 -92.72 -0.77 13.80 16 27 H 0.38 19.33 7.67 -92.71 -0.71 18.62 16 28 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.03 1.06 7.97 -2.39 -0.02 1.04 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 1.97 7.92 -2.39 -0.02 1.95 16 32 H 0.09 1.35 6.45 -2.39 -0.02 1.33 16 33 H 0.09 1.37 6.28 -2.39 -0.02 1.36 16 34 H 0.10 0.98 6.44 -2.39 -0.02 0.97 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 0.84 7.79 -2.39 -0.02 0.82 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 0.88 7.79 -2.38 -0.02 0.87 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.07 6.38 -2.39 -0.02 1.06 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 44 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 45 H 0.07 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -67.96 347.77 -2.38 -70.33 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.27 Total: 25.38 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.64 Total: 3.61 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -10.26 Total: -126.57 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.96 -2.38 -70.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690752036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.111 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds